pycom06g09980

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0015077
Physical Location & Seq
Reverse (-)
15295226 .. 15296583
1358 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGGACACAATGCAAGAAAACAATCTTGCTTTTGGGTTCACAGACGCCATTGACATCGGATCTTCTCTCTCAAATATCATACTAACAAGCTCCACAAACACCCTGGACTCGATTTTTTCTCACTGCCCACAAACACTCACCACCGCCGTAACAACCACCAGCAGCGGCAGTTCTGTATCCGAGCCGCTGGGCTCATCAGTTTACCTCCGCCAAAGAGACCTTCTCCAGAAGTTCTGCGATGAAAGCCGAGCAAACGCAAACGCCACGGTTTCGCGCTCTTTTGAGACGAACCCATTGCAGAGCTCGGCTTGTTCTTCGACCACTTACATGGCTCCATACAAGAAGAAGCTCTATAGGGGAGTACGGCAGAGACATTGGGGCAAATGGGTAGCCGAGATCAGACTCCCTCAGAACAGAGTGAGGGTCTGGCTCGGCACCTACGACACTGCGGAAGCCGCCGCCTATGCGTACGACAGGGCGGCCTATAAGCTCCGCGGTGAGTACGCGAGGTTGAACTTCCCAAATCTTACGGACCCGAGCAAGTTGGGTTTCGGCGACGGTTCTAGACTGAACGCCGTGAAAAACTCCGTGGATGCGAAAATCCAAGCGATTATTCAGAAGGTGAAGAGGGACAGAGCCAAGAAGAATGTGAAGAAGAGCAGTTCTTCAGTTGGTGGCGGTGATAGGAGTTTCAGTGAGAATGGGAAGGTTGTGAAGGTGGAATCCTCTCCGTTGTCCTCGTCGTCGCCTTTGGTCTTTGGCGACGGTTTTGGCCACGAAACGGCGTCATTAACCCCGACGCCGACCGTGTCTGAGGACGGGGTTTGGAGGAGTGAGAAGAACTCACCGCCGTCTGTTTCAACAGAGTTTCAAATGGGGATGGCGGAGTTGGGAATGGGAGAAGAGTCGGAATTTGAAGGATGTTTTTCTTGTTTTAAACCCCGCGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAATATCGAAAATCCCGAATCGTACCCAAAAAATCTTGAAACCGAATAAAAAATATTTCAAACCGAAAATCCTGAAAATTTTGGTACCAATCCTAACCTTTTCGGTACAAGATTCAGACTCTCAATCTGATTTTTTTGGTAATCCCAAACCGAACCGAAGTTAA

Protein Analysis

379

Amino Acids

41.07

Weight (kDa)

9.44

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 117 - 166 9.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64380
fragaria_vesca FvH4_5g04470
malus_domestica MD06G1105500.v1.1 MD14G1127700.v1.1
prunus_persica Prupe.5G117800_v2.0.a1
pyrus_communis pycom06g09980
rosa_chinensis RchiOBHm_Chr7g0195031
rosa_laevigata RLG00000004151 RLG00000015304
rosa_multiflora Rmu_sc0002246.1_g000002
rosa_rugosa Rorug07G0020000
rosa_samantha Rh7AG147800 Rh7BG148400 Rh7CG151900 Rh7DG148800
rosa_wichuraiana Rw7G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1057
AccB1I GGYRCC 2 cut(s) 434, 1057
AccII CGCG 4 cut(s) 274, 495, 506, 945
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 2 cut(s) 911, 1050
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 3 cut(s) 45, 785, 800
AfaI GTAC 6 cut(s) 363, 470, 503, 997, 1059, 1080
AfiI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
AgsI TTSAA 6 cut(s) 514, 861, 872, 917, 1012, 1033
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 4 cut(s) 204, 236, 597, 629
AluBI AGCT 4 cut(s) 90, 303, 349, 490
AluI AGCT 4 cut(s) 90, 303, 349, 490
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 3 cut(s) 210, 278, 364
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 2 cut(s) 480, 772
ApeKI GCWGC 1 cut(s) 162
ApoI RAATTY 2 cut(s) 911, 1050
Asp718I GGTACC 1 cut(s) 1057
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 532
AsuHPI GGTGA 5 cut(s) 130, 509, 634, 692, 837
AvaI CYCGRG 1 cut(s) 535
AvaII GGWCC 1 cut(s) 532
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 2 cut(s) 434, 1057
BanII GRGCYC 2 cut(s) 194, 305
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 874
BceAI ACGGC 5 cut(s) 131, 380, 560, 798, 835
BcgI CGANNNNNNTGC 2 cut(s) 277, 311
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 210, 278, 364
BfaI CTAG 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 352
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
BlsI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 4 cut(s) 333, 436, 534, 1059
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 583
BplI GAGNNNNNCTC 4 cut(s) 207, 239, 827, 859
BpmI CTGGAG 1 cut(s) 209
BsaHI GRCGYC 3 cut(s) 45, 785, 800
BsaI GGTCTC 1 cut(s) 210
BsaJI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
Bse3DI GCAATG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BseGI GGATG 3 cut(s) 598, 885, 926
BseLI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
BseMI GCAATG 1 cut(s) 293
BseMII CTCAG 2 cut(s) 422, 804
BseRI GAGGAG 1 cut(s) 844
BseXI GCAGC 1 cut(s) 174
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 4 cut(s) 274, 495, 506, 945
Bsh1285I CGRYCG 1 cut(s) 807
BshFI GGCC 2 cut(s) 482, 774
BshNI GGYRCC 2 cut(s) 434, 1057
BsiEI CGRYCG 1 cut(s) 807
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 535
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 4 cut(s) 781, 947, 948, 949
BsmAI GTCTC 3 cut(s) 210, 278, 364
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 2 cut(s) 482, 774
Bso31I GGTCTC 1 cut(s) 210
BsoBI CYCGRG 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 194, 305
Bsp143I GATC 2 cut(s) 59, 396
BspANI GGCC 2 cut(s) 482, 774
BspCNI CTCAG 2 cut(s) 421, 805
BspFNI CGCG 4 cut(s) 274, 495, 506, 945
BspLI GGNNCC 4 cut(s) 333, 436, 534, 1059
BspPI GGATC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 2 cut(s) 434, 1057
BspTNI GGTCTC 1 cut(s) 210
BsrDI GCAATG 1 cut(s) 293
BssECI CCNNGG 5 cut(s) 102, 264, 493, 588, 943
BssMI GATC 2 cut(s) 59, 396
BssNI GRCGYC 3 cut(s) 45, 785, 800
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 4 cut(s) 268, 560, 767, 808
Bst6I CTCTTC 3 cut(s) 620, 650, 897
BstACI GRCGYC 3 cut(s) 45, 785, 800
BstDEI CTNAG 2 cut(s) 408, 813
BstDSI CCRYGG 4 cut(s) 264, 493, 588, 943
BstF5I GGATG 3 cut(s) 598, 885, 926
BstFNI CGCG 4 cut(s) 274, 495, 506, 945
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 62, 399
BstMAI GTCTC 3 cut(s) 210, 278, 364
BstMBI GATC 2 cut(s) 59, 396
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 3 cut(s) 243, 455, 464
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 4 cut(s) 274, 495, 506, 945
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 1 cut(s) 59
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 482, 774
BtgI CCRYGG 4 cut(s) 264, 493, 588, 943
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 598, 885, 926
BtsI GCAGTG 2 cut(s) 121, 444
BtsIMutI CAGTG 3 cut(s) 121, 444, 700
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 532
Cfr42I CCGCGG 2 cut(s) 496, 946
CseI GACGC 3 cut(s) 53, 774, 808
Csp6I GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
CviAII CATG 1 cut(s) 328
CviQI GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
DdeI CTNAG 2 cut(s) 408, 813
DpnI GATC 2 cut(s) 61, 398
DpnII GATC 2 cut(s) 59, 396
DraI TTTAAA 1 cut(s) 937
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 3 cut(s) 620, 650, 897
EarI CTCTTC 3 cut(s) 620, 650, 897
EciI GGCGGA 2 cut(s) 197, 899
Ecl136II GAGCTC 1 cut(s) 303
Eco24I GRGCYC 2 cut(s) 194, 305
Eco31I GGTCTC 1 cut(s) 210
Eco47I GGWCC 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 535
EcoICRI GAGCTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 102
EcoT38I GRGCYC 2 cut(s) 194, 305
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 1 cut(s) 331
FaiI YATR 6 cut(s) 80, 329, 337, 354, 465, 486
FaqI GGGAC 1 cut(s) 644
FatI CATG 1 cut(s) 327
FauI CCCGC 2 cut(s) 938, 950
Fnu4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FokI GGATG 3 cut(s) 605, 892, 933
FriOI GRGCYC 2 cut(s) 194, 305
Fsp4HI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
FspBI CTAG 1 cut(s) 564
GlaI GCGC 1 cut(s) 275
GluI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 2 cut(s) 482, 774
HgaI GACGC 3 cut(s) 53, 774, 808
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 3 cut(s) 45, 785, 800
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 7 cut(s) 107, 402, 722, 905, 991, 1085, 1091
HphI GGTGA 5 cut(s) 130, 509, 634, 692, 837
Hpy166II GTNNAC 2 cut(s) 39, 202
Hpy188I TCNGA 9 cut(s) 59, 181, 401, 411, 618, 814, 910, 1090, 1102
Hpy188III TCNNGA 5 cut(s) 226, 564, 988, 1009, 1045
Hpy8I GTNNAC 2 cut(s) 39, 202
Hpy99I CGWCG 5 cut(s) 560, 745, 748, 767, 802
HpyAV CCTTC 5 cut(s) 230, 613, 700, 709, 911
HpyCH4III ACNGT 4 cut(s) 268, 560, 767, 808
HpyCH4V TGCA 2 cut(s) 13, 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 455, 464
HpyF3I CTNAG 2 cut(s) 408, 813
Hsp92I GRCGYC 3 cut(s) 45, 785, 800
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 1061
KspI CCGCGG 2 cut(s) 496, 946
Kzo9I GATC 2 cut(s) 59, 396
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 3 cut(s) 95, 337, 495
LpnPI CCDG 8 cut(s) 89, 116, 172, 173, 239, 412, 460, 1058
Lsp1109I GCAGC 1 cut(s) 174
LweI GCATC 1 cut(s) 583
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 61, 398
MboI GATC 2 cut(s) 59, 396
MflI RGATCY 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 194, 305
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 2 cut(s) 911, 1050
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 4 cut(s) 101, 396, 914, 1085
MmeI TCCRAC 1 cut(s) 888
Mox20I TGGCCA 1 cut(s) 774
MscI TGGCCA 1 cut(s) 774
MseI TTAA 3 cut(s) 791, 936, 1135
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 4 cut(s) 165, 187, 495, 945
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 4 cut(s) 274, 495, 506, 945
MwoI GCNNNNNNNGC 3 cut(s) 243, 455, 464
NdeII GATC 2 cut(s) 59, 396
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 4 cut(s) 333, 436, 534, 1059
NmeAIII GCCGAG 4 cut(s) 272, 284, 411, 418
PciSI GCTCTTC 1 cut(s) 650
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 986
PfeI GAWTC 3 cut(s) 722, 991, 1085
Pfl23II CGTACG 1 cut(s) 468
PflFI GACNNNGTC 1 cut(s) 808
PkrI GCNGC 6 cut(s) 164, 167, 186, 457, 460, 481
PleI GAGTC 4 cut(s) 101, 396, 913, 1085
PpsI GAGTC 4 cut(s) 101, 396, 913, 1085
Psp124BI GAGCTC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 187
PspGI CCWGG 1 cut(s) 102
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 4 cut(s) 333, 436, 534, 1059
PspPI GGNCC 1 cut(s) 532
PsuI RGATCY 1 cut(s) 59
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 6 cut(s) 363, 470, 503, 997, 1059, 1080
RsaNI GTAC 6 cut(s) 362, 469, 502, 996, 1058, 1079
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 1 cut(s) 305
SacII CCGCGG 2 cut(s) 496, 946
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 3 cut(s) 791, 936, 1135
SatI GCNGC 6 cut(s) 163, 166, 185, 456, 459, 480
Sau3AI GATC 2 cut(s) 59, 396
Sau96I GGNCC 1 cut(s) 532
SchI GAGTC 4 cut(s) 101, 396, 914, 1085
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 194, 305
SfaNI GCATC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 352
Sfr303I CCGCGG 2 cut(s) 496, 946
SgrBI CCGCGG 2 cut(s) 496, 946
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 326
Sse9I AATT 2 cut(s) 911, 1050
SspI AATATT 1 cut(s) 1028
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 4 cut(s) 268, 560, 767, 808
TaqI TCGA 3 cut(s) 110, 317, 980
TasI AATT 2 cut(s) 911, 1050
TauI GCSGC 5 cut(s) 168, 187, 458, 461, 482
TfiI GAWTC 3 cut(s) 722, 991, 1085
Tru1I TTAA 3 cut(s) 791, 936, 1135
Tru9I TTAA 3 cut(s) 791, 936, 1135
TscAI CASTG 3 cut(s) 128, 451, 700
TseI GCWGC 1 cut(s) 162
TspDTI ATGAA 1 cut(s) 255
TspGWI ACGGA 3 cut(s) 545, 577, 720
TspRI CASTG 3 cut(s) 128, 451, 700
Tth111I GACNNNGTC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 2 cut(s) 911, 1050
XbaI TCTAGA 1 cut(s) 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.