Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009792

Physical Location & Seq

Genomic Coordinates Reverse (-)

19136028 .. 19137983

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGAACTGCAGCAGTGTTACAAAGCTCAATCGCGGTTGTCCGAGCAACTCGTGGTGGAAGTAGCAGAGTGCAGAGCTTCAAAAGCTTCACTTCAAGAGAAAGAAGCGGCAGTGGCTGATCTTCAGAAGGAGTTAACTGAAAAAAGGGATGAATGCTCTCAGTTAGCGGCTGACTTGGAAGAGAAGATTAAAGCTTTAGAATTGGTTGTGAATGAGAACAAGGAAATAAGAGCACAGCTAGAAGCAATCTCTATTAGAGCTAGGAACGCTGAGACTGAAAGTAAGGTGTTAATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCAGAACGCCTTAACGAGGCAAATGCACTCTATGAAGATATGATTGAGCGGCTCAGGGCCAGTGGTTTAGAAAAACTTGCTAGGCAGCAGGTAGATGGTGTTGTCCGCCAAAGTGAAGAAGGTGCTGAGTACTATGTGGAGTCAACCATTCCCTCTGCATGCAAGAATAGGATCCCTGCCCATGAAGGAGGTTGTGCATCCATATTATTTGAGTACAATTCTGGCAGATTGATTACTGGTGGACAGGATGGGTCCATTAAAATGTGGGATACAAATAATGGGTCACTAACTCATACACTTCACGGTTGCATTGGTTCTGTTCTGGACCTCACGATTACCCATGACAATAAATCTATCATTGCAGCAAGCAGCTCAAACAAATTGTATGCCTGGGATGTTAGCTCAGGGAGGGTTCGCCACACGCTCACTGGCCACGTGGATAAAGTGTGTGCTGTAGATGTCAGCAAATTCTCAAGTCGTCATGTTGTGAGTGCAGCTTATGATCGTACCATAAAAGTTTGGGATTTGCAGAAAGGTTACTGCACCAATACAATCATGCACCCAAAAAATTGCAATGCTTTGTCATTTAGCATGGATGGACAGACCATATGTTCAGGCCATGTTGATGGAAATCTTCGTTTGTGGGATATTGAGAAAGGAAAGCTACTCAGTGAAGTAGCTGCACATTCAAATGCTGTGACATCTATATCTTTGTCCCGAGATGGCAATGTTATACTGACCAGTGGGAGAGACAATGTGCATAATTTGTTTGATATGCGGTCTCTGGAAGTCCGCCGTACATTAAGAGCCACTGGAAACAGAGTAGCGTCGAATTGGAGCCGATCGATCTCTATCAGTCCAGATGACAATTACGTTGCTGCTGGATCTGCTGACGGTTCTGTGTATATTTGGTCAATATCGAATGCTGACATTGTGAGCACTCTGAAGGAGCACACTGCATCTGTCCTGTGTTGTTCATGGAGCGGGCATGGAAAACCTCTAGCTTCTGCGGACAAGAACGGAATCATCTGTACTTGGACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

456

Amino Acids

50.09

Weight (kDa)

6.04

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG16	PF08614	2 - 113	1.8e-12	Autophagy protein 16 (ATG16)
Beta-prop_WDR36-Utp21_2nd	PF25168	155 - 317	1.1e-16	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	161 - 298	8e-24	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	162 - 249	1.4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	162 - 242	9.7e-10	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	163 - 295	6.1e-11	TEP-1 second beta-propeller
WD40_Gbeta	PF25391	166 - 260	4.3e-08	G protein beta WD-40 repeat protein
WDR55	PF24796	168 - 368	4.4e-20	WDR55
WD40_WDHD1_1st	PF24817	168 - 452	4.6e-30	WDHD1 first WD40 domain
WD40_CDC20-Fz	PF24807	170 - 286	1e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	172 - 296	4.2e-22	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	174 - 381	2.4e-31	Prp19 WD40 domain
Beta-prop_ACSF4	PF13570	181 - 424	3.5e-10	Beta-alanine-activating enzyme, beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	181 - 284	5.2e-08	MABP1/WDR62 second WD40 domain
WD40_Gbeta	PF25391	223 - 412	1e-18	G protein beta WD-40 repeat protein
Beta-prop_WDR90_POC16_2nd	PF23393	224 - 313	5.8e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	224 - 361	6.2e-15	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	224 - 453	1.9e-38	THOC3 beta-propeller domain
NBCH_WD40	PF20426	241 - 418	5.8e-12	Neurobeachin beta propeller domain
WD40	PF00400	245 - 283	2.1e-06	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	247 - 366	1.5e-13	WDR3 second beta-propeller domain
EIF3I	PF24805	249 - 311	1.8e-07	EIF3I
Beta-prop_SCAP	PF24017	262 - 420	4.8e-07	SCAP Beta-propeller
WD40_CDC20-Fz	PF24807	265 - 439	2.2e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	266 - 386	2.6e-11	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	267 - 383	1.4e-24	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	267 - 377	1.4e-12	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	267 - 361	3e-06	WDR90, 4th beta-propeller
Beta-prop_EML	PF23409	273 - 454	4.1e-14	Echinoderm microtubule-associated protein first beta-propeller
ANAPC4_WD40	PF12894	291 - 345	1.9e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_1st	PF25173	295 - 384	2.1e-12	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	296 - 374	3.4e-07	CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_1st	PF24780	297 - 399	8e-07	MABP1/WDR62 first WD40 domain
EIF3I	PF24805	298 - 378	1.7e-11	EIF3I
Beta-prop_VPS8	PF23410	299 - 366	7.4e-06	Vps8 beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	309 - 446	8.9e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	365 - 454	3.4e-11	WDR3 first beta-propeller domain
Beta-prop_EML_2	PF23414	382 - 454	1.4e-08	Echinoderm microtubule-associated protein second beta-propeller
WDR90_beta-prop_4th	PF23342	386 - 452	7.8e-08	WDR90, 4th beta-propeller
WD40_Prp19	PF24814	389 - 454	3e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	390 - 454	1.1e-09	WDR5 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	391 - 454	1.6e-07	IFT140 first beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009792)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50230
fragaria_vesca	FvH4_5g06790 FvH4_5g06790
malus_domestica	MD06G1161200.v1.1 MD14G1166400.v1.1
prunus_persica	Prupe.5G160700_v2.0.a1 Prupe.5G160700_v2.0.a1
pyrus_communis	pycom06g14390 pycom14g13900
rosa_chinensis	RchiOBHm_Chr7g0191761 RchiOBHm_Chr7g0191771
rosa_laevigata	RLG00000004427
rosa_multiflora	Rmu_co8375695.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263550
rosa_rugosa	Rorug06G0511200
rosa_samantha	Rh7AG121000 Rh7BG122700 Rh7CG125600 Rh7DG124300
rosa_wichuraiana	Rw7G010300 Rw7G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccBSI	CCGCTC	2 cut(s)	373, 1308
AccII	CGCG	1 cut(s)	34
AclWI	GGATC	3 cut(s)	490, 503, 1216
AcoI	YGGCCR	1 cut(s)	754
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	2 cut(s)	107, 1289
AcvI	CACGTG	1 cut(s)	760
AfaI	GTAC	5 cut(s)	455, 539, 832, 1123, 1357
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	81, 95, 1014
AjiI	CACGTC	1 cut(s)	1365
AjnI	CCWGG	1 cut(s)	713
Alw21I	GWGCWC	3 cut(s)	235, 1265, 1278
Alw26I	GTCTC	3 cut(s)	266, 1068, 1110
AlwI	GGATC	3 cut(s)	490, 503, 1216
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	3 cut(s)	381, 754, 940
ApeKI	GCWGC	7 cut(s)	10, 409, 686, 693, 818, 1004, 1202
ApoI	RAATTY	1 cut(s)	791
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	3 cut(s)	381, 576, 649
AvaI	CYCGRG	1 cut(s)	1041
AvaII	GGWCC	2 cut(s)	576, 649
BalI	TGGCCA	1 cut(s)	756
BamHI	GGATCC	1 cut(s)	495
BauI	CACGAG	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	760
Bbv12I	GWGCWC	3 cut(s)	235, 1265, 1278
BbvI	GCAGC	7 cut(s)	22, 421, 698, 705, 830, 991, 1189
BccI	CCATC	5 cut(s)	413, 566, 914, 944, 1040
BceAI	ACGGC	1 cut(s)	1104
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	715
BciVI	GTATCC	1 cut(s)	586
BcoDI	GTCTC	3 cut(s)	266, 1068, 1110
BfaI	CTAG	4 cut(s)	239, 261, 405, 1325
BfmI	CTRYAG	2 cut(s)	8, 777
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	586
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	715
Bme18I	GGWCC	2 cut(s)	576, 649
BmeT110I	CYCGRG	1 cut(s)	1041
BmgBI	CACGTC	1 cut(s)	1365
BmgT120I	GGNCC	3 cut(s)	381, 576, 649
BmiI	GGNNCC	3 cut(s)	497, 577, 1163
BmrFI	CCNGG	1 cut(s)	715
BmsI	GCATC	3 cut(s)	313, 530, 1292
Bpu10I	CCTNAGC	2 cut(s)	377, 727
BpuEI	CTTGAG	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	1169
BsaAI	YACGTR	1 cut(s)	760
BsaBI	GATNNNNATC	2 cut(s)	954, 1175
BsaI	GGTCTC	1 cut(s)	1110
BsaJI	CCNNGG	1 cut(s)	714
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	5 cut(s)	384, 565, 757, 1065, 1141
Bse3DI	GCAATG	3 cut(s)	681, 904, 1057
Bse8I	GATNNNNATC	2 cut(s)	954, 1175
BseBI	CCWGG	1 cut(s)	715
BseCI	ATCGAT	1 cut(s)	1169
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	7 cut(s)	154, 309, 328, 521, 577, 724, 925
BseJI	GATNNNNATC	2 cut(s)	954, 1175
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	3 cut(s)	681, 904, 1057
BseMII	CTCAG	6 cut(s)	173, 261, 391, 441, 741, 1006
BseNI	ACTGG	5 cut(s)	384, 565, 757, 1065, 1141
BseXI	GCAGC	7 cut(s)	22, 421, 698, 705, 830, 991, 1189
BsgI	GTGCAG	4 cut(s)	91, 837, 850, 990
Bsh1236I	CGCG	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	1169
BshFI	GGCC	3 cut(s)	383, 756, 942
BshVI	ATCGAT	1 cut(s)	1169
BsiEI	CGRYCG	1 cut(s)	1169
BsiHKAI	GWGCWC	3 cut(s)	235, 1265, 1278
BsiHKCI	CYCGRG	1 cut(s)	1041
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	3 cut(s)	266, 1068, 1110
BsmFI	GGGAC	1 cut(s)	1024
BsmI	GAATGC	2 cut(s)	158, 1252
BsnI	GGCC	3 cut(s)	383, 756, 942
Bso31I	GGTCTC	1 cut(s)	1110
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	3 cut(s)	235, 1265, 1278
Bsp143I	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
BspANI	GGCC	3 cut(s)	383, 756, 942
BspCNI	CTCAG	6 cut(s)	172, 262, 390, 442, 740, 1005
BspDI	ATCGAT	1 cut(s)	1169
BspFNI	CGCG	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	497, 577, 1163
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	3 cut(s)	490, 503, 1216
BspTNI	GGTCTC	1 cut(s)	1110
BsrBI	CCGCTC	2 cut(s)	373, 1308
BsrDI	GCAATG	3 cut(s)	681, 904, 1057
BsrI	ACTGG	5 cut(s)	384, 565, 757, 1065, 1141
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	715
Bst4CI	ACNGT	2 cut(s)	629, 1220
Bst6I	CTCTTC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	760
BstC8I	GCNNGC	3 cut(s)	484, 691, 1310
BstDEI	CTNAG	6 cut(s)	159, 270, 377, 450, 727, 992
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	7 cut(s)	154, 309, 328, 521, 577, 724, 925
BstFNI	CGCG	1 cut(s)	34
BstKTI	GATC	6 cut(s)	121, 498, 829, 1169, 1173, 1211
BstMAI	GTCTC	3 cut(s)	266, 1068, 1110
BstMBI	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
BstMCI	CGRYCG	1 cut(s)	1169
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 113, 266, 1211
BstNI	CCWGG	1 cut(s)	715
BstNSI	RCATGY	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	713
BstSFI	CTRYAG	2 cut(s)	8, 777
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	7 cut(s)	22, 421, 698, 705, 830, 991, 1189
BstX2I	RGATCY	2 cut(s)	495, 1208
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	2 cut(s)	495, 1208
Bsu15I	ATCGAT	1 cut(s)	1169
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	3 cut(s)	383, 756, 942
BsuTUI	ATCGAT	1 cut(s)	1169
BtrI	CACGTC	1 cut(s)	1365
BtsCI	GGATG	7 cut(s)	154, 309, 328, 521, 577, 724, 925
BtsI	GCAGTG	3 cut(s)	20, 117, 1278
BtsIMutI	CAGTG	8 cut(s)	20, 117, 391, 750, 1000, 1072, 1134, 1278
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	484, 691, 1310
CaiI	CAGNNNCTG	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	381, 576, 649
ClaI	ATCGAT	1 cut(s)	1169
CseI	GACGC	1 cut(s)	1140
Csp6I	GTAC	5 cut(s)	454, 538, 831, 1122, 1356
CviAII	CATG	9 cut(s)	483, 506, 665, 806, 880, 916, 944, 1302, 1313
CviQI	GTAC	5 cut(s)	454, 538, 831, 1122, 1356
DdeI	CTNAG	6 cut(s)	159, 270, 377, 450, 727, 992
DpnI	GATC	6 cut(s)	120, 497, 828, 1168, 1172, 1210
DpnII	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	2 cut(s)	419, 1106
Eco31I	GGTCTC	1 cut(s)	1110
Eco47I	GGWCC	2 cut(s)	576, 649
Eco57I	CTGAAG	2 cut(s)	107, 1289
Eco72I	CACGTG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	1041
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	713
FaeI	CATG	9 cut(s)	486, 509, 668, 809, 883, 919, 947, 1305, 1316
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	9 cut(s)	482, 505, 664, 805, 879, 915, 943, 1301, 1312
FauI	CCCGC	1 cut(s)	1301
FauNDI	CATATG	1 cut(s)	932
FokI	GGATG	7 cut(s)	161, 316, 335, 508, 584, 731, 932
FspBI	CTAG	4 cut(s)	239, 261, 405, 1325
HaeIII	GGCC	3 cut(s)	383, 756, 942
HgaI	GACGC	1 cut(s)	1140
Hin1II	CATG	9 cut(s)	486, 509, 668, 809, 883, 919, 947, 1305, 1316
HincII	GTYRAC	2 cut(s)	135, 468
HindII	GTYRAC	2 cut(s)	135, 468
HindIII	AAGCTT	2 cut(s)	84, 192
HinfI	GANTC	2 cut(s)	464, 1347
HpaI	GTTAAC	1 cut(s)	135
Hpy166II	GTNNAC	3 cut(s)	135, 468, 566
Hpy188I	TCNGA	3 cut(s)	43, 126, 1269
Hpy188III	TCNNGA	6 cut(s)	95, 647, 655, 1041, 1109, 1184
Hpy8I	GTNNAC	3 cut(s)	135, 468, 566
Hpy99I	CGWCG	1 cut(s)	1156
HpyAV	CCTTC	5 cut(s)	121, 313, 437, 503, 1264
HpyCH4III	ACNGT	2 cut(s)	629, 1220
HpyCH4IV	ACGT	3 cut(s)	759, 1197, 1364
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 113, 266, 1211
HpyF3I	CTNAG	6 cut(s)	159, 270, 377, 450, 727, 992
HpySE526I	ACGT	3 cut(s)	759, 1197, 1364
Hsp92II	CATG	9 cut(s)	486, 509, 668, 809, 883, 919, 947, 1305, 1316
KspAI	GTTAAC	1 cut(s)	135
Kzo9I	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
LmnI	GCTCC	3 cut(s)	1161, 1273, 1305
Lsp1109I	GCAGC	7 cut(s)	22, 421, 698, 705, 830, 991, 1189
LweI	GCATC	3 cut(s)	313, 530, 1292
MaeI	CTAG	4 cut(s)	239, 261, 405, 1325
MaeII	ACGT	3 cut(s)	759, 1197, 1364
MaeIII	GTNAC	4 cut(s)	17, 606, 860, 1021
MalI	GATC	6 cut(s)	120, 497, 828, 1168, 1172, 1210
MbiI	CCGCTC	2 cut(s)	373, 1308
MboI	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
MboII	GAAGA	6 cut(s)	113, 191, 196, 371, 452, 950
MflI	RGATCY	2 cut(s)	495, 1208
MhlI	GDGCHC	3 cut(s)	235, 1265, 1278
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	9 cut(s)	200, 291, 541, 704, 791, 892, 1087, 1156, 1192
MluNI	TGGCCA	1 cut(s)	756
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	6 cut(s)	334, 487, 506, 662, 726, 1332
Mox20I	TGGCCA	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	6 cut(s)	134, 189, 290, 336, 582, 1127
MslI	CAYNNNNRTG	3 cut(s)	584, 948, 1014
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	715
Mva1269I	GAATGC	2 cut(s)	158, 1252
MvaI	CCWGG	1 cut(s)	715
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	4 cut(s)	83, 113, 266, 1211
NdeI	CATATG	1 cut(s)	932
NdeII	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
NlaIII	CATG	9 cut(s)	486, 509, 668, 809, 883, 919, 947, 1305, 1316
NlaIV	GGNNCC	3 cut(s)	497, 577, 1163
NmuCI	GTSAC	2 cut(s)	606, 1021
NspI	RCATGY	1 cut(s)	486
PaeI	GCATGC	1 cut(s)	486
PctI	GAATGC	2 cut(s)	158, 1252
PfeI	GAWTC	1 cut(s)	1347
Ple19I	CGATCG	1 cut(s)	1169
PleI	GAGTC	1 cut(s)	472
PmaCI	CACGTG	1 cut(s)	760
PmlI	CACGTG	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	472
Ppu21I	YACGTR	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	713
PspCI	CACGTG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	713
PspN4I	GGNNCC	3 cut(s)	497, 577, 1163
PspPI	GGNCC	3 cut(s)	381, 576, 649
PstI	CTGCAG	1 cut(s)	12
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	495, 1208
PvuI	CGATCG	1 cut(s)	1169
RsaI	GTAC	5 cut(s)	455, 539, 832, 1123, 1357
RsaNI	GTAC	5 cut(s)	454, 538, 831, 1122, 1356
RseI	CAYNNNNRTG	3 cut(s)	584, 948, 1014
SaqAI	TTAA	6 cut(s)	134, 189, 290, 336, 582, 1127
Sau3AI	GATC	6 cut(s)	118, 495, 826, 1166, 1170, 1208
Sau96I	GGNCC	3 cut(s)	381, 576, 649
ScaI	AGTACT	1 cut(s)	455
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	715
SduI	GDGCHC	3 cut(s)	235, 1265, 1278
SfaNI	GCATC	3 cut(s)	313, 530, 1292
SfcI	CTRYAG	2 cut(s)	8, 777
SinI	GGWCC	2 cut(s)	576, 649
SmiMI	CAYNNNNRTG	3 cut(s)	584, 948, 1014
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SphI	GCATGC	1 cut(s)	486
Sse9I	AATT	9 cut(s)	200, 291, 541, 704, 791, 892, 1087, 1156, 1192
SspMI	CTAG	4 cut(s)	239, 261, 405, 1325
StyD4I	CCNGG	1 cut(s)	713
TaaI	ACNGT	2 cut(s)	629, 1220
TaiI	ACGT	3 cut(s)	762, 1200, 1367
TaqI	TCGA	3 cut(s)	1154, 1169, 1244
TasI	AATT	9 cut(s)	200, 291, 541, 704, 791, 892, 1087, 1156, 1192
TatI	WGTACW	3 cut(s)	453, 537, 1355
TauI	GCSGC	3 cut(s)	110, 170, 376
TfiI	GAWTC	1 cut(s)	1347
Tru1I	TTAA	6 cut(s)	134, 189, 290, 336, 582, 1127
Tru9I	TTAA	6 cut(s)	134, 189, 290, 336, 582, 1127
TscAI	CASTG	8 cut(s)	20, 117, 391, 757, 1000, 1072, 1141, 1285
TseFI	GTSAC	2 cut(s)	606, 1021
TseI	GCWGC	7 cut(s)	10, 409, 686, 693, 818, 1004, 1202
Tsp45I	GTSAC	2 cut(s)	606, 1021
TspDTI	ATGAA	5 cut(s)	165, 332, 372, 522, 1290
TspGWI	ACGGA	1 cut(s)	1359
TspRI	CASTG	8 cut(s)	20, 117, 391, 757, 1000, 1072, 1141, 1285
VpaK11BI	GGWCC	2 cut(s)	576, 649
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	1 cut(s)	486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XspI	CTAG	4 cut(s)	239, 261, 405, 1325
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.