Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000003.1

Orthogroup ID

OG0004492

Physical Location & Seq

Genomic Coordinates Forward (+)

73912 .. 76018

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000003.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggagaacgctctaacaaaagttattgggagcaattggattgccaaaaaagccaaggaagagatcaacagcatcactgatgacctctctttactctcaaacgctgtggagggaaaggcaaaatgggttttcaacaagcttaaaggcaagccactgagaactttgccggatcttctccggctgtacaatcttcctccaggcctgtttccccgaaacataaaatgctacgagttcgacgaatcaaaggggaagctcattgtgtacttgacctctgcctgtgaggtgagcttcaaggactcatctgtggtaaggtacgcagttcgagtcaaagcaacattgacaaggggaaagctggatgtaatagaaggaatgaagacaaaggttatgctggtttatatcaaagtcactagtgtagctgtagaaggctacaagtctgataaagtttggttcactgctgggttgaagagatcaagacccaaagatgcctacgaaatgcctcgtgatgccttcagtgttgatgaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

175

Amino Acids

19.79

Weight (kDa)

9.54

Isoelectric Point (pI)

26.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03350
fragaria_vesca	FvH4_4g30580 FvH4_5g14440
malus_domestica	MD06G1198400.v1.1 MD16G1065800.v1.1
prunus_persica	Prupe.1G281300_v2.0.a1 Prupe.5G199200_v2.0.a1
pyrus_communis	pycom06g17520 pycom16g05740
rosa_chinensis	RchiOBHm_Chr4g0438961 RchiOBHm_Chr7g0182221
rosa_laevigata	RLG00000005139 RLG00000006315
rosa_multiflora	Rmu_sc0000003.1_g000014 Rmu_sc0023005.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271410 Rroxscaffold_4G00311300 Rroxscaffold_5G00379970
rosa_rugosa	Rorug04G0314600 Rorug04G0314700 Rorug06G0446100
rosa_samantha	Rh4AG365300 Rh4BG376500 Rh4CG390600 Rh4DG371200 Rh7AG049200 Rh7BG049300 Rh7CG050600 Rh7DG048500
rosa_wichuraiana	Rw0G007360 Rw0G016910 Rw7G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	3 cut(s)	185, 263, 314
AgsI	TTSAA	3 cut(s)	133, 292, 463
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	5 cut(s)	139, 253, 288, 352, 416
AluI	AGCT	5 cut(s)	139, 253, 288, 352, 416
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	521
AsuHPI	GGTGA	1 cut(s)	295
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	198
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	81, 472, 493
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	361
BseMII	CTCAG	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	167, 178
BsnI	GGCC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	63, 169, 467
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	63, 169, 467
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	2 cut(s)	54, 458
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	3 cut(s)	66, 172, 470
BstMBI	GATC	3 cut(s)	63, 169, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	417
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	4 cut(s)	75, 152, 450, 517
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	184, 262, 313
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviQI	GTAC	3 cut(s)	184, 262, 313
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	3 cut(s)	65, 171, 469
DpnII	GATC	3 cut(s)	63, 169, 467
Eam1104I	CTCTTC	2 cut(s)	54, 458
EarI	CTCTTC	2 cut(s)	54, 458
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	3 cut(s)	218, 386, 396
FokI	GGATG	1 cut(s)	368
FspBI	CTAG	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	2 cut(s)	167, 178
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	239, 296, 324
HpaII	CCGG	2 cut(s)	167, 178
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	262, 450
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	2 cut(s)	471, 500
Hpy8I	GTNNAC	2 cut(s)	262, 450
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	359, 416, 517
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	63, 169, 467
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	180, 183, 191, 210, 215, 289, 338, 374, 441
LweI	GCATC	3 cut(s)	81, 472, 493
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	3 cut(s)	65, 171, 469
MboI	GATC	3 cut(s)	63, 169, 467
MboII	GAAGA	5 cut(s)	71, 164, 182, 385, 475
MfeI	CAATTG	1 cut(s)	34
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	2 cut(s)	34, 521
MlyI	GAGTC	2 cut(s)	290, 333
MnlI	CCTC	6 cut(s)	95, 103, 204, 274, 280, 507
MseI	TTAA	2 cut(s)	141, 526
MspI	CCGG	2 cut(s)	167, 178
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	63, 169, 467
NmuCI	GTSAC	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	239
PleI	GAGTC	2 cut(s)	290, 332
PpsI	GAGTC	2 cut(s)	290, 332
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	185, 263, 314
RsaNI	GTAC	3 cut(s)	184, 262, 313
SaqAI	TTAA	2 cut(s)	141, 526
Sau3AI	GATC	3 cut(s)	63, 169, 467
SchI	GAGTC	2 cut(s)	290, 333
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	81, 472, 493
SfcI	CTRYAG	1 cut(s)	417
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	2 cut(s)	34, 521
SseBI	AGGCCT	1 cut(s)	201
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	2 cut(s)	234, 322
TasI	AATT	2 cut(s)	34, 521
TatI	WGTACW	2 cut(s)	183, 261
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	141, 526
Tru9I	TTAA	2 cut(s)	141, 526
TscAI	CASTG	4 cut(s)	82, 159, 457, 517
TseFI	GTSAC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	4 cut(s)	82, 159, 457, 517
XapI	RAATTY	1 cut(s)	521
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.