Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004492

Physical Location & Seq

Genomic Coordinates Reverse (-)

33693657 .. 33708495

Gene Structure 14839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCAGCCGATAAGGAGAGTTCAATCCAAGTGAAGGAGAAAATAGTAAACGGCGGTGCCCCACAGGCACGAGCACGGGCGAGAATGGGAGCAGCTGTATTCTTACCCAGTTTGCTCAAAATCCAGGCTCGAATGTTACCGTCCGGTGTGCTTATTAGGCGGATGAGCTCGCCGAGAAAGCTAACGTGTCGAGGACCAACCCTCCGGTGCTGCGCATCTCCGGCGTCGATCCACTCCCCGATCTTCACCTCCGGCGCATCGTCAAGTTCTTACCCGATTCAAGTGTTCGATTCACTCGCCGTCTCCTTGGCCTCACCGAGCATTCGATCCACTTCGCTGTGCATCACCGGCGTTCAATCCACTCCGCCGTTGCTCGCTGCTGTATCCTCCGGTGCTCGATGCGGCCGGTGGCAAAGGAGAAAGGAGAAAGATGATTTGGTGCCCGAGCTATTCTCTGGATCAAGAGGCTTCTGCTACCAAAATTTGGTGGAAATTAGAAGTCCAGAAGATGGTGACCGGTGGAATATTTGTTGCGAGTTGTATAGAGCTTTCGGTGGCTGGTTCGGTAGGTTTTCGGCCGTTCTTGGGGTGGGGCTGCCGGTTCTGGACTCTTGGGATCGAGTTCTTCAAGGTGTGAGGTGGAGGCAGAAAAGGCTTCAAGGTTTTGTATTCGGATTTAAGGTTTTTAGCTTCTTGAATCGGGGTTTGGCTATTTGTTTCGGGGTTAGAGCTTCATGCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.06

Weight (kDa)

10.42

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03350
fragaria_vesca	FvH4_4g30580 FvH4_5g14440
malus_domestica	MD06G1198400.v1.1 MD16G1065800.v1.1
prunus_persica	Prupe.1G281300_v2.0.a1 Prupe.5G199200_v2.0.a1
pyrus_communis	pycom06g17520 pycom16g05740
rosa_chinensis	RchiOBHm_Chr4g0438961 RchiOBHm_Chr7g0182221
rosa_laevigata	RLG00000005139 RLG00000006315
rosa_multiflora	Rmu_sc0000003.1_g000014 Rmu_sc0023005.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271410 Rroxscaffold_4G00311300 Rroxscaffold_5G00379970
rosa_rugosa	Rorug04G0314600 Rorug04G0314700 Rorug06G0446100
rosa_samantha	Rh4AG365300 Rh4BG376500 Rh4CG390600 Rh4DG371200 Rh7AG049200 Rh7BG049300 Rh7CG050600 Rh7DG048500
rosa_wichuraiana	Rw0G007360 Rw0G016910 Rw7G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	214
AccB1I	GGYRCC	2 cut(s)	56, 439
AccB7I	CCANNNNNTGG	2 cut(s)	484, 509
AciI	CCGC	4 cut(s)	54, 160, 365, 402
AclWI	GGATC	4 cut(s)	223, 321, 466, 624
AcoI	YGGCCR	2 cut(s)	403, 576
AcsI	RAATTY	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	4 cut(s)	34, 484, 509, 585
AflIII	ACRYGT	1 cut(s)	185
AgeI	ACCGGT	1 cut(s)	516
AgsI	TTSAA	6 cut(s)	24, 281, 356, 629, 659, 697
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	4 cut(s)	419, 451, 689, 721
AluBI	AGCT	7 cut(s)	95, 168, 181, 448, 548, 690, 731
AluI	AGCT	7 cut(s)	95, 168, 181, 448, 548, 690, 731
Alw21I	GWGCWC	3 cut(s)	76, 170, 397
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	4 cut(s)	223, 321, 466, 624
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	3 cut(s)	309, 403, 576
ApeKI	GCWGC	4 cut(s)	92, 210, 377, 595
ApoI	RAATTY	1 cut(s)	481
AsiGI	ACCGGT	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	215, 257
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	238, 306, 337, 524
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	2 cut(s)	61, 444
BanI	GGYRCC	2 cut(s)	56, 439
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	76, 170, 397
BbvI	GCAGC	4 cut(s)	104, 197, 364, 582
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	4 cut(s)	67, 284, 352, 563
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	307
BfuI	GTATCC	1 cut(s)	394
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	5 cut(s)	93, 211, 378, 403, 596
BlsI	GCNGC	5 cut(s)	94, 212, 379, 404, 597
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	58, 441
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	4 cut(s)	224, 266, 351, 389
BmuI	ACTGGG	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	437, 469
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	4 cut(s)	143, 204, 389, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 186, 216
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 484, 509, 585
Bse118I	RCCGGY	4 cut(s)	347, 405, 516, 598
Bse1I	ACTGG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	34, 484, 509, 585
BseNI	ACTGG	1 cut(s)	108
BseSI	GKGCMC	2 cut(s)	61, 444
BseX3I	CGGCCG	2 cut(s)	403, 576
BseXI	GCAGC	4 cut(s)	104, 197, 364, 582
Bsh1285I	CGRYCG	2 cut(s)	406, 579
BshFI	GGCC	3 cut(s)	311, 405, 578
BshNI	GGYRCC	2 cut(s)	56, 439
BshTI	ACCGGT	1 cut(s)	516
BsiEI	CGRYCG	2 cut(s)	406, 579
BsiHKAI	GWGCWC	3 cut(s)	76, 170, 397
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	9 cut(s)	144, 205, 221, 252, 348, 390, 406, 517, 599
BslI	CCNNNNNNNGG	4 cut(s)	34, 484, 509, 585
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	311, 405, 578
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	5 cut(s)	61, 76, 170, 397, 444
Bsp143I	GATC	5 cut(s)	228, 240, 326, 458, 616
BspACI	CCGC	4 cut(s)	54, 160, 365, 402
BspANI	GGCC	3 cut(s)	311, 405, 578
BspLI	GGNNCC	2 cut(s)	58, 441
BspPI	GGATC	4 cut(s)	223, 321, 466, 624
BspT107I	GGYRCC	2 cut(s)	56, 439
BsrFI	RCCGGY	4 cut(s)	347, 405, 516, 598
BsrI	ACTGG	1 cut(s)	108
BssAI	RCCGGY	4 cut(s)	347, 405, 516, 598
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	228, 240, 326, 458, 616
BssNI	GRCGYC	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	170, 375
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	215, 257
BstKTI	GATC	5 cut(s)	231, 243, 329, 461, 619
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	5 cut(s)	228, 240, 326, 458, 616
BstMCI	CGRYCG	2 cut(s)	406, 579
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 157, 178, 221, 348, 652
BstNI	CCWGG	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	2 cut(s)	61, 444
BstV1I	GCAGC	4 cut(s)	104, 197, 364, 582
BstZI	CGGCCG	2 cut(s)	403, 576
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	311, 405, 578
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	170, 375
CfoI	GCGC	2 cut(s)	215, 257
Cfr10I	RCCGGY	4 cut(s)	347, 405, 516, 598
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	213
CspAI	ACCGGT	1 cut(s)	516
CviAII	CATG	1 cut(s)	735
DpnI	GATC	5 cut(s)	230, 242, 328, 460, 618
DpnII	GATC	5 cut(s)	228, 240, 326, 458, 616
EaeI	YGGCCR	2 cut(s)	403, 576
EagI	CGGCCG	2 cut(s)	403, 576
EciI	GGCGGA	2 cut(s)	175, 354
Ecl136II	GAGCTC	1 cut(s)	168
EclXI	CGGCCG	2 cut(s)	403, 576
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	194
Eco52I	CGGCCG	2 cut(s)	403, 576
Eco53kI	GAGCTC	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	443
Eco91I	GGTNACC	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	168
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	1 cut(s)	738
FaiI	YATR	2 cut(s)	543, 736
FatI	CATG	1 cut(s)	734
Fnu4HI	GCNGC	5 cut(s)	93, 211, 378, 403, 596
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	93, 211, 378, 403, 596
FspI	TGCGCA	1 cut(s)	214
GlaI	GCGC	2 cut(s)	214, 256
GluI	GCNGC	5 cut(s)	93, 211, 378, 403, 596
HaeIII	GGCC	3 cut(s)	311, 405, 578
HapII	CCGG	9 cut(s)	144, 205, 221, 252, 348, 390, 406, 517, 599
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	2 cut(s)	215, 257
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	738
Hin6I	GCGC	2 cut(s)	213, 255
HinP1I	GCGC	2 cut(s)	213, 255
HinfI	GANTC	4 cut(s)	277, 290, 608, 697
HpaII	CCGG	9 cut(s)	144, 205, 221, 252, 348, 390, 406, 517, 599
HphI	GGTGA	4 cut(s)	238, 306, 337, 524
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	674
Hpy188III	TCNNGA	5 cut(s)	456, 462, 503, 605, 694
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 157, 178, 221, 348, 652
HpySE526I	ACGT	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	738
HspAI	GCGC	2 cut(s)	213, 255
Kzo9I	GATC	5 cut(s)	228, 240, 326, 458, 616
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	4 cut(s)	104, 197, 364, 582
LweI	GCATC	4 cut(s)	224, 266, 351, 389
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	2 cut(s)	135, 512
MalI	GATC	5 cut(s)	230, 242, 328, 460, 618
MboI	GATC	5 cut(s)	228, 240, 326, 458, 616
MboII	GAAGA	3 cut(s)	235, 518, 617
MhlI	GDGCHC	5 cut(s)	61, 76, 170, 397, 444
MluCI	AATT	2 cut(s)	481, 492
MlyI	GAGTC	1 cut(s)	602
MnlI	CCTC	8 cut(s)	185, 212, 259, 322, 397, 458, 630, 636
MseI	TTAA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	9 cut(s)	144, 205, 221, 252, 348, 390, 406, 517, 599
MspR9I	CCNGG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	6 cut(s)	65, 157, 178, 221, 348, 652
NdeII	GATC	5 cut(s)	228, 240, 326, 458, 616
NlaIII	CATG	1 cut(s)	738
NlaIV	GGNNCC	2 cut(s)	58, 441
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	512
NsbI	TGCGCA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	277, 290, 697
PflMI	CCANNNNNTGG	2 cut(s)	484, 509
PinAI	ACCGGT	1 cut(s)	516
PkrI	GCNGC	5 cut(s)	94, 212, 379, 404, 597
PleI	GAGTC	1 cut(s)	602
PpsI	GAGTC	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	123
PspEI	GGTNACC	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	58, 441
PspPI	GGNCC	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	5 cut(s)	93, 211, 378, 403, 596
Sau3AI	GATC	5 cut(s)	228, 240, 326, 458, 616
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	5 cut(s)	61, 76, 170, 397, 444
SfaNI	GCATC	4 cut(s)	224, 266, 351, 389
SgrAI	CRCCGGYG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	2 cut(s)	481, 492
SsiI	CCGC	4 cut(s)	54, 160, 365, 402
SspI	AATATT	1 cut(s)	526
SstI	GAGCTC	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	7 cut(s)	130, 190, 227, 288, 325, 397, 619
TasI	AATT	2 cut(s)	481, 492
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	277, 290, 697
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	4 cut(s)	92, 210, 377, 595
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	1 cut(s)	723
Van91I	CCANNNNNTGG	2 cut(s)	484, 509
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.