Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007032

Physical Location & Seq

Genomic Coordinates Forward (+)

38679134 .. 38682219

Gene Structure 3086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGCCGGTGCGAATACGGATCAGCTCGAAGCTTACTTTCGGAGAGCGGATTTGGACGGAGACGGCAGGATCAGCGGAGCGGAGGCCGTCGCTTTCTTTCAGGGCGCCAATTTGCCCAAACCAGTTCTCGCTCAGATATGGATGCATGTGGATCAGAACAAAACTGGTTTCCTTGGTCGGCCAGAATTTTATAATGCTCTTAGACTTGTGACTGTGGCTCAAAGCAAGAGAGATTTAACGCCTGATATAGTCAAGGCTGCATTATATGGGCCAGCTGCTGCAAAAATTCCTGCTCCACAAATCAATCTTTCAGCCATATCTGCACCACAAGCAAATCCTATGGCTGGTGCACCTGCTCCACAGATGGGTATGGGGACACCACCAACATCTCAAAGTTTTGGGTTTAGAGGACCAGGGGCTCCTAATGCAGGCATGAACCAGAATTATTTTCAGCCACAGCAAAACCAGTCCATGAGACCTCCTCAAGGCATGACCCCTGGGATGCCTACTAGTGGATATTCCCATCCACAACAGGGTGTGGGAGGTGTAATGAACTCAAATAATTGGCTTAGTGGAAGCACTGGTGCACCTCCTTCTGGTCCCAGAGGGATTAGTCCTTCCATGCCCTCATCTACAACACAACCACAACCTTCAGTGTCAACATCTTCCCTGCCAACAGTTAATGACTCTAAATCATTAGTTCCTTCTGGAAATGGGTTTGCATCCAATTCGGGTTTCTCAGGTGATTTATTTTCTGCAACCCCTGCTCAATCAAAGCCAGGAGCTCCTGGGTCAACATATTCTGCTAGTAGTGCACCTCCGCCATCAGCCATTGTTCCAGTTTCAAGTGGGTCACAATCTTCTAGTAAGCTCAATGCACTTGATTCACTGAGTGCATTCACAATGCAGCCTTCTGGTGTAATGAGACTGAATGAAAACACTACTACTTCCTTCCTACTATTCTCTCTTCATCTTTTTCCTACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000147 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007010 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015629 GO:0015833 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0033036 GO:0034613 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044396 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061645 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098657 GO:0099568

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

330

Amino Acids

34.0

Weight (kDa)

9.43

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	8 - 68	5.6e-06	EF-hand domain pair
EH	PF12763	21 - 76	9.3e-08	EH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20760
fragaria_vesca	FvH4_5g25580 FvH4_5g25580
malus_domestica	MD06G1007400.v1.1
prunus_persica	Prupe.5G009300_v2.0.a1 Prupe.5G009300_v2.0.a1
pyrus_communis	pycom06g00650 pycom06g00660
rosa_chinensis	RchiOBHm_Chr7g0215891 RchiOBHm_Chr7g0219801 RchiOBHm_Chr7g0219941
rosa_laevigata	RLG00000002612
rosa_multiflora	Rmu_co8383945.1_g000001 Rmu_sc0006240.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243830
rosa_rugosa	Rorug07G0156400 Rorug07G0156500
rosa_samantha	Rh7AG294500 Rh7AG298200 Rh7BG286300 Rh7CG314500 Rh7CG318200 Rh7CG318300 Rh7DG297400
rosa_wichuraiana	Rw7G025020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	195, 991
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	364
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	2 cut(s)	50, 83
AciI	CCGC	5 cut(s)	5, 50, 78, 83, 824
AclWI	GGATC	3 cut(s)	30, 80, 162
AcoI	YGGCCR	2 cut(s)	6, 182
AcsI	RAATTY	2 cut(s)	188, 288
AcuI	CTGAAG	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	896
AfiI	CCNNNNNNNGG	7 cut(s)	347, 368, 431, 488, 515, 536, 599
AgsI	TTSAA	1 cut(s)	849
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	4 cut(s)	415, 499, 781, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	722, 754
AluBI	AGCT	5 cut(s)	28, 35, 278, 788, 874
AluI	AGCT	5 cut(s)	28, 35, 278, 788, 874
Alw21I	GWGCWC	4 cut(s)	355, 592, 790, 820
Alw26I	GTCTC	3 cut(s)	57, 472, 922
Alw44I	GTGCAC	3 cut(s)	351, 588, 816
AlwI	GGATC	3 cut(s)	30, 80, 162
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	4 cut(s)	6, 87, 182, 272
ApaLI	GTGCAC	3 cut(s)	351, 588, 816
ApeKI	GCWGC	4 cut(s)	260, 278, 281, 910
ApoI	RAATTY	2 cut(s)	188, 288
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	272, 413, 602
AsuHPI	GGTGA	1 cut(s)	758
AvaII	GGWCC	2 cut(s)	413, 602
BaeGI	GKGCMC	3 cut(s)	355, 592, 820
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	424, 790
Bbv12I	GWGCWC	4 cut(s)	355, 592, 790, 820
BbvI	GCAGC	4 cut(s)	247, 265, 268, 922
BccI	CCATC	3 cut(s)	361, 534, 835
BceAI	ACGGC	2 cut(s)	74, 82
BcgI	CGANNNNNNTGC	2 cut(s)	714, 748
BciT130I	CCWGG	4 cut(s)	417, 501, 783, 792
BcoDI	GTCTC	3 cut(s)	57, 472, 922
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	3 cut(s)	513, 810, 867
BfoI	RGCGCY	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	5 cut(s)	6, 261, 279, 282, 911
BlsI	GCNGC	5 cut(s)	7, 262, 280, 283, 912
Bme1390I	CCNGG	4 cut(s)	417, 501, 783, 792
Bme18I	GGWCC	2 cut(s)	413, 602
BmgT120I	GGNCC	3 cut(s)	272, 413, 602
BmiI	GGNNCC	3 cut(s)	109, 423, 604
BmrFI	CCNGG	4 cut(s)	417, 501, 783, 792
BmsI	GCATC	3 cut(s)	135, 495, 734
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpuEI	CTTGAG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	5 cut(s)	175, 416, 499, 500, 791
Bsc4I	CCNNNNNNNGG	7 cut(s)	347, 368, 431, 488, 515, 536, 599
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	5 cut(s)	125, 172, 469, 589, 842
BseBI	CCWGG	4 cut(s)	417, 501, 783, 792
BseDI	CCNNGG	5 cut(s)	175, 416, 499, 500, 791
BseGI	GGATG	4 cut(s)	150, 510, 526, 725
BseLI	CCNNNNNNNGG	7 cut(s)	347, 368, 431, 488, 515, 536, 599
BseMII	CTCAG	3 cut(s)	149, 756, 884
BseNI	ACTGG	5 cut(s)	125, 172, 469, 589, 842
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	3 cut(s)	355, 592, 820
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	4 cut(s)	247, 265, 268, 922
BsgI	GTGCAG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	8, 89, 184, 274
BshNI	GGYRCC	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	4 cut(s)	355, 592, 790, 820
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	391, 588
BslI	CCNNNNNNNGG	7 cut(s)	347, 368, 431, 488, 515, 536, 599
BsmAI	GTCTC	3 cut(s)	57, 472, 922
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	391, 588
BsmI	GAATGC	1 cut(s)	899
BsnI	GGCC	4 cut(s)	8, 89, 184, 274
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	5 cut(s)	355, 424, 592, 790, 820
Bsp143I	GATC	3 cut(s)	22, 72, 154
BspACI	CCGC	5 cut(s)	5, 50, 78, 83, 824
BspANI	GGCC	4 cut(s)	8, 89, 184, 274
BspCNI	CTCAG	3 cut(s)	148, 755, 885
BspLI	GGNNCC	3 cut(s)	109, 423, 604
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	3 cut(s)	30, 80, 162
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	472
BsrBI	CCGCTC	2 cut(s)	50, 83
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	5 cut(s)	125, 172, 469, 589, 842
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	5 cut(s)	175, 416, 499, 500, 791
BssMI	GATC	3 cut(s)	22, 72, 154
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	175
Bst2UI	CCWGG	4 cut(s)	417, 501, 783, 792
Bst4CI	ACNGT	2 cut(s)	217, 682
Bst6I	CTCTTC	1 cut(s)	975
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstC8I	GCNNGC	2 cut(s)	276, 433
BstDEI	CTNAG	5 cut(s)	135, 203, 572, 742, 893
BstENI	CCTNNNNNAGG	2 cut(s)	429, 486
BstF5I	GGATG	4 cut(s)	150, 510, 526, 725
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	25, 75, 157
BstMAI	GTCTC	3 cut(s)	57, 472, 922
BstMBI	GATC	3 cut(s)	22, 72, 154
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 767, 815
BstNI	CCWGG	4 cut(s)	417, 501, 783, 792
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	4 cut(s)	415, 499, 781, 790
BstSLI	GKGCMC	3 cut(s)	355, 592, 820
BstV1I	GCAGC	4 cut(s)	247, 265, 268, 922
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	8, 89, 184, 274
BtsCI	GGATG	4 cut(s)	150, 510, 526, 725
BtsIMutI	CAGTG	3 cut(s)	582, 663, 890
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	276, 433
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	3 cut(s)	272, 413, 602
CviAII	CATG	5 cut(s)	149, 436, 475, 493, 625
DdeI	CTNAG	5 cut(s)	135, 203, 572, 742, 893
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	3 cut(s)	24, 74, 156
DpnII	GATC	3 cut(s)	22, 72, 154
DraIII	CACNNNGTG	1 cut(s)	896
EaeI	YGGCCR	2 cut(s)	6, 182
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
EciI	GGCGGA	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	788
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	424, 790
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	413, 602
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	788
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	788
EcoNI	CCTNNNNNAGG	2 cut(s)	429, 486
EcoRII	CCWGG	4 cut(s)	415, 499, 781, 790
EcoT14I	CCWWGG	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	150
EcoT38I	GRGCYC	2 cut(s)	424, 790
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	5 cut(s)	152, 439, 478, 496, 628
FaqI	GGGAC	2 cut(s)	391, 588
FatI	CATG	5 cut(s)	148, 435, 474, 492, 624
Fnu4HI	GCNGC	5 cut(s)	6, 261, 279, 282, 911
FokI	GGATG	4 cut(s)	157, 513, 517, 712
FriOI	GRGCYC	2 cut(s)	424, 790
Fsp4HI	GCNGC	5 cut(s)	6, 261, 279, 282, 911
FspBI	CTAG	3 cut(s)	513, 810, 867
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	5 cut(s)	6, 261, 279, 282, 911
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	8, 89, 184, 274
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	152, 439, 478, 496, 628
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	663, 798
HindII	GTYRAC	2 cut(s)	663, 798
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	2 cut(s)	689, 887
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	758
Hpy166II	GTNNAC	5 cut(s)	353, 590, 663, 798, 818
Hpy188I	TCNGA	3 cut(s)	45, 138, 159
Hpy188III	TCNNGA	1 cut(s)	711
Hpy8I	GTNNAC	5 cut(s)	353, 590, 663, 798, 818
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	6 cut(s)	606, 630, 663, 717, 924, 964
HpyCH4III	ACNGT	2 cut(s)	217, 682
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 767, 815
HpyF3I	CTNAG	5 cut(s)	135, 203, 572, 742, 893
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	5 cut(s)	152, 439, 478, 496, 628
HspAI	GCGC	1 cut(s)	108
KasI	GGCGCC	1 cut(s)	107
Kzo9I	GATC	3 cut(s)	22, 72, 154
LmnI	GCTCC	6 cut(s)	80, 301, 364, 427, 785, 793
Lsp1109I	GCAGC	4 cut(s)	247, 265, 268, 922
LweI	GCATC	3 cut(s)	135, 495, 734
MaeI	CTAG	3 cut(s)	513, 810, 867
MaeIII	GTNAC	2 cut(s)	211, 855
MalI	GATC	3 cut(s)	24, 74, 156
MbiI	CCGCTC	2 cut(s)	50, 83
MboI	GATC	3 cut(s)	22, 72, 154
MboII	GAAGA	3 cut(s)	660, 855, 962
MhlI	GDGCHC	5 cut(s)	355, 424, 592, 790, 820
MluCI	AATT	6 cut(s)	112, 188, 288, 445, 565, 730
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	683
MnlI	CCTC	9 cut(s)	79, 404, 492, 495, 539, 602, 603, 640, 831
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	2 cut(s)	239, 684
MspA1I	CMGCKG	2 cut(s)	78, 278
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	4 cut(s)	417, 501, 783, 792
Mva1269I	GAATGC	1 cut(s)	899
MvaI	CCWGG	4 cut(s)	417, 501, 783, 792
MwoI	GCNNNNNNNGC	7 cut(s)	11, 75, 323, 332, 428, 767, 815
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	3 cut(s)	22, 72, 154
NlaIII	CATG	5 cut(s)	152, 439, 478, 496, 628
NlaIV	GGNNCC	3 cut(s)	109, 423, 604
NmuCI	GTSAC	2 cut(s)	211, 855
NsiI	ATGCAT	1 cut(s)	150
NspI	RCATGY	1 cut(s)	152
PaqCI	CACCTGC	1 cut(s)	364
PasI	CCCWGGG	1 cut(s)	500
PctI	GAATGC	1 cut(s)	899
PfeI	GAWTC	1 cut(s)	887
PkrI	GCNGC	5 cut(s)	7, 262, 280, 283, 912
PleI	GAGTC	1 cut(s)	683
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	683
PsiI	TTATAA	2 cut(s)	195, 991
Psp124BI	GAGCTC	1 cut(s)	790
Psp6I	CCWGG	4 cut(s)	415, 499, 781, 790
PspGI	CCWGG	4 cut(s)	415, 499, 781, 790
PspN4I	GGNNCC	3 cut(s)	109, 423, 604
PspPI	GGNCC	3 cut(s)	272, 413, 602
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	790
SaqAI	TTAA	2 cut(s)	239, 684
SatI	GCNGC	5 cut(s)	6, 261, 279, 282, 911
Sau3AI	GATC	3 cut(s)	22, 72, 154
Sau96I	GGNCC	3 cut(s)	272, 413, 602
SchI	GAGTC	1 cut(s)	683
ScrFI	CCNGG	4 cut(s)	417, 501, 783, 792
SduI	GDGCHC	5 cut(s)	355, 424, 592, 790, 820
SfaNI	GCATC	3 cut(s)	135, 495, 734
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	2 cut(s)	413, 602
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	6 cut(s)	112, 188, 288, 445, 565, 730
SsiI	CCGC	5 cut(s)	5, 50, 78, 83, 824
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	3 cut(s)	513, 810, 867
SstI	GAGCTC	1 cut(s)	790
StyD4I	CCNGG	4 cut(s)	415, 499, 781, 790
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	217, 682
TaqI	TCGA	1 cut(s)	30
TasI	AATT	6 cut(s)	112, 188, 288, 445, 565, 730
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	887
Tru1I	TTAA	2 cut(s)	239, 684
Tru9I	TTAA	2 cut(s)	239, 684
TscAI	CASTG	3 cut(s)	589, 663, 897
TseFI	GTSAC	2 cut(s)	211, 855
TseI	GCWGC	4 cut(s)	260, 278, 281, 910
Tsp45I	GTSAC	2 cut(s)	211, 855
TspDTI	ATGAA	4 cut(s)	452, 569, 951, 962
TspGWI	ACGGA	2 cut(s)	35, 75
TspRI	CASTG	3 cut(s)	589, 663, 897
VneI	GTGCAC	3 cut(s)	351, 588, 816
VpaK11BI	GGWCC	2 cut(s)	413, 602
XagI	CCTNNNNNAGG	2 cut(s)	429, 486
XapI	RAATTY	2 cut(s)	188, 288
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	3 cut(s)	513, 810, 867
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.