pycom06g08750

cellulase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0010905
Physical Location & Seq
Reverse (-)
13972690 .. 13973955
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 819 bp
ATGGATACGCCACGAACACTTTACAATATCACTTCTACTTCTCCAGGCTCCGAGCCAGCAGCTGAGGCTGCTGCTGCCCTTGCCGCTGCTTCACTTGTTTTTAAAGTGGTTGATTCCAACTACTCCACGTTGCTCCTAAGCCATTCACGATCACTGTTTGACTTGGCAGACCAGCATAGAGCGTCTTACCAAGGCTATTGCCCATTTTACTGCTCCTACTCTGGCTATCAGGATGAGCTGTTATGGGCTGCGGCTTGGCTATACAAGGCGAGTGCAGACACCAAGTATTTGAATTATGTCTCGAGCAACCAAGCATGGAGTCAGGCAGTGTCTGAGTTCAGTTGGGATAACAAATTAGTTGGAGCTCAGACATTACTAGCCAAGTTAATTCGTAAATTTTCACAGGAATTCTTCAGTGGAAATACGAATTTGGCTAAGTACAATAGCGATGTCCAGTCGTTCGTATGCGCACTGATGCCAGGGAGTAGTTCGGTACAGATCAGAAGAACCCCAGGTGGACTACTTTTTACAAGAGATAGTAGTAATTTGCAATATGTAACAAGCTCAACCATGGTGCTATTCATCTACTCCAAAACCCTAACTGCAGCACAAATTGGTGGAGTCCAATGCGGCTCGGTCTTTTTCTCTACCTCCGAAATCAGAACCTTTGCAAAATATCAGGTGATTAACAATCTCAAAATTTCTCATATTAAAAAAATGTCTTCAATAAATTGGAGATTGGGTGACGCCAGGGAAGGATCCTATGTGTGGGCAGCCTTTGGCTGTAGCCCACGTGGAATTTTAGGAAAAAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

273

Amino Acids

30.04

Weight (kDa)

9.29

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 228 1.9e-53 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09740 AT4G23560
fragaria_vesca FvH4_5g03220
malus_domestica MD06G1091600.v1.1
prunus_persica Prupe.5G106800_v2.0.a1 Prupe.5G106800_v2.0.a1
pyrus_communis pycom06g08750
rosa_chinensis RchiOBHm_Chr7g0196541
rosa_laevigata RLG00000004006
rosa_multiflora Rmu_sc0013350.1_g000007
rosa_roxburghii Rroxscaffold_3G00259210
rosa_rugosa Rorug07G0034400 Rorug07G0034500 Rorug07G0034600
rosa_samantha Rh1BG041400 Rh7AG158700 Rh7BG160700 Rh7CG167100 Rh7DG159900
rosa_wichuraiana Rw7G013870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 469
AciI CCGC 3 cut(s) 84, 251, 630
AclWI GGATC 2 cut(s) 753, 766
AcsI RAATTY 5 cut(s) 395, 407, 427, 699, 798
AcuI CTGAAG 1 cut(s) 397
AcvI CACGTG 1 cut(s) 794
AcyI GRCGYC 1 cut(s) 747
AfaI GTAC 2 cut(s) 440, 495
AfiI CCNNNNNNNGG 1 cut(s) 768
AgsI TTSAA 2 cut(s) 292, 726
AjnI CCWGG 4 cut(s) 43, 478, 511, 749
AluBI AGCT 4 cut(s) 62, 238, 365, 564
AluI AGCT 4 cut(s) 62, 238, 365, 564
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 753, 766
AlwNI CAGNNNCTG 2 cut(s) 62, 332
Ama87I CYCGRG 1 cut(s) 301
ApeKI GCWGC 8 cut(s) 59, 68, 71, 74, 86, 248, 605, 773
ApoI RAATTY 5 cut(s) 395, 407, 427, 699, 798
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 694, 755
AvaI CYCGRG 1 cut(s) 301
BamHI GGATCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 367
BbrPI CACGTG 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 8 cut(s) 55, 58, 61, 71, 73, 235, 617, 785
BciT130I CCWGG 4 cut(s) 45, 480, 513, 751
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 603, 784
Bme1390I CCNGG 4 cut(s) 45, 480, 513, 751
BmeT110I CYCGRG 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 49, 760
BmrFI CCNGG 4 cut(s) 45, 480, 513, 751
BmsI GCATC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 63, 137
BsaAI YACGTR 1 cut(s) 794
BsaHI GRCGYC 1 cut(s) 747
BsaJI CCNNGG 5 cut(s) 190, 479, 511, 570, 750
BsaXI ACNNNNNCTCC 2 cut(s) 727, 757
Bsc4I CCNNNNNNNGG 1 cut(s) 768
Bse1I ACTGG 1 cut(s) 454
BseBI CCWGG 4 cut(s) 45, 480, 513, 751
BseDI CCNNGG 5 cut(s) 190, 479, 511, 570, 750
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 768
BseMII CTCAG 3 cut(s) 54, 324, 380
BseNI ACTGG 1 cut(s) 454
BseXI GCAGC 8 cut(s) 55, 58, 61, 71, 73, 235, 617, 785
BsgI GTGCAG 1 cut(s) 294
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 768
BsmAI GTCTC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 149, 498, 758
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 3 cut(s) 84, 251, 630
BspCNI CTCAG 3 cut(s) 55, 325, 379
BspLI GGNNCC 2 cut(s) 49, 760
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 2 cut(s) 753, 766
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 5 cut(s) 190, 479, 511, 570, 750
BssMI GATC 3 cut(s) 149, 498, 758
BssNI GRCGYC 1 cut(s) 747
BssT1I CCWWGG 2 cut(s) 190, 570
Bst2UI CCWGG 4 cut(s) 45, 480, 513, 751
Bst4CI ACNGT 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 747
BstBAI YACGTR 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 5 cut(s) 63, 137, 333, 366, 435
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 3 cut(s) 152, 501, 761
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 3 cut(s) 149, 498, 758
BstMWI GCNNNNNNNGC 5 cut(s) 65, 68, 74, 80, 83
BstNI CCWGG 4 cut(s) 45, 480, 513, 751
BstSCI CCNGG 4 cut(s) 43, 478, 511, 749
BstSFI CTRYAG 2 cut(s) 603, 784
BstV1I GCAGC 8 cut(s) 55, 58, 61, 71, 73, 235, 617, 785
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 758
BstYI RGATCY 1 cut(s) 758
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 462
BtsCI GGATG 1 cut(s) 238
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 4 cut(s) 152, 333, 421, 470
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 2 cut(s) 62, 332
CfoI GCGC 1 cut(s) 470
CseI GACGC 2 cut(s) 171, 755
Csp6I GTAC 2 cut(s) 439, 494
CviAII CATG 2 cut(s) 315, 571
CviQI GTAC 2 cut(s) 439, 494
DdeI CTNAG 5 cut(s) 63, 137, 333, 366, 435
DpnI GATC 3 cut(s) 151, 500, 760
DpnII GATC 3 cut(s) 149, 498, 758
DraI TTTAAA 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 190, 570
Eco24I GRGCYC 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 365
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 4 cut(s) 43, 478, 511, 749
EcoT14I CCWWGG 2 cut(s) 190, 570
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 190, 570
FaeI CATG 2 cut(s) 318, 574
FatI CATG 2 cut(s) 314, 570
FokI GGATG 1 cut(s) 245
FriOI GRGCYC 1 cut(s) 367
FspAI RTGCGCAY 1 cut(s) 469
FspBI CTAG 1 cut(s) 377
FspI TGCGCA 1 cut(s) 469
GlaI GCGC 1 cut(s) 469
GsuI CTGGAG 1 cut(s) 27
HgaI GACGC 2 cut(s) 171, 755
HhaI GCGC 1 cut(s) 470
Hin1I GRCGYC 1 cut(s) 747
Hin1II CATG 2 cut(s) 318, 574
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HinfI GANTC 3 cut(s) 113, 319, 621
HphI GGTGA 2 cut(s) 694, 755
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 6 cut(s) 52, 334, 369, 503, 655, 662
Hpy188III TCNNGA 3 cut(s) 147, 230, 301
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 749
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4IV ACGT 2 cut(s) 128, 793
HpyCH4V TGCA 4 cut(s) 275, 550, 605, 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 68, 74, 80, 83
HpyF3I CTNAG 5 cut(s) 63, 137, 333, 366, 435
HpySE526I ACGT 2 cut(s) 128, 793
Hsp92I GRCGYC 1 cut(s) 747
Hsp92II CATG 2 cut(s) 318, 574
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 3 cut(s) 149, 498, 758
LmnI GCTCC 4 cut(s) 53, 138, 218, 362
Lsp1109I GCAGC 8 cut(s) 55, 58, 61, 71, 73, 235, 617, 785
LweI GCATC 1 cut(s) 465
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 128, 793
MaeIII GTNAC 2 cut(s) 556, 743
MalI GATC 3 cut(s) 151, 500, 760
MboI GATC 3 cut(s) 149, 498, 758
MboII GAAGA 3 cut(s) 403, 516, 714
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 1 cut(s) 367
MlyI GAGTC 2 cut(s) 328, 630
MmeI TCCRAC 2 cut(s) 141, 340
MnlI CCTC 2 cut(s) 58, 661
MseI TTAA 4 cut(s) 102, 386, 687, 711
MspA1I CMGCKG 2 cut(s) 62, 86
MspR9I CCNGG 4 cut(s) 45, 480, 513, 751
MvaI CCWGG 4 cut(s) 45, 480, 513, 751
MwoI GCNNNNNNNGC 5 cut(s) 65, 68, 74, 80, 83
NcoI CCATGG 1 cut(s) 570
NdeII GATC 3 cut(s) 149, 498, 758
NlaIII CATG 2 cut(s) 318, 574
NlaIV GGNNCC 2 cut(s) 49, 760
NmuCI GTSAC 1 cut(s) 743
NsbI TGCGCA 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 301
PfeI GAWTC 1 cut(s) 113
PleI GAGTC 2 cut(s) 327, 629
PmaCI CACGTG 1 cut(s) 794
PmlI CACGTG 1 cut(s) 794
PpsI GAGTC 2 cut(s) 327, 629
Ppu21I YACGTR 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 4 cut(s) 43, 478, 511, 749
PspCI CACGTG 1 cut(s) 794
PspGI CCWGG 4 cut(s) 43, 478, 511, 749
PspN4I GGNNCC 2 cut(s) 49, 760
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 2 cut(s) 62, 332
PsuI RGATCY 1 cut(s) 758
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 440, 495
RsaNI GTAC 2 cut(s) 439, 494
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 4 cut(s) 102, 386, 687, 711
Sau3AI GATC 3 cut(s) 149, 498, 758
SchI GAGTC 2 cut(s) 328, 630
ScrFI CCNGG 4 cut(s) 45, 480, 513, 751
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 465
SfcI CTRYAG 2 cut(s) 603, 784
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SsiI CCGC 3 cut(s) 84, 251, 630
SspMI CTAG 1 cut(s) 377
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 4 cut(s) 43, 478, 511, 749
StyI CCWWGG 2 cut(s) 190, 570
TaaI ACNGT 1 cut(s) 156
TaiI ACGT 2 cut(s) 131, 796
TaqI TCGA 1 cut(s) 302
TaqII GACCGA 1 cut(s) 625
TatI WGTACW 1 cut(s) 438
TauI GCSGC 3 cut(s) 86, 254, 633
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 4 cut(s) 102, 386, 687, 711
Tru9I TTAA 4 cut(s) 102, 386, 687, 711
TscAI CASTG 4 cut(s) 159, 333, 421, 477
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 8 cut(s) 59, 68, 71, 74, 86, 248, 605, 773
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 1 cut(s) 571
TspRI CASTG 4 cut(s) 159, 333, 421, 477
XapI RAATTY 5 cut(s) 395, 407, 427, 699, 798
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.