pycom07g09780

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0005282
Physical Location & Seq
Forward (+)
9182400 .. 9182685
286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09780.1

Sequence Viewer

Length: 192 bp
ATGGAGCCGCCATTTTTGAGGAATGCTGAACTTGGAGTTCCGGTCTTTCATTTCATGTATAAAGGAACACTTAGGGTGCTGCTAGTGCTACTTCATGATTTCCCGGAGTTCCTTTGTGATTATCATTTTACTTTTTGTGTTGTAATCCCTCCAAGCTGCATTCAAATGGGAAATATCATCCTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

64

Amino Acids

7.36

Weight (kDa)

5.76

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Not1 PF04054 5 - 61 3.3e-21 CCR4-Not complex component, Not1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 79, 156
AsuC2I CCSGG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 66, 143
BcnI CCSGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 83
BisI GCNGC 3 cut(s) 8, 80, 157
BlsI GCNGC 3 cut(s) 9, 81, 158
Bme1390I CCNGG 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
BseGI GGATG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 66, 143
BsiSI CCGG 2 cut(s) 41, 104
BsmI GAATGC 2 cut(s) 28, 159
BspACI CCGC 1 cut(s) 8
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 66, 143
BtsCI GGATG 1 cut(s) 177
CciI TCATGA 1 cut(s) 94
CviAII CATG 3 cut(s) 55, 95, 184
CviJI RGCY 2 cut(s) 7, 156
CviKI_1 RGCY 2 cut(s) 7, 156
DdeI CTNAG 1 cut(s) 71
FaeI CATG 3 cut(s) 58, 98, 187
FaiI YATR 4 cut(s) 56, 60, 96, 185
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FatI CATG 3 cut(s) 54, 94, 183
Fnu4HI GCNGC 3 cut(s) 8, 80, 157
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 8, 80, 157
FspBI CTAG 1 cut(s) 83
GluI GCNGC 3 cut(s) 8, 80, 157
HapII CCGG 2 cut(s) 41, 104
Hin1II CATG 3 cut(s) 58, 98, 187
HpaII CCGG 2 cut(s) 41, 104
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 3 cut(s) 58, 98, 187
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 54, 117
Lsp1109I GCAGC 2 cut(s) 66, 143
MaeI CTAG 1 cut(s) 83
MnlI CCTC 3 cut(s) 12, 159, 191
MslI CAYNNNNRTG 2 cut(s) 164, 182
MspI CCGG 2 cut(s) 41, 104
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 2 cut(s) 28, 159
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 104
NlaIII CATG 3 cut(s) 58, 98, 187
NlaIV GGNNCC 1 cut(s) 6
PagI TCATGA 1 cut(s) 94
PctI GAATGC 2 cut(s) 28, 159
PfoI TCCNGGA 1 cut(s) 102
PkrI GCNGC 3 cut(s) 9, 81, 158
PspN4I GGNNCC 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 164, 182
SatI GCNGC 3 cut(s) 8, 80, 157
ScrFI CCNGG 1 cut(s) 104
SetI ASST 1 cut(s) 158
SgeI CNNG 8 cut(s) 44, 53, 67, 95, 107, 115, 116, 165
SmiMI CAYNNNNRTG 2 cut(s) 164, 182
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 102
TauI GCSGC 1 cut(s) 10
TseI GCWGC 2 cut(s) 79, 156
TspDTI ATGAA 3 cut(s) 38, 43, 83
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.