Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0005657

Physical Location & Seq

Genomic Coordinates Forward (+)

22007557 .. 22009018

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTTCTTGGGTTTAACCAGTGGCTGATCTCGAACCGTAATTTCGAGCACACCGACGTGACCCTATCGTATTTGGTGGATTACTTTGGCAGGAGGAAGGATTTCAAGGTGACCCACGATGTGATTGTGAGTTCAGGTGGAGTTGCTGGGGCGAAAACTTTTGCTTCCGCCATTGATAGGCTGGTGAGAGCTGGGAGGCCTGCTCAAGCTGTTTCTTTCTTTGAGAAGATGGAGAAGGATTATGGGCTGAAGCGCGAAAAAGATTCGCTGAAATTGGTTATCGAAAATCTCTGCGAAAACGGGTTTGCGAGCAATGCTGAGAAAATGGTGAAGGGTTTGGCCAATGAGTTTTTCCCTGATGGGTATATGTGTGATTTGCTGATCAAGGGTTGGTGTGTTGATGGGAAGCTTGAGGAAGCGAGGAAATTGGCTGGGGAGATGTACAGAGGAGGGTTTGAGATTGGTACTACCGCTTACAATGCGATTCTCGATTGTGTTTCGAAGCTTTGTAGGAAGAAGGACCCGTTTCGCCTGCATTCGGAGGTGGAGGAAATCTTGGTGGATATGGACACTCATGGGGTTCCAAGAAATGTGGAGACTTCCAATGTTTTGATTAGTAATTTGTGTAAAATTAGGAGGACAGAGGATGCTCTGAACCTGTATGAGAGAATGGGTGAGTGGGGGTGTTACCCGAATGAGACTACGTTTCTTGTGTTGATCAGGAGCTTGTATCAGGCAGCAAGGATTGGGGAGGGAGATGAAATGATTGATAAGATGAAGTCTACCGGATTCGGTGAAGCTCTTAATAAGAAGGAATATTATGGATTCTTGAAGATTTTGTGTGGCATTGAGAGGATCGATCACTCATTGCGTGTTTTCAAGAAGATGAAGGACGATAAATGTGAGCCCGGAATCAAGACTTATGAGCTGTTGATGGGGAAACTGTATGCTCGCAACCGTGTCGATAGAGCCACTGCCCTGTTCAATGAGGCTCAAAAGAGAGGGGTGCCTTTGACACAGAAGGCGTATCCAGTGGACCCGTATTTCTTGAAGAAGAAGGAGCTAAAGACTGCGAAGAAGGGTGTGAAGAATGAGAAGAAGCGGGAAACGTTCCCTGAGAAGATGGCAAGGAAGAAGAGACGGTTGAACGTCGAGCCTACTGATGAGACGTCATTAGAAGTCGGAGTTGTCAAATTATCAAAGGGGAATGACAGTTCTGATCAAAGCTTCTGTTTTCCGTATTGTTGTTTTGATCTTATAGTTGGTGAAACTAGAAATAAACCAGACTTTGATTCATTTGATTCTTCAGTCTGTGCGACGTGCTTTCAAATATGGTCATCTGTTTATGCGAAATTTTGTGTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

456

Amino Acids

51.92

Weight (kDa)

8.77

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	197 - 243	1.8e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60960
fragaria_vesca	FvH4_5g29994 FvH4_5g29994 FvH4_5g29994 FvH4_7g15150
malus_domestica	MD06G1203500.v1.1 MD14G1214300.v1.1
prunus_persica	Prupe.5G207600_v2.0.a1
pyrus_communis	pycom06g18160 pycom14g17770 pycom16g18740
rosa_chinensis	RchiOBHm_Chr7g0224161 RchiOBHm_Chr7g0224171
rosa_laevigata	RLG00000001915
rosa_multiflora	Rmu_co8487915.1_g000001 Rmu_sc0008008.1_g000001 Rmu_sc0023501.1_g000005
rosa_roxburghii	Rroxscaffold_3G00235130 Rroxscaffold_3G00235140 Rroxscaffold_3G00235150
rosa_rugosa	Rorug07G0199800 Rorug07G0221500
rosa_samantha	Rh7AG365400 Rh7BG357100 Rh7CG384300 Rh7DG360200
rosa_wichuraiana	Rw7G030930 Rw7G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1172
AccB1I	GGYRCC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	782
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	168, 471, 1102
AclI	AACGTT	1 cut(s)	1109
AclWI	GGATC	1 cut(s)	863
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	1352
AcuI	CTGAAG	2 cut(s)	269, 1290
AcyI	GRCGYC	1 cut(s)	1169
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	443, 466
AfiI	CCNNNNNNNGG	2 cut(s)	177, 538
AgsI	TTSAA	7 cut(s)	106, 832, 880, 985, 1051, 1147, 1328
AjiI	CACGTC	2 cut(s)	58, 1320
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	56
AloI	GAACNNNNNNTCC	2 cut(s)	1198, 1230
AluBI	AGCT	9 cut(s)	191, 209, 409, 505, 726, 800, 928, 1063, 1227
AluI	AGCT	9 cut(s)	191, 209, 409, 505, 726, 800, 928, 1063, 1227
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	4 cut(s)	590, 692, 1132, 1160
AlwI	GGATC	1 cut(s)	863
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	2 cut(s)	197, 339
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	1 cut(s)	1352
Asp700I	GAANNNNTTC	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	520, 1036
AsuC2I	CCSGG	1 cut(s)	909
AsuHPI	GGTGA	6 cut(s)	121, 196, 340, 686, 806, 1277
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	520, 1036
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	1006
BanII	GRGCYC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	749
BccI	CCATC	5 cut(s)	223, 353, 395, 928, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	943, 977
BciVI	GTATCC	1 cut(s)	1038
BclI	TGATCA	3 cut(s)	381, 717, 1219
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BfaI	CTAG	1 cut(s)	1272
BfuI	GTATCC	1 cut(s)	1038
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	1 cut(s)	909
Bme18I	GGWCC	2 cut(s)	520, 1036
BmgBI	CACGTC	2 cut(s)	58, 1320
BmgT120I	GGNCC	2 cut(s)	520, 1036
BmiI	GGNNCC	4 cut(s)	522, 582, 1008, 1038
BmrFI	CCNGG	1 cut(s)	909
BmsI	GCATC	1 cut(s)	637
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	189, 431
BpuMI	CCSGG	1 cut(s)	909
Bsa29I	ATCGAT	1 cut(s)	858
BsaHI	GRCGYC	1 cut(s)	1169
BsaWI	WCCGGW	1 cut(s)	785
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 538
Bse1I	ACTGG	2 cut(s)	19, 1031
Bse3DI	GCAATG	2 cut(s)	319, 866
BseCI	ATCGAT	1 cut(s)	858
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	177, 538
BseMI	GCAATG	2 cut(s)	319, 866
BseMII	CTCAG	2 cut(s)	309, 1107
BseNI	ACTGG	2 cut(s)	19, 1031
BseRI	GAGGAG	1 cut(s)	462
BseXI	GCAGC	1 cut(s)	749
BseYI	CCCAGC	3 cut(s)	146, 191, 431
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	199, 341
BshNI	GGYRCC	1 cut(s)	1006
BshVI	ATCGAT	1 cut(s)	858
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	786, 909
BslI	CCNNNNNNNGG	2 cut(s)	177, 538
BsmAI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BsmBI	CGTCTC	2 cut(s)	1132, 1160
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	199, 341
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	2 cut(s)	51, 909
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BspACI	CCGC	3 cut(s)	168, 471, 1102
BspANI	GGCC	2 cut(s)	199, 341
BspCNI	CTCAG	2 cut(s)	310, 1108
BspDI	ATCGAT	1 cut(s)	858
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	522, 582, 1008, 1038
BspPI	GGATC	1 cut(s)	863
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	1006
BsrDI	GCAATG	2 cut(s)	319, 866
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	19, 1031
BssMI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BssNI	GRCGYC	1 cut(s)	1169
Bst4CI	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
Bst6I	CTCTTC	1 cut(s)	1130
BstACI	GRCGYC	1 cut(s)	1169
BstAUI	TGTACA	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	4 cut(s)	201, 310, 533, 952
BstDEI	CTNAG	2 cut(s)	318, 1116
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	652
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	7 cut(s)	30, 384, 720, 858, 862, 1222, 1255
BstMAI	GTCTC	4 cut(s)	590, 692, 1132, 1160
BstMBI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 479
BstPI	GGTNACC	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	907
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	749
Bsu15I	ATCGAT	1 cut(s)	858
BsuI	GTATCC	1 cut(s)	1038
BsuRI	GGCC	2 cut(s)	199, 341
BsuTUI	ATCGAT	1 cut(s)	858
BtrI	CACGTC	2 cut(s)	58, 1320
BtsCI	GGATG	1 cut(s)	652
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	3 cut(s)	26, 972, 1038
Cac8I	GCNNGC	4 cut(s)	201, 310, 533, 952
CaiI	CAGNNNCTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	520, 1036
ClaI	ATCGAT	1 cut(s)	858
Csp6I	GTAC	2 cut(s)	442, 465
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	1 cut(s)	575
CviQI	GTAC	2 cut(s)	442, 465
DdeI	CTNAG	2 cut(s)	318, 1116
DpnI	GATC	7 cut(s)	29, 383, 719, 857, 861, 1221, 1254
DpnII	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	1 cut(s)	1130
EarI	CTCTTC	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	909
Eco47I	GGWCC	2 cut(s)	520, 1036
Eco57I	CTGAAG	2 cut(s)	269, 1290
Eco91I	GGTNACC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	520
EcoO65I	GGTNACC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	909
Esp3I	CGTCTC	2 cut(s)	1132, 1160
FaeI	CATG	1 cut(s)	578
FatI	CATG	1 cut(s)	574
FauI	CCCGC	1 cut(s)	1095
FbaI	TGATCA	3 cut(s)	381, 717, 1219
FblI	GTMKAC	1 cut(s)	782
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	1 cut(s)	1272
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	738
GsaI	CCCAGC	3 cut(s)	150, 195, 435
HaeIII	GGCC	2 cut(s)	199, 341
HapII	CCGG	2 cut(s)	786, 909
HhaI	GCGC	1 cut(s)	255
Hin1I	GRCGYC	1 cut(s)	1169
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	3 cut(s)	407, 503, 1225
HinfI	GANTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
HpaII	CCGG	2 cut(s)	786, 909
HphI	GGTGA	6 cut(s)	121, 196, 340, 686, 806, 1277
Hpy166II	GTNNAC	2 cut(s)	783, 1036
Hpy188I	TCNGA	4 cut(s)	541, 654, 1184, 1219
Hpy188III	TCNNGA	7 cut(s)	31, 488, 721, 829, 880, 916, 1048
Hpy8I	GTNNAC	2 cut(s)	783, 1036
Hpy99I	CGWCG	3 cut(s)	59, 1154, 1321
HpyAV	CCTTC	9 cut(s)	91, 229, 325, 511, 805, 883, 1015, 1051, 1072
HpyCH4III	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
HpyCH4IV	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
HpyCH4V	TGCA	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 479
HpyF3I	CTNAG	2 cut(s)	318, 1116
HpySE526I	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
Hsp92I	GRCGYC	1 cut(s)	1169
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	3 cut(s)	381, 717, 1219
Kzo9I	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
LmnI	GCTCC	2 cut(s)	723, 1060
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	1272
MaeII	ACGT	6 cut(s)	57, 704, 1109, 1149, 1169, 1319
MaeIII	GTNAC	3 cut(s)	58, 109, 686
MalI	GATC	7 cut(s)	29, 383, 719, 857, 861, 1221, 1254
MboI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
MhlI	GDGCHC	2 cut(s)	51, 909
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	1162
Mox20I	TGGCCA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	15, 804
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	2 cut(s)	786, 909
MspR9I	CCNGG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	535
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	314, 479
NciI	CCSGG	1 cut(s)	909
NdeII	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	4 cut(s)	522, 582, 1008, 1038
NmuCI	GTSAC	2 cut(s)	58, 109
NspV	TTCGAA	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	56
PceI	AGGCCT	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
PkrI	GCNGC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	520
PspEI	GGTNACC	1 cut(s)	109
PspFI	CCCAGC	3 cut(s)	146, 191, 431
PspN4I	GGNNCC	4 cut(s)	522, 582, 1008, 1038
PspPI	GGNCC	2 cut(s)	520, 1036
PspPPI	RGGWCCY	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	443, 466
RsaNI	GTAC	2 cut(s)	442, 465
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	15, 804
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	7 cut(s)	27, 381, 717, 855, 859, 1219, 1252
Sau96I	GGNCC	2 cut(s)	520, 1036
ScrFI	CCNGG	1 cut(s)	909
SduI	GDGCHC	2 cut(s)	51, 909
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	2 cut(s)	520, 1036
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	204, 410
SmoI	CTYRAG	2 cut(s)	204, 410
Sse9I	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	3 cut(s)	168, 471, 1102
SspI	AATATT	1 cut(s)	818
SspMI	CTAG	1 cut(s)	1272
StuI	AGGCCT	1 cut(s)	199
StyD4I	CCNGG	1 cut(s)	907
TaaI	ACNGT	5 cut(s)	38, 945, 959, 1143, 1214
TaiI	ACGT	6 cut(s)	60, 707, 1112, 1152, 1172, 1322
TaqI	TCGA	9 cut(s)	32, 45, 282, 489, 500, 858, 963, 1152, 1363
TasI	AATT	7 cut(s)	40, 272, 425, 619, 630, 1193, 1352
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	7 cut(s)	263, 484, 789, 825, 912, 1292, 1301
Tru1I	TTAA	2 cut(s)	15, 804
Tru9I	TTAA	2 cut(s)	15, 804
TscAI	CASTG	3 cut(s)	26, 979, 1038
TseFI	GTSAC	2 cut(s)	58, 109
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	2 cut(s)	58, 109
TspDTI	ATGAA	4 cut(s)	774, 791, 902, 1284
TspGWI	ACGGA	1 cut(s)	1227
TspRI	CASTG	3 cut(s)	26, 979, 1038
VpaK11BI	GGWCC	2 cut(s)	520, 1036
XapI	RAATTY	1 cut(s)	1352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	1 cut(s)	1272
ZraI	GACGTC	1 cut(s)	1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.