Rorug04G0314600

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004492
Physical Location & Seq
Reverse (-)
48946201 .. 48947838
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0314600.1

Sequence Viewer

Length: 1128 bp
ATGGACGACGACAGCTTCAGACTCCGGGCGGACAAGGTTTTCGGATCCCTCTCTGCGTCGCTCTCCTCGTCTCTCCAACCACCGCAGTCCTCTCCCTGGTCCGTCGCCGGCGCCGAGGTCGAGCGCCGCCAATGGAGGCGCGCCACCGACGCCCCTGACCGAGACGAAACGCCCTGTGCGTCGTCGTTTCAGGGTGAATTTGGAATCGGATCTTCCATAGGCATGGACCCTACTCTGGATTTCGAGGAAGAGGAAGATGAATATGACAAAGTGGCTTCGGGTGCTGAAGCTGTTGATGATGATCGTTTGTTTATGGACGATGTTACCCACCATGCCTCTTATTTGAACTCTTACAATGTATTGGTTGGTAAGGATTCGCGTGCGAATCACCTGGCTGCCAGGCACAGGCTGAAAGAAGATGATGCTGAAGCTCAGAACCCTAGTTCTACACCAGTGGCTTCTGCTGCACTAGTTAAGCAACAGTTTGCTAAATCACCTGAAGATGGCGGTCAGCCAAAGCCTATACTGAAAAGGAAAGACAATTCCTCGGATAGCAAGTCCCGGAAACGTGTTAGGTTTGACCCTGCTTTTGTAGATCAGAGTGATGGTGAAGAATCATCCGGAAAAGTTCAAAACTTGGTTTCGGATAATGGTTCTGGATTAACTGCTTCCCGGGTTTCATTGAAGAAAAAGACGGCTTCTCAGGTTCCTGATTATTTGGTGAATCCTTCAAAGTATACGTGTTATAGTTTTGATTCAACAAGTGAAGTTGATGAAGGTGGCAACACCAAGGCTTGTATGGACTACATTACTCAGGTTGAAACCTCAGGGTCAGAGATGGAGATGGAGGATGCTTCACCTCAACTTCCCAAGTCTGTGACTTTTGTTCCAAAGAAAGAGACTGTCGATGGTAGCACAAGAACAAAGCAGGACGAGGAAGATGATGATAAGCAGTCCTTAAATATAAAAGGCGTCGCTGTTGGCATTGCAGCTATGGAAGAAAATGAAATCAGTGCGGCAGAGGAGGAAGACAAGTCAGAGCAAAATGCAGCCGTTTTAAGTGATTGTTTATCAAAAAGTGGTCGGAAGTTTCGAACCAAGCCAATGTCAGATGATGAGTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

375

Amino Acids

40.92

Weight (kDa)

4.59

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TSSC4 PF15264 229 - 283 5.8e-07 Tumour suppressing sub-chromosomal transferable candidate 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 737
AccII CGCG 2 cut(s) 141, 379
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 5 cut(s) 29, 83, 127, 507, 1016
AclWI GGATC 3 cut(s) 39, 52, 217
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 3 cut(s) 306, 447, 519
AcyI GRCGYC 3 cut(s) 111, 150, 972
AfiI CCNNNNNNNGG 4 cut(s) 96, 235, 405, 503
AflIII ACRYGT 2 cut(s) 568, 740
AgsI TTSAA 6 cut(s) 346, 632, 685, 732, 759, 821
AhlI ACTAGT 1 cut(s) 469
AjnI CCWGG 3 cut(s) 95, 390, 398
AluBI AGCT 4 cut(s) 15, 290, 431, 992
AluI AGCT 4 cut(s) 15, 290, 431, 992
Alw26I GTCTC 3 cut(s) 75, 156, 893
AlwI GGATC 3 cut(s) 39, 52, 217
Ama87I CYCGRG 1 cut(s) 672
Aor13HI TCCGGA 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 395, 464, 989, 1049
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 4 cut(s) 23, 55, 572, 604
AscI GGCGCGCC 1 cut(s) 139
AspLEI GCGC 4 cut(s) 113, 126, 141, 143
AspS9I GGNCC 2 cut(s) 99, 226
AsuC2I CCSGG 4 cut(s) 26, 562, 673, 674
AsuHPI GGTGA 6 cut(s) 206, 380, 486, 620, 733, 849
AsuII TTCGAA 1 cut(s) 1093
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 2 cut(s) 99, 226
AxyI CCTNAGG 1 cut(s) 826
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 1035
BbvI GCAGC 4 cut(s) 382, 451, 1001, 1061
BccI CCATC 5 cut(s) 497, 599, 832, 838, 902
BceAI ACGGC 2 cut(s) 711, 1037
BciT130I CCWGG 3 cut(s) 97, 392, 400
BcnI CCSGG 4 cut(s) 26, 562, 673, 674
BcoDI GTCTC 3 cut(s) 75, 156, 893
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 2 cut(s) 441, 470
BfoI RGCGCY 2 cut(s) 114, 127
BisI GCNGC 6 cut(s) 127, 396, 465, 990, 1017, 1050
BlsI GCNGC 6 cut(s) 128, 397, 466, 991, 1018, 1051
Bme1390I CCNGG 7 cut(s) 26, 97, 392, 400, 562, 673, 674
Bme18I GGWCC 2 cut(s) 99, 226
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 2 cut(s) 99, 226
BmiI GGNNCC 4 cut(s) 46, 112, 228, 708
BmrFI CCNGG 7 cut(s) 26, 97, 392, 400, 562, 673, 674
BmsI GCATC 2 cut(s) 412, 841
BpiI GAAGAC 1 cut(s) 1035
Bpu14I TTCGAA 1 cut(s) 1093
BpuMI CCSGG 4 cut(s) 26, 562, 673, 674
BsaAI YACGTR 1 cut(s) 741
BsaBI GATNNNNATC 1 cut(s) 300
BsaHI GRCGYC 3 cut(s) 111, 150, 972
BsaJI CCNNGG 5 cut(s) 95, 114, 546, 672, 789
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 235, 405, 503
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 826
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 300
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 3 cut(s) 97, 392, 400
BseDI CCNNGG 5 cut(s) 95, 114, 546, 672, 789
BseGI GGATG 2 cut(s) 617, 856
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 4 cut(s) 96, 235, 405, 503
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 4 cut(s) 446, 716, 827, 840
BseNI ACTGG 1 cut(s) 452
BsePI GCGCGC 1 cut(s) 139
BseRI GAGGAG 2 cut(s) 55, 1037
BseXI GCAGC 4 cut(s) 382, 451, 1001, 1061
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 141, 379
BshNI GGYRCC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 672
BsiSI CCGG 5 cut(s) 25, 108, 562, 621, 673
BslFI GGGAC 1 cut(s) 544
BslI CCNNNNNNNGG 4 cut(s) 96, 235, 405, 503
BsmAI GTCTC 3 cut(s) 75, 156, 893
BsmBI CGTCTC 2 cut(s) 75, 156
BsmFI GGGAC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 672
Bsp119I TTCGAA 1 cut(s) 1093
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 4 cut(s) 44, 209, 301, 595
BspACI CCGC 5 cut(s) 29, 83, 127, 507, 1016
BspCNI CTCAG 4 cut(s) 445, 715, 826, 839
BspEI TCCGGA 1 cut(s) 620
BspFNI CGCG 2 cut(s) 141, 379
BspLI GGNNCC 4 cut(s) 46, 112, 228, 708
BspPI GGATC 3 cut(s) 39, 52, 217
BspT104I TTCGAA 1 cut(s) 1093
BspT107I GGYRCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 5 cut(s) 95, 114, 546, 672, 789
BssHII GCGCGC 1 cut(s) 139
BssMI GATC 4 cut(s) 44, 209, 301, 595
BssNAI GTATAC 1 cut(s) 738
BssNI GRCGYC 3 cut(s) 111, 150, 972
BssT1I CCWWGG 1 cut(s) 789
Bst1107I GTATAC 1 cut(s) 738
Bst2UI CCWGG 3 cut(s) 97, 392, 400
Bst4CI ACNGT 2 cut(s) 483, 904
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 3 cut(s) 111, 150, 972
BstBAI YACGTR 1 cut(s) 741
BstBI TTCGAA 1 cut(s) 1093
BstC8I GCNNGC 3 cut(s) 109, 141, 381
BstDEI CTNAG 4 cut(s) 432, 702, 813, 826
BstF5I GGATG 2 cut(s) 617, 856
BstFNI CGCG 2 cut(s) 141, 379
BstH2I RGCGCY 2 cut(s) 114, 127
BstHHI GCGC 4 cut(s) 113, 126, 141, 143
BstKTI GATC 4 cut(s) 47, 212, 304, 598
BstMAI GTCTC 3 cut(s) 75, 156, 893
BstMBI GATC 4 cut(s) 44, 209, 301, 595
BstMWI GCNNNNNNNGC 3 cut(s) 149, 281, 464
BstNI CCWGG 3 cut(s) 97, 392, 400
BstSCI CCNGG 7 cut(s) 24, 95, 390, 398, 560, 671, 672
BstUI CGCG 2 cut(s) 141, 379
BstV1I GCAGC 4 cut(s) 382, 451, 1001, 1061
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 2 cut(s) 44, 209
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 2 cut(s) 44, 209
BstZ17I GTATAC 1 cut(s) 738
Bsu36I CCTNAGG 1 cut(s) 826
BtsCI GGATG 2 cut(s) 617, 856
BtsIMutI CAGTG 2 cut(s) 459, 1018
Cac8I GCNNGC 3 cut(s) 109, 141, 381
CfoI GCGC 4 cut(s) 113, 126, 141, 143
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 99, 226
Cfr9I CCCGGG 1 cut(s) 672
CseI GACGC 4 cut(s) 45, 158, 168, 961
CviAII CATG 2 cut(s) 223, 332
DdeI CTNAG 4 cut(s) 432, 702, 813, 826
DinI GGCGCC 1 cut(s) 112
DpnI GATC 4 cut(s) 46, 211, 303, 597
DpnII GATC 4 cut(s) 44, 209, 301, 595
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 789
Eco47I GGWCC 2 cut(s) 99, 226
Eco57I CTGAAG 3 cut(s) 306, 447, 519
Eco81I CCTNAGG 1 cut(s) 826
Eco88I CYCGRG 1 cut(s) 672
EcoRII CCWGG 3 cut(s) 95, 390, 398
EcoT14I CCWWGG 1 cut(s) 789
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 2 cut(s) 75, 156
FaeI CATG 2 cut(s) 226, 335
FalI AAGNNNNNCTT 2 cut(s) 941, 973
FaqI GGGAC 1 cut(s) 544
FatI CATG 2 cut(s) 222, 331
FblI GTMKAC 1 cut(s) 737
Fnu4HI GCNGC 6 cut(s) 127, 396, 465, 990, 1017, 1050
FokI GGATG 2 cut(s) 604, 863
Fsp4HI GCNGC 6 cut(s) 127, 396, 465, 990, 1017, 1050
FspBI CTAG 2 cut(s) 441, 470
GlaI GCGC 4 cut(s) 112, 125, 140, 142
GluI GCNGC 6 cut(s) 127, 396, 465, 990, 1017, 1050
HaeII RGCGCY 2 cut(s) 114, 127
HapII CCGG 5 cut(s) 25, 108, 562, 621, 673
HgaI GACGC 4 cut(s) 45, 158, 168, 961
HhaI GCGC 4 cut(s) 113, 126, 141, 143
Hin1I GRCGYC 3 cut(s) 111, 150, 972
Hin1II CATG 2 cut(s) 226, 335
Hin6I GCGC 4 cut(s) 111, 124, 139, 141
HinP1I GCGC 4 cut(s) 111, 124, 139, 141
HinfI GANTC 8 cut(s) 21, 204, 374, 385, 614, 724, 755, 1118
HpaII CCGG 5 cut(s) 25, 108, 562, 621, 673
HphI GGTGA 6 cut(s) 206, 380, 486, 620, 733, 849
Hpy166II GTNNAC 1 cut(s) 738
Hpy188III TCNNGA 4 cut(s) 236, 621, 657, 710
Hpy8I GTNNAC 1 cut(s) 738
Hpy99I CGWCG 7 cut(s) 11, 61, 107, 152, 184, 187, 977
HpyAV CCTTC 2 cut(s) 738, 770
HpyCH4III ACNGT 2 cut(s) 483, 904
HpyCH4IV ACGT 2 cut(s) 568, 740
HpyCH4V TGCA 3 cut(s) 467, 989, 1049
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 281, 464
HpyF3I CTNAG 4 cut(s) 432, 702, 813, 826
HpySE526I ACGT 2 cut(s) 568, 740
Hsp92I GRCGYC 3 cut(s) 111, 150, 972
Hsp92II CATG 2 cut(s) 226, 335
HspAI GCGC 4 cut(s) 111, 124, 139, 141
KasI GGCGCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 620
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 4 cut(s) 44, 209, 301, 595
Lsp1109I GCAGC 4 cut(s) 382, 451, 1001, 1061
LweI GCATC 2 cut(s) 412, 841
MaeI CTAG 2 cut(s) 441, 470
MaeII ACGT 2 cut(s) 568, 740
MaeIII GTNAC 2 cut(s) 322, 877
MalI GATC 4 cut(s) 46, 211, 303, 597
MboI GATC 4 cut(s) 44, 209, 301, 595
MflI RGATCY 2 cut(s) 44, 209
MluCI AATT 2 cut(s) 197, 541
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 2 cut(s) 15, 1127
MmeI TCCRAC 2 cut(s) 100, 1064
MreI CGCCGGCG 1 cut(s) 107
MroI TCCGGA 1 cut(s) 620
MroNI GCCGGC 1 cut(s) 107
MseI TTAA 5 cut(s) 474, 662, 959, 1058, 1126
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 5 cut(s) 25, 108, 562, 621, 673
MspR9I CCNGG 7 cut(s) 26, 97, 392, 400, 562, 673, 674
MvaI CCWGG 3 cut(s) 97, 392, 400
MvnI CGCG 2 cut(s) 141, 379
MwoI GCNNNNNNNGC 3 cut(s) 149, 281, 464
NaeI GCCGGC 1 cut(s) 109
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 4 cut(s) 26, 562, 673, 674
NdeII GATC 4 cut(s) 44, 209, 301, 595
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 2 cut(s) 226, 335
NlaIV GGNNCC 4 cut(s) 46, 112, 228, 708
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 877
NspV TTCGAA 1 cut(s) 1093
PalAI GGCGCGCC 1 cut(s) 139
PauI GCGCGC 1 cut(s) 139
PcsI WCGNNNNNNNCGW 4 cut(s) 65, 111, 176, 1090
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 6 cut(s) 204, 374, 385, 614, 724, 755
PfoI TCCNGGA 1 cut(s) 560
PkrI GCNGC 6 cut(s) 128, 397, 466, 991, 1018, 1051
PleI GAGTC 2 cut(s) 15, 1126
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 2 cut(s) 15, 1126
Ppu21I YACGTR 1 cut(s) 741
Psp6I CCWGG 3 cut(s) 95, 390, 398
PspGI CCWGG 3 cut(s) 95, 390, 398
PspN4I GGNNCC 4 cut(s) 46, 112, 228, 708
PspPI GGNCC 2 cut(s) 99, 226
PsuI RGATCY 2 cut(s) 44, 209
PteI GCGCGC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 5 cut(s) 474, 662, 959, 1058, 1126
SatI GCNGC 6 cut(s) 127, 396, 465, 990, 1017, 1050
Sau3AI GATC 4 cut(s) 44, 209, 301, 595
Sau96I GGNCC 2 cut(s) 99, 226
SchI GAGTC 2 cut(s) 15, 1127
ScrFI CCNGG 7 cut(s) 26, 97, 392, 400, 562, 673, 674
SfaNI GCATC 2 cut(s) 412, 841
SfoI GGCGCC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 1093
SgrAI CRCCGGYG 1 cut(s) 107
SgsI GGCGCGCC 1 cut(s) 139
SinI GGWCC 2 cut(s) 99, 226
SmaI CCCGGG 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 2 cut(s) 197, 541
SsiI CCGC 5 cut(s) 29, 83, 127, 507, 1016
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 2 cut(s) 441, 470
StyD4I CCNGG 7 cut(s) 24, 95, 390, 398, 560, 671, 672
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 2 cut(s) 483, 904
TaiI ACGT 2 cut(s) 571, 743
TaqI TCGA 4 cut(s) 120, 243, 906, 1093
TaqII GACCGA 1 cut(s) 174
TasI AATT 2 cut(s) 197, 541
TauI GCSGC 2 cut(s) 129, 1019
TfiI GAWTC 6 cut(s) 204, 374, 385, 614, 724, 755
Tru1I TTAA 5 cut(s) 474, 662, 959, 1058, 1126
Tru9I TTAA 5 cut(s) 474, 662, 959, 1058, 1126
TscAI CASTG 2 cut(s) 459, 1018
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 4 cut(s) 395, 464, 989, 1049
Tsp45I GTSAC 1 cut(s) 877
TspDTI ATGAA 4 cut(s) 273, 669, 789, 1020
TspGWI ACGGA 1 cut(s) 91
TspMI CCCGGG 1 cut(s) 672
TspRI CASTG 2 cut(s) 459, 1018
VpaK11BI GGWCC 2 cut(s) 99, 226
XapI RAATTY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XmaI CCCGGG 1 cut(s) 672
XmiI GTMKAC 1 cut(s) 737
XspI CTAG 2 cut(s) 441, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.