Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004492

Physical Location & Seq

Genomic Coordinates Reverse (-)

21476271 .. 21477706

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGAAAACTCTGACAAGAGTTGGGAGCTTTTGGGTTTCCAAGAAAGCTAAGGAAGAGATCTCCAACATCACTCAAGATCTCTCTTCATTATCAAACACTGTTGAGGAGAAAGCAAAACGGATATTCAACAAGCTCAAAGGTAAGCAACAAAAACCGTTGCCTGATCTTCTCCGAGAGTACTACCTTCCGCCCGGCCTGTTTCCCCGGAACATAACATGTTACGAATTTGACGAATCAAAGGGCAAGCTCATTGTTTACTTGCCTTCTCCCTGTGAAGTGAGCTTCAAGGACTCATCTGTTGTACGATACAGCATTCGCATCAAAGGAACATTGTCGAGGGGAAAGCTTAGTGGAATCGAAGGAATGAAGACAAAGGTTCTGGTGTGGGTGAAAGTCACTAGCGTTTCTGTCGAGGGCTATAAGTCTGACAAAGTATGGTTCACCGCTGGTATGAAGAAATCACGACCCAAAGATGCTTATGAAATGCCTCGCGATGCCATTATAGTCGAAGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

174

Amino Acids

19.77

Weight (kDa)

9.59

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03350
fragaria_vesca	FvH4_4g30580 FvH4_5g14440
malus_domestica	MD06G1198400.v1.1 MD16G1065800.v1.1
prunus_persica	Prupe.1G281300_v2.0.a1 Prupe.5G199200_v2.0.a1
pyrus_communis	pycom06g17520 pycom16g05740
rosa_chinensis	RchiOBHm_Chr4g0438961 RchiOBHm_Chr7g0182221
rosa_laevigata	RLG00000005139 RLG00000006315
rosa_multiflora	Rmu_sc0000003.1_g000014 Rmu_sc0023005.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271410 Rroxscaffold_4G00311300 Rroxscaffold_5G00379970
rosa_rugosa	Rorug04G0314600 Rorug04G0314700 Rorug06G0446100
rosa_samantha	Rh4AG365300 Rh4BG376500 Rh4CG390600 Rh4DG371200 Rh7AG049200 Rh7BG049300 Rh7CG050600 Rh7DG048500
rosa_wichuraiana	Rw0G007360 Rw0G016910 Rw7G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	495
AciI	CCGC	2 cut(s)	191, 447
AcsI	RAATTY	2 cut(s)	227, 515
AfaI	GTAC	2 cut(s)	182, 306
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	130, 289
AluBI	AGCT	6 cut(s)	30, 50, 136, 250, 285, 349
AluI	AGCT	6 cut(s)	30, 50, 136, 250, 285, 349
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	227, 515
AsuC2I	CCSGG	2 cut(s)	195, 208
AsuHPI	GGTGA	2 cut(s)	403, 436
BbsI	GAAGAC	1 cut(s)	377
BcnI	CCSGG	2 cut(s)	195, 208
BfaI	CTAG	1 cut(s)	402
BglII	AGATCT	2 cut(s)	60, 79
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	195, 208
BmrFI	CCNGG	2 cut(s)	195, 208
BmsI	GCATC	3 cut(s)	330, 466, 487
BpiI	GAAGAC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	195, 208
BsaJI	CCNNGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	495
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	195, 208
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	3 cut(s)	60, 79, 166
Bsp68I	TCGCGA	1 cut(s)	495
BspACI	CCGC	2 cut(s)	191, 447
BspANI	GGCC	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	495
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	60, 79, 166
Bst4CI	ACNGT	2 cut(s)	103, 159
Bst6I	CTCTTC	2 cut(s)	51, 91
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	2 cut(s)	51, 350
BstFNI	CGCG	1 cut(s)	495
BstKTI	GATC	3 cut(s)	63, 82, 169
BstMBI	GATC	3 cut(s)	60, 79, 166
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	2 cut(s)	193, 206
BstUI	CGCG	1 cut(s)	495
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	60, 79
BstYI	RGATCY	2 cut(s)	60, 79
BsuRI	GGCC	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	99
BtuMI	TCGCGA	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	181, 305
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	8 cut(s)	30, 50, 136, 198, 250, 285, 349, 420
CviKI_1	RGCY	8 cut(s)	30, 50, 136, 198, 250, 285, 349, 420
CviQI	GTAC	2 cut(s)	181, 305
DdeI	CTNAG	2 cut(s)	51, 350
DpnI	GATC	3 cut(s)	62, 81, 168
DpnII	GATC	3 cut(s)	60, 79, 166
Eam1104I	CTCTTC	2 cut(s)	51, 91
EarI	CTCTTC	2 cut(s)	51, 91
EciI	GGCGGA	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	515
FaeI	CATG	1 cut(s)	222
FaiI	YATR	7 cut(s)	215, 220, 423, 439, 455, 483, 506
FatI	CATG	1 cut(s)	218
FspBI	CTAG	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	195, 208
Hin1II	CATG	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	236, 293, 357
HpaII	CCGG	2 cut(s)	195, 208
HphI	GGTGA	2 cut(s)	403, 436
Hpy166II	GTNNAC	2 cut(s)	259, 444
Hpy188I	TCNGA	3 cut(s)	15, 176, 430
Hpy188III	TCNNGA	3 cut(s)	77, 465, 494
Hpy8I	GTNNAC	2 cut(s)	259, 444
HpyAV	CCTTC	3 cut(s)	197, 276, 356
HpyCH4III	ACNGT	2 cut(s)	103, 159
HpyF3I	CTNAG	2 cut(s)	51, 350
Hsp92II	CATG	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	60, 79, 166
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	177, 208, 212, 221, 286, 368, 435
LweI	GCATC	3 cut(s)	330, 466, 487
MaeI	CTAG	1 cut(s)	402
MaeIII	GTNAC	2 cut(s)	221, 397
MalI	GATC	3 cut(s)	62, 81, 168
MboI	GATC	3 cut(s)	60, 79, 166
MboII	GAAGA	5 cut(s)	68, 78, 161, 382, 469
MflI	RGATCY	2 cut(s)	60, 79
MluCI	AATT	2 cut(s)	227, 515
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	100, 333, 409, 501
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	195, 208
MspR9I	CCNGG	2 cut(s)	195, 208
Mva1269I	GAATGC	1 cut(s)	315
MvnI	CGCG	1 cut(s)	495
NciI	CCSGG	2 cut(s)	195, 208
NdeII	GATC	3 cut(s)	60, 79, 166
NlaIII	CATG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	397
NruI	TCGCGA	1 cut(s)	495
NspI	RCATGY	1 cut(s)	222
PciI	ACATGT	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	236, 357
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	60, 79
RruI	TCGCGA	1 cut(s)	495
RsaI	GTAC	2 cut(s)	182, 306
RsaNI	GTAC	2 cut(s)	181, 305
Sau3AI	GATC	3 cut(s)	60, 79, 166
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	195, 208
SetI	ASST	9 cut(s)	32, 52, 138, 145, 189, 252, 287, 351, 381
SfaNI	GCATC	3 cut(s)	330, 466, 487
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	227, 515
SsiI	CCGC	2 cut(s)	191, 447
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	193, 206
TaaI	ACNGT	2 cut(s)	103, 159
TaqI	TCGA	4 cut(s)	338, 360, 414, 510
TasI	AATT	2 cut(s)	227, 515
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	236, 357
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	397
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	4 cut(s)	78, 383, 470, 498
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	2 cut(s)	227, 515
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.