Rh4CG390600

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004492
Physical Location & Seq
Forward (+)
64109139 .. 64110430
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG390600.1

Sequence Viewer

Length: 573 bp
ATGGAGAAGGCTCTAACCAAAGTGAACAGCTTGAAAATTGGGAGCTCATGGATCTCAAAGAAAGCCAAGGAAGAGTTGTCTAACATCAGCGACGACATCACCACTTTCTCAAGTACCGTTGAGCAGAAGGCAAAATGGATTTTCGACAAGCTAAAAGAGGTTGAACTTACTTTCTTTGCTGATTCTCCAACAGGAAAGACACCAAAGAGCTTACCAGAACTCCTCCGAGAGTACAACTTGCCACCAGGGCTCTTTCCAGCAAACATAACCTGTTATGAGTTTACCGAGACAAATGCCAAGCTGATTGTGTATTTGCCGGCTCCATCTGAAGTTACCTTCAAGGATTCATCTGCTATAAGGTATGCAACCCGGGTAAAGGCAAATCTGTTGAGGGGAAAGCTCATAGGGATAGAGGGAATGAAGACGAAGGTTGTTGTATGGGTTAAGGTTACTTGTGTAGCAGTGGAAAGTTCCAAGTCTGACAAGGTCTGGTTTACTGCTGGCGTTAAGAAGTCAAGATCCAAGGATGTCTACATCACACCCCAAGATGCTATTAGGGTACAAGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

190

Amino Acids

21.31

Weight (kDa)

9.38

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 72 - 178 1.9e-26 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 531
AclWI GGATC 2 cut(s) 59, 513
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 3 cut(s) 115, 233, 561
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 3 cut(s) 34, 164, 340
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 6 cut(s) 30, 45, 151, 210, 301, 400
AluI AGCT 6 cut(s) 30, 45, 151, 210, 301, 400
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 59, 513
Ama87I CYCGRG 1 cut(s) 369
AsuC2I CCSGG 2 cut(s) 370, 371
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 369
BaeI ACNNNNGTAYC 1 cut(s) 551
BanII GRGCYC 2 cut(s) 47, 252
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 47
BccI CCATC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 2 cut(s) 370, 371
BcoDI GTCTC 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 247
Bme1390I CCNGG 3 cut(s) 246, 370, 371
BmeT110I CYCGRG 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 3 cut(s) 246, 370, 371
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 2 cut(s) 370, 371
BsaJI CCNNGG 4 cut(s) 66, 245, 369, 522
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 316
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 4 cut(s) 66, 245, 369, 522
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 376
BseRI GAGGAG 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 317, 370
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 47, 252
Bsp143I GATC 2 cut(s) 51, 518
BspLI GGNNCC 1 cut(s) 321
BspPI GGATC 2 cut(s) 59, 513
BsrFI RCCGGY 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 4 cut(s) 66, 245, 369, 522
BssMI GATC 2 cut(s) 51, 518
BssT1I CCWWGG 2 cut(s) 66, 522
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 318, 502
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 2 cut(s) 54, 521
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 51, 518
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 244, 368, 369
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 2 cut(s) 51, 518
BstYI RGATCY 2 cut(s) 51, 518
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 2 cut(s) 318, 502
Cfr10I RCCGGY 1 cut(s) 316
Cfr9I CCCGGG 1 cut(s) 369
Csp6I GTAC 3 cut(s) 114, 232, 560
CviAII CATG 1 cut(s) 48
CviQI GTAC 3 cut(s) 114, 232, 560
DpnI GATC 2 cut(s) 53, 520
DpnII GATC 2 cut(s) 51, 518
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 66, 522
Eco24I GRGCYC 2 cut(s) 47, 252
Eco53kI GAGCTC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 348
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 66, 522
EcoT38I GRGCYC 2 cut(s) 47, 252
ErhI CCWWGG 2 cut(s) 66, 522
FaeI CATG 1 cut(s) 51
FaiI YATR 7 cut(s) 49, 266, 276, 356, 363, 404, 439
FatI CATG 1 cut(s) 47
FblI GTMKAC 1 cut(s) 531
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 2 cut(s) 47, 252
HapII CCGG 2 cut(s) 317, 370
Hin1II CATG 1 cut(s) 51
HinfI GANTC 2 cut(s) 182, 344
HpaII CCGG 2 cut(s) 317, 370
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 25, 282, 495, 532
Hpy188I TCNGA 3 cut(s) 227, 328, 481
Hpy188III TCNNGA 1 cut(s) 516
Hpy8I GTNNAC 4 cut(s) 25, 282, 495, 532
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 121, 346, 421
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
Hsp92II CATG 1 cut(s) 51
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 51, 518
LmnI GCTCC 2 cut(s) 42, 325
LweI GCATC 1 cut(s) 538
MaeIII GTNAC 2 cut(s) 331, 448
MalI GATC 2 cut(s) 53, 520
MboI GATC 2 cut(s) 51, 518
MboII GAAGA 2 cut(s) 83, 433
MflI RGATCY 2 cut(s) 51, 518
MhlI GDGCHC 2 cut(s) 47, 252
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 151, 233, 384, 406
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 2 cut(s) 444, 507
MspI CCGG 2 cut(s) 317, 370
MspR9I CCNGG 3 cut(s) 246, 370, 371
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 247
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 2 cut(s) 370, 371
NdeII GATC 2 cut(s) 51, 518
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 1 cut(s) 321
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 2 cut(s) 182, 344
PflFI GACNNNGTC 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 321
PsuI RGATCY 2 cut(s) 51, 518
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 3 cut(s) 115, 233, 561
RsaNI GTAC 3 cut(s) 114, 232, 560
SacI GAGCTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 444, 507
Sau3AI GATC 2 cut(s) 51, 518
ScrFI CCNGG 3 cut(s) 246, 370, 371
SduI GDGCHC 2 cut(s) 47, 252
SfaNI GCATC 1 cut(s) 538
SmaI CCCGGG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 1 cut(s) 36
SstI GAGCTC 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 244, 368, 369
StyI CCWWGG 2 cut(s) 66, 522
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 231
TfiI GAWTC 2 cut(s) 182, 344
Tru1I TTAA 2 cut(s) 444, 507
Tru9I TTAA 2 cut(s) 444, 507
TscAI CASTG 1 cut(s) 468
TspDTI ATGAA 2 cut(s) 336, 434
TspMI CCCGGG 1 cut(s) 369
TspRI CASTG 1 cut(s) 468
Tth111I GACNNNGTC 1 cut(s) 485
XmaI CCCGGG 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.