Rroxscaffold_3G00271410

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004492
Physical Location & Seq
Forward (+)
63755797 .. 63765236
9440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271410.1

Sequence Viewer

Length: 315 bp
ATGAAGACAAAGGTTATGCTGGTTTATATCAAAGTCACTAGTGTAGCTGTAGAAGGCTACAAGTCTGATAAAGTTTGGTTCACTGCTGGGTTGAAGAGATCAAGACCCAAAGATGCCTACGAAATGCCTCGTGGAATATTTGTTGCAGGTTGGATGGAGCTTCCGGTGGCTGGTTCGGTAGGTTTCCGGCCGGTTCTTGGGGTGGTGCCACCGATTCTGGACGCCTGGGATCAAGTTCTCCAAGGTGTGAGGTGGAGGCAAAAAAGGTTTCAAGGTTTTGTATTCGGATTCAAGGATTTTAGCTTCTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

104

Amino Acids

11.87

Weight (kDa)

10.13

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 205
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 222
AfiI CCNNNNNNNGG 2 cut(s) 170, 197
AgsI TTSAA 4 cut(s) 94, 272, 292, 310
AhlI ACTAGT 1 cut(s) 38
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 47, 160, 303
AluI AGCT 3 cut(s) 47, 160, 303
AlwI GGATC 1 cut(s) 237
AoxI GGCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 205
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 38
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 226
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 225, 241
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 197
Bse118I RCCGGY 1 cut(s) 190
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 2 cut(s) 225, 241
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 2 cut(s) 170, 197
BseX3I CGGCCG 1 cut(s) 188
BseYI CCCAGC 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 205
BsiEI CGRYCG 1 cut(s) 191
BsiSI CCGG 3 cut(s) 164, 187, 191
BslI CCNNNNNNNGG 2 cut(s) 170, 197
BsnI GGCC 1 cut(s) 190
Bsp143I GATC 2 cut(s) 98, 229
BspANI GGCC 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 225, 241
BssMI GATC 2 cut(s) 98, 229
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 241
Bst2BI CACGAG 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 222
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 2 cut(s) 101, 232
BstMBI GATC 2 cut(s) 98, 229
BstMCI CGRYCG 1 cut(s) 191
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 11
BstZI CGGCCG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 190
CseI GACGC 1 cut(s) 230
CviJI RGCY 6 cut(s) 47, 57, 160, 170, 190, 303
CviKI_1 RGCY 6 cut(s) 47, 57, 160, 170, 190, 303
DpnI GATC 2 cut(s) 100, 231
DpnII GATC 2 cut(s) 98, 229
EaeI YGGCCR 1 cut(s) 188
EagI CGGCCG 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaiI YATR 2 cut(s) 17, 27
FokI GGATG 1 cut(s) 166
FspBI CTAG 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 190
HapII CCGG 3 cut(s) 164, 187, 191
HgaI GACGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 222
HinfI GANTC 2 cut(s) 214, 288
HpaII CCGG 3 cut(s) 164, 187, 191
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 67, 287
Hpy188III TCNNGA 3 cut(s) 102, 218, 307
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 98, 229
LmnI GCTCC 1 cut(s) 157
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 34
MalI GATC 2 cut(s) 100, 231
MboI GATC 2 cut(s) 98, 229
MboII GAAGA 2 cut(s) 16, 106
MluCI AATT 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 3 cut(s) 138, 243, 249
MspI CCGG 3 cut(s) 164, 187, 191
MspR9I CCNGG 1 cut(s) 226
MvaI CCWGG 1 cut(s) 226
NdeII GATC 2 cut(s) 98, 229
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 214, 288
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 98, 229
ScrFI CCNGG 1 cut(s) 226
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 48
SpeI ACTAGT 1 cut(s) 38
Sse9I AATT 1 cut(s) 310
SspI AATATT 1 cut(s) 138
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 241
TasI AATT 1 cut(s) 310
TfiI GAWTC 2 cut(s) 214, 288
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 88
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.