Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Reverse (-)

12439780 .. 12443205

Gene Structure 3426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0156400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCCGCACCAGAAGCCCCTGTCAACTATGTCGGTGTGGCCAAAAAGTCCGCCGCTTTCCGCCTCATGAAACAAATGGGCTGGGAAGAAGGAGAAGGGCTTGGGAAAGACAAGCAGGGGATCAAAGGCTATGTTAGAGTCAAAAACAAGCAGGACACTGCTGGTGTTGGTGTAGAGAAGCCTAACCAGTGGGCATTTGATACAACCCAATTCGATAGCATCCTCAAAAGATTGAAAGTGCAAGCAGCTCAACCTATTATTGATGAAGCTGCTGACAAGAAGAAGAAGAGCACTGAAGTGGAAAGCGAGGATGAATTGCCTAGTGAGGTTAAGGAACCAGTTGTCAAGGCTACTCGACCACAGGGAAGATATAAGAGAAGAGAAAGAGGAAAGCTTGTCGATGCTTATTCTTCCAAGGATCTTGAAGGAATCCTTGTCAAAAGGGCGGCGTCTCCAGAGATAAATTATCTTGATGATGAGTCAGAGAAGGCAACCGAGATTCAAGTTATATGTCCTGAAGAAACCACATGTAAAGAGATTCCTCCAAATTGGTGGGGCCATAAATATGGGTTCGTCCCTGGGGGTTTGCTTGGTGCAGAATTGAAAAGAAGGAAGTTAGAAAAGTCCCAAGCGAATGAGAGAACTATGTTTTACGAGGATGATCAAGTAAATCTATACAATCTTGTTCAGGACAAATCCACAACTGGAAAGCAAGGACTAGGCATTAAGGACCGGAAAAAGAAAGTAGCCGGTTGCTACTTTGAGGGGAAAAAGACATCATTTAATGATAGCGATGATGAAGGTTCTGCTGATCTTGGCTCTCCCATGGAAGACAAACAAGATGAGTCGTTGGAAGTGGGAAGTGGCAATGAACCAAAACTAAAGCTGAAAAAGCTTTCTAAACAGATTCTTCGTCAGGCATCTGGAGAGTCAATGAAACTGAAAGCACTGAAAGCTTTGATCGATGAACATTCATCTTCTGTTTTCTCTGACTTTTCTTCAAAAAGAGATGCTGTTGCTTACTTGAGACAAAAGCTGGAAGGTAGCTCAAAGTTTATTGTGGAAGGGAAAAAAGTGAGTCTCAGATCGAAGACAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003678 GO:0003824 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

366

Amino Acids

40.78

Weight (kDa)

9.0

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch	PF01585	16 - 59	3.1e-15	G-patch domain
WHD_LYAR	PF25879	291 - 364	1.9e-22	LYAR family winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	6, 51, 54, 61, 446
AclWI	GGATC	2 cut(s)	128, 426
AcoI	YGGCCR	2 cut(s)	3, 39
AcuI	CTGAAG	2 cut(s)	315, 537
AcyI	GRCGYC	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	527
AgsI	TTSAA	5 cut(s)	235, 425, 503, 604, 1002
AjnI	CCWGG	1 cut(s)	577
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	8 cut(s)	248, 269, 394, 886, 895, 956, 1036, 1047
AluI	AGCT	8 cut(s)	248, 269, 394, 886, 895, 956, 1036, 1047
Alw21I	GWGCWC	1 cut(s)	293
Alw26I	GTCTC	3 cut(s)	456, 1021, 1085
AlwI	GGATC	2 cut(s)	128, 426
AoxI	GGCC	3 cut(s)	3, 39, 556
ApeKI	GCWGC	2 cut(s)	245, 269
AspS9I	GGNCC	2 cut(s)	556, 730
AvaII	GGWCC	1 cut(s)	730
BalI	TGGCCA	1 cut(s)	41
BbsI	GAAGAC	2 cut(s)	837, 1097
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	256, 257
BciT130I	CCWGG	1 cut(s)	579
BclI	TGATCA	1 cut(s)	661
BcoDI	GTCTC	3 cut(s)	456, 1021, 1085
BfaI	CTAG	2 cut(s)	321, 719
BisI	GCNGC	5 cut(s)	6, 54, 246, 270, 447
BlsI	GCNGC	5 cut(s)	7, 55, 247, 271, 448
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	556, 730
BmiI	GGNNCC	2 cut(s)	336, 557
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	4 cut(s)	228, 391, 929, 1000
BpiI	GAAGAC	2 cut(s)	837, 1097
BpmI	CTGGAG	2 cut(s)	438, 945
BpuEI	CTTGAG	1 cut(s)	1045
Bsa29I	ATCGAT	1 cut(s)	963
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	414, 577, 578, 825
BsaWI	WCCGGW	1 cut(s)	732
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	3 cut(s)	187, 338, 709
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	963
BseDI	CCNNGG	4 cut(s)	414, 577, 578, 825
BseGI	GGATG	3 cut(s)	219, 316, 664
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	1 cut(s)	1096
BseNI	ACTGG	3 cut(s)	187, 338, 709
BseXI	GCAGC	2 cut(s)	256, 257
BseYI	CCCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	615
BshFI	GGCC	3 cut(s)	5, 41, 558
BshVI	ATCGAT	1 cut(s)	963
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	2 cut(s)	733, 750
BslFI	GGGAC	2 cut(s)	560, 610
BsmAI	GTCTC	3 cut(s)	456, 1021, 1085
BsmBI	CGTCTC	1 cut(s)	456
BsmFI	GGGAC	2 cut(s)	560, 610
BsnI	GGCC	3 cut(s)	5, 41, 558
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	5 cut(s)	6, 51, 54, 61, 446
BspANI	GGCC	3 cut(s)	5, 41, 558
BspCNI	CTCAG	1 cut(s)	1095
BspDI	ATCGAT	1 cut(s)	963
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	336, 557
BspPI	GGATC	2 cut(s)	128, 426
BspQI	GCTCTTC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	874
BsrFI	RCCGGY	1 cut(s)	749
BsrI	ACTGG	3 cut(s)	187, 338, 709
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	4 cut(s)	414, 577, 578, 825
BssMI	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
BssNI	GRCGYC	1 cut(s)	449
BssT1I	CCWWGG	2 cut(s)	414, 825
Bst2UI	CCWGG	1 cut(s)	579
Bst6I	CTCTTC	2 cut(s)	281, 373
BstACI	GRCGYC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	1082
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	219, 316, 664
BstKTI	GATC	6 cut(s)	123, 421, 664, 814, 963, 1088
BstMAI	GTCTC	3 cut(s)	456, 1021, 1085
BstMBI	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 892, 953
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	577
BstV1I	GCAGC	2 cut(s)	256, 257
BstV2I	GAAGAC	2 cut(s)	837, 1097
BstX2I	RGATCY	1 cut(s)	418
BstXI	CCANNNNNNTGG	2 cut(s)	552, 566
BstYI	RGATCY	1 cut(s)	418
Bsu15I	ATCGAT	1 cut(s)	963
BsuRI	GGCC	3 cut(s)	5, 41, 558
BsuTUI	ATCGAT	1 cut(s)	963
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	807
BtsCI	GGATG	3 cut(s)	219, 316, 664
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	4 cut(s)	156, 194, 291, 947
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	2 cut(s)	556, 730
ClaI	ATCGAT	1 cut(s)	963
CseI	GACGC	1 cut(s)	438
CviAII	CATG	3 cut(s)	67, 528, 826
DdeI	CTNAG	1 cut(s)	1082
DpnI	GATC	6 cut(s)	122, 420, 663, 813, 962, 1087
DpnII	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
EaeI	YGGCCR	2 cut(s)	3, 39
Eam1104I	CTCTTC	2 cut(s)	281, 373
EarI	CTCTTC	2 cut(s)	281, 373
EciI	GGCGGA	2 cut(s)	40, 50
Eco130I	CCWWGG	2 cut(s)	414, 825
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	2 cut(s)	315, 537
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	414, 825
ErhI	CCWWGG	2 cut(s)	414, 825
Esp3I	CGTCTC	1 cut(s)	456
FaeI	CATG	3 cut(s)	70, 531, 829
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	2 cut(s)	560, 610
FatI	CATG	3 cut(s)	66, 527, 825
FbaI	TGATCA	1 cut(s)	661
Fnu4HI	GCNGC	5 cut(s)	6, 54, 246, 270, 447
FokI	GGATG	3 cut(s)	206, 323, 671
Fsp4HI	GCNGC	5 cut(s)	6, 54, 246, 270, 447
FspBI	CTAG	2 cut(s)	321, 719
GluI	GCNGC	5 cut(s)	6, 54, 246, 270, 447
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	2 cut(s)	438, 945
HaeIII	GGCC	3 cut(s)	5, 41, 558
HapII	CCGG	2 cut(s)	733, 750
HgaI	GACGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	70, 531, 829
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	3 cut(s)	392, 893, 954
HinfI	GANTC	9 cut(s)	138, 429, 479, 499, 538, 845, 907, 929, 1078
HpaII	CCGG	2 cut(s)	733, 750
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	484, 991, 1085
Hpy188III	TCNNGA	7 cut(s)	67, 422, 455, 470, 515, 689, 924
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	8 cut(s)	83, 89, 419, 481, 603, 794, 1034, 1058
HpyCH4V	TGCA	2 cut(s)	241, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 892, 953
HpyF3I	CTNAG	1 cut(s)	1082
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	70, 531, 829
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
LguI	GCTCTTC	1 cut(s)	281
Lsp1109I	GCAGC	2 cut(s)	256, 257
LweI	GCATC	4 cut(s)	228, 391, 929, 1000
MaeI	CTAG	2 cut(s)	321, 719
MalI	GATC	6 cut(s)	122, 420, 663, 813, 962, 1087
MboI	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	5 cut(s)	209, 314, 463, 547, 599
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	5 cut(s)	147, 488, 854, 938, 1087
MmeI	TCCRAC	1 cut(s)	831
MnlI	CCTC	8 cut(s)	74, 233, 301, 319, 380, 552, 649, 757
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	3 cut(s)	330, 726, 783
MslI	CAYNNNNRTG	2 cut(s)	296, 564
Msp20I	TGGCCA	1 cut(s)	41
MspI	CCGG	2 cut(s)	733, 750
MspR9I	CCNGG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	3 cut(s)	14, 892, 953
NcoI	CCATGG	1 cut(s)	825
NdeII	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
NlaIII	CATG	3 cut(s)	70, 531, 829
NlaIV	GGNNCC	2 cut(s)	336, 557
NspI	RCATGY	1 cut(s)	531
OliI	CACNNNNGTG	1 cut(s)	296
PagI	TCATGA	1 cut(s)	66
PasI	CCCWGGG	1 cut(s)	578
PciI	ACATGT	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	429, 499, 538, 907
PkrI	GCNGC	5 cut(s)	7, 55, 247, 271, 448
PleI	GAGTC	5 cut(s)	146, 487, 853, 937, 1086
PpsI	GAGTC	5 cut(s)	146, 487, 853, 937, 1086
PscI	ACATGT	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	336, 557
PspPI	GGNCC	2 cut(s)	556, 730
PsuI	RGATCY	1 cut(s)	418
RseI	CAYNNNNRTG	2 cut(s)	296, 564
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	330, 726, 783
SatI	GCNGC	5 cut(s)	6, 54, 246, 270, 447
Sau3AI	GATC	6 cut(s)	120, 418, 661, 811, 960, 1085
Sau96I	GGNCC	2 cut(s)	556, 730
SchI	GAGTC	5 cut(s)	147, 488, 854, 938, 1087
ScrFI	CCNGG	1 cut(s)	579
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	4 cut(s)	228, 391, 929, 1000
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	296, 564
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
Sse9I	AATT	5 cut(s)	209, 314, 463, 547, 599
SsiI	CCGC	5 cut(s)	6, 51, 54, 61, 446
SspMI	CTAG	2 cut(s)	321, 719
StyD4I	CCNGG	1 cut(s)	577
StyI	CCWWGG	2 cut(s)	414, 825
TaqI	TCGA	5 cut(s)	213, 355, 399, 963, 1088
TasI	AATT	5 cut(s)	209, 314, 463, 547, 599
TauI	GCSGC	3 cut(s)	8, 56, 449
TfiI	GAWTC	4 cut(s)	429, 499, 538, 907
Tru1I	TTAA	3 cut(s)	330, 726, 783
Tru9I	TTAA	3 cut(s)	330, 726, 783
TscAI	CASTG	4 cut(s)	163, 194, 298, 954
TseI	GCWGC	2 cut(s)	245, 269
TspDTI	ATGAA	8 cut(s)	83, 279, 327, 813, 885, 950, 963, 981
TspRI	CASTG	4 cut(s)	163, 194, 298, 954
VpaK11BI	GGWCC	1 cut(s)	730
XceI	RCATGY	1 cut(s)	531
XspI	CTAG	2 cut(s)	321, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.