Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383945.1

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Reverse (-)

716 .. 1182

Gene Structure 467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383945.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

gtgtcaacccagtaagaactggatcccccaatgcagataccgcctttcagaagaagagcattttctttgaagactctgttcctagcacaccagtctcgaggtttgccaactcgccaagatatagtgaggctggggatcactactttgacaatttctcaaggtttgattcattcagcagcaggcaagacagtggtttttcttctcaacctgagaggttcacaaggtttgattccatgaatagcactagagatttcagccactcaaggtttgattccataagcagcagcaaagactttggccaaagtcatggccacacaaggttcgattccataagcagcacaaaagattttggccagagtacatactctttcgatgagacagatccatttggctcttctggcccctttaaggtcacatcagagagtcaaaatccaaagaagggatctgataattggaatgctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

5.76

Isoelectric Point (pI)

59.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	5 cut(s)	17, 30, 143, 376, 450
AcoI	YGGCCR	3 cut(s)	297, 309, 351
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	408, 439
AgsI	TTSAA	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	99, 370
AlwI	GGATC	5 cut(s)	17, 30, 143, 376, 450
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	4 cut(s)	297, 309, 351, 399
ApeKI	GCWGC	4 cut(s)	176, 281, 284, 335
AspS9I	GGNCC	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	96
BalI	TGGCCA	3 cut(s)	299, 311, 353
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	188, 293, 296, 347
BcoDI	GTCTC	2 cut(s)	99, 370
BfaI	CTAG	2 cut(s)	83, 245
BisI	GCNGC	4 cut(s)	177, 282, 285, 336
BlsI	GCNGC	4 cut(s)	178, 283, 286, 337
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	400
BmiI	GGNNCC	2 cut(s)	24, 402
BmrI	ACTGGG	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	141, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 439
Bse1I	ACTGG	3 cut(s)	10, 24, 91
BseLI	CCNNNNNNNGG	2 cut(s)	408, 439
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	3 cut(s)	10, 24, 91
BseXI	GCAGC	4 cut(s)	188, 293, 296, 347
BseYI	CCCAGC	1 cut(s)	130
BshFI	GGCC	4 cut(s)	299, 311, 353, 401
BsiHKCI	CYCGRG	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	408, 439
BsmAI	GTCTC	2 cut(s)	99, 370
BsmI	GAATGC	1 cut(s)	462
BsnI	GGCC	4 cut(s)	299, 311, 353, 401
BsoBI	CYCGRG	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	22, 135, 381, 442
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	4 cut(s)	299, 311, 353, 401
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	24, 402
BspPI	GGATC	5 cut(s)	17, 30, 143, 376, 450
BspQI	GCTCTTC	2 cut(s)	49, 399
BsrI	ACTGG	3 cut(s)	10, 24, 91
BssMI	GATC	4 cut(s)	22, 135, 381, 442
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	49, 399
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	209
BstKTI	GATC	4 cut(s)	25, 138, 384, 445
BstMAI	GTCTC	2 cut(s)	99, 370
BstMBI	GATC	4 cut(s)	22, 135, 381, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 398
BstV1I	GCAGC	4 cut(s)	188, 293, 296, 347
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	3 cut(s)	22, 381, 442
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	3 cut(s)	22, 381, 442
BsuRI	GGCC	4 cut(s)	299, 311, 353, 401
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	234, 307
CviJI	RGCY	7 cut(s)	130, 257, 299, 311, 353, 392, 401
CviKI_1	RGCY	7 cut(s)	130, 257, 299, 311, 353, 392, 401
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	4 cut(s)	24, 137, 383, 444
DpnII	GATC	4 cut(s)	22, 135, 381, 442
EaeI	YGGCCR	3 cut(s)	297, 309, 351
Eam1104I	CTCTTC	2 cut(s)	49, 399
EarI	CTCTTC	2 cut(s)	49, 399
Eco88I	CYCGRG	1 cut(s)	96
FaeI	CATG	2 cut(s)	237, 310
FaiI	YATR	6 cut(s)	122, 235, 277, 308, 331, 363
FatI	CATG	2 cut(s)	233, 306
Fnu4HI	GCNGC	4 cut(s)	177, 282, 285, 336
Fsp4HI	GCNGC	4 cut(s)	177, 282, 285, 336
FspBI	CTAG	2 cut(s)	83, 245
GluI	GCNGC	4 cut(s)	177, 282, 285, 336
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	4 cut(s)	299, 311, 353, 401
Hin1II	CATG	2 cut(s)	237, 310
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	6 cut(s)	73, 166, 229, 271, 325, 423
Hpy166II	GTNNAC	2 cut(s)	6, 218
Hpy188I	TCNGA	3 cut(s)	50, 420, 447
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	2 cut(s)	6, 218
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 398
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	237, 310
Kzo9I	GATC	4 cut(s)	22, 135, 381, 442
LguI	GCTCTTC	2 cut(s)	49, 399
LpnPI	CCDG	8 cut(s)	5, 23, 104, 116, 165, 221, 367, 383
Lsp1109I	GCAGC	4 cut(s)	188, 293, 296, 347
MaeI	CTAG	2 cut(s)	83, 245
MaeIII	GTNAC	1 cut(s)	411
MalI	GATC	4 cut(s)	24, 137, 383, 444
MboI	GATC	4 cut(s)	22, 135, 381, 442
MboII	GAAGA	5 cut(s)	63, 66, 82, 191, 386
MflI	RGATCY	3 cut(s)	22, 381, 442
MlsI	TGGCCA	3 cut(s)	299, 311, 353
MluCI	AATT	2 cut(s)	150, 450
MluNI	TGGCCA	3 cut(s)	299, 311, 353
MlyI	GAGTC	2 cut(s)	67, 432
MnlI	CCTC	3 cut(s)	92, 120, 206
Mox20I	TGGCCA	3 cut(s)	299, 311, 353
MscI	TGGCCA	3 cut(s)	299, 311, 353
MseI	TTAA	2 cut(s)	407, 465
Msp20I	TGGCCA	3 cut(s)	299, 311, 353
Mva1269I	GAATGC	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	40, 398
NdeII	GATC	4 cut(s)	22, 135, 381, 442
NlaIII	CATG	2 cut(s)	237, 310
NlaIV	GGNNCC	2 cut(s)	24, 402
NmuCI	GTSAC	1 cut(s)	411
PaeR7I	CTCGAG	1 cut(s)	96
PciSI	GCTCTTC	2 cut(s)	49, 399
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	166, 229, 271, 325
PkrI	GCNGC	4 cut(s)	178, 283, 286, 337
PleI	GAGTC	2 cut(s)	67, 431
PpsI	GAGTC	2 cut(s)	67, 431
PspFI	CCCAGC	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	24, 402
PspPI	GGNCC	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	22, 381, 442
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SapI	GCTCTTC	2 cut(s)	49, 399
SaqAI	TTAA	2 cut(s)	407, 465
SatI	GCNGC	4 cut(s)	177, 282, 285, 336
Sau3AI	GATC	4 cut(s)	22, 135, 381, 442
Sau96I	GGNCC	1 cut(s)	400
SchI	GAGTC	2 cut(s)	67, 432
SetI	ASST	8 cut(s)	103, 163, 210, 217, 226, 268, 322, 413
Sfr274I	CTCGAG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	3 cut(s)	96, 156, 261
SmoI	CTYRAG	3 cut(s)	96, 156, 261
Sse9I	AATT	2 cut(s)	150, 450
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	83, 245
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	97, 323, 371
TasI	AATT	2 cut(s)	150, 450
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	4 cut(s)	166, 229, 271, 325
Tru1I	TTAA	2 cut(s)	407, 465
Tru9I	TTAA	2 cut(s)	407, 465
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	4 cut(s)	176, 281, 284, 335
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	2 cut(s)	158, 250
TspRI	CASTG	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	96
XspI	CTAG	2 cut(s)	83, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.