Rorug01G0197300

CCR4-NOT transcription complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
27648009 .. 27649961
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0197300.1

Sequence Viewer

Length: 1749 bp
ATGGGTAATAACCTTACAGGAGCTTTACCCGAAGTTCTGTTGGCTGACTACTGCACTTCTAGGACTCCACTACCTAAACTGCAGTCCTTGCAGTTGGCACACAATCAGTTGGTTGGCAAACTGCCAGAATGGTTGGGTCAACTTGAGAATCTTGTTGAACTAAGTCTATCCAGTAACTCACTCTATGGTCCCATCCCGGATTCATTAGGATCATACAATAAACTAAATGGAACTGTCCCAGATAGTTTAGGAAAACTGTCCCAGTTGTCTGTCTTTGACGTATCTTTCAATCAGTTGACAGGTATAGTAACCGAAGCACACTTTTCGGAGCTCAGTAAGTTAAAAATCTTACTTCTGTCTTCCAATTCCTTGGTATTAAATGTCAGTTCAAACTGGATGCCTCCTTTTCAGATACGGAATCTTGATTTGGGCTCATGCCATTTGGGTCCTTCATTTCCTTCCTGGTTGAGATCACAAAAGGAGGTCCGGTATCTTGATTTCTCAGAATCTAGCATTTCAGGTTCCATTCCCAACTGGTTTTGGGAAGTTTCATCTAACCTCTCGCTGTTAAATATTTCATTTAACCAGTTAGAAGGTCAACTCCCAAATCCATTAAACATTGCTCCTTATGCAGACATTGATTTCAGCTCCAACTTATTCCAAGGACCACTTCCTCTTCCAGTTGTTAATGTTGAGTTACTAGATTTATCCAACAATACATTTTCAGGTCCTATCCCGAACAACATTGGTGAAATCACACCAAGCTTGATATTCATGTCTCTTTCAGGAAACCAACTTATGGGAGAAATCCCTGCTTCTATAGGCAAAATGCTGGATCTTGGAGCCATTGATCTTTCAAATAATATATTAAGTGGAAGCATTCTGCCTAGTATTGGGAACTTTTCTTTTCTAAAGGTTCTAGACTTTAGTAAGAACAATCTCTCTGGGAGTATTCCCAACTCGTTAGGTCAGTTGAAGCTGCTCCAAACACTGCACCTAAGCGACAACAAACTCTCCGGAGAGTTCCCTCAAGCTTTGCAGAATTTGTCAAGTTTGGAAACACTGGATCTTGGAAATAACAGCCTAACAGGAACTATCCCACTATGGATTGGCGAAAGGGGAATTTATTATGAAGAAAGCTTGGTTCTTAACTGGAAAGGCTCGCCTCAAAAATTTAACAAGTCCCTCTCCCTTGTAAACAGCATAGACCTTTCAGGAAATCAACTGAGTGGAGATCTTCCAGAAGAGATAACTGAACTTTCAGGTTTGGTTGTCCTGAATATATCCAGAAACCATATACGTGGTCACATTCCAGTAAGCATTTCCAAGTTGCAACAGTTGCAATCACTTGATCTTTCTAATAATAGGCTCTCAGGTCCAGTTCCTCAAAGTCTGTCTTCACTATCATTTCTGGGGTATCTGAATATGTCGAACAATGACTTCTCCGGCATGATCCCTTACACAGGTCATACGACAACTTTCGAAGCATCTTCTTTTGCTGGAAATCCAGGTCTTTGTGGTGCTCCTCTCGCTGTAAGGTGTCCAAGTACTGCTCCAGAAAAGACTCCGGGTGGTGATGATGATGATGACAACTTTATTGACAAATGGTTTTATTTGAGTGTTGGATTGGGATTTGCAGCAGGTATTTTGGTGCCATTCTTCATTTTAGCAACGAAAAAGTCCTGGAGTTATGCTTATTTCTGTTTCATAGATGAAGTTTTGGAGAGGATATCATGCTTGAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

582

Amino Acids

63.24

Weight (kDa)

4.76

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 24 - 159 1.6e-07 Leucine-rich repeat region
LRR_14 PF23598 274 - 358 7.2e-08 Leucine-rich repeat region
LRR_14 PF23598 411 - 477 9.8e-07 Leucine-rich repeat region
LRR_8 PF13855 423 - 481 4.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1631
AccB1I GGYRCC 1 cut(s) 1651
AccB7I CCANNNNNTGG 1 cut(s) 799
AccIII TCCGGA 1 cut(s) 1016
AclWI GGATC 4 cut(s) 217, 843, 1074, 1447
AcsI RAATTY 3 cut(s) 1042, 1122, 1172
AfaI GTAC 1 cut(s) 1549
AfiI CCNNNNNNNGG 3 cut(s) 799, 893, 1463
AgsI TTSAA 6 cut(s) 158, 289, 390, 858, 976, 1741
AjnI CCWGG 3 cut(s) 461, 1507, 1682
AjuI GAANNNNNNNTTGG 4 cut(s) 410, 442, 654, 686
AluBI AGCT 7 cut(s) 23, 331, 648, 765, 979, 1034, 1140
AluI AGCT 7 cut(s) 23, 331, 648, 765, 979, 1034, 1140
Alw21I GWGCWC 2 cut(s) 333, 1525
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 4 cut(s) 217, 843, 1074, 1447
Aor13HI TCCGGA 1 cut(s) 1016
ApeKI GCWGC 2 cut(s) 979, 1637
ApoI RAATTY 3 cut(s) 1042, 1122, 1172
AspS9I GGNCC 6 cut(s) 188, 446, 484, 665, 728, 1376
AsuC2I CCSGG 2 cut(s) 197, 1569
AsuHPI GGTGA 2 cut(s) 761, 1586
AsuII TTCGAA 1 cut(s) 1482
AvaII GGWCC 6 cut(s) 188, 446, 484, 665, 728, 1376
BanI GGYRCC 1 cut(s) 1651
BanII GRGCYC 2 cut(s) 333, 434
BbsI GAAGAC 2 cut(s) 351, 1389
Bbv12I GWGCWC 2 cut(s) 333, 1525
BbvI GCAGC 2 cut(s) 966, 1649
BccI CCATC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 306, 340
BciT130I CCWGG 3 cut(s) 463, 1509, 1684
BcnI CCSGG 2 cut(s) 197, 1569
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 5 cut(s) 60, 510, 701, 888, 920
BfmI CTRYAG 2 cut(s) 80, 819
BfuAI ACCTGC 1 cut(s) 1631
BglII AGATCT 1 cut(s) 1234
BisI GCNGC 2 cut(s) 980, 1638
BlsI GCNGC 2 cut(s) 981, 1639
BmcAI AGTACT 1 cut(s) 1549
Bme1390I CCNGG 5 cut(s) 197, 463, 1509, 1569, 1684
Bme18I GGWCC 6 cut(s) 188, 446, 484, 665, 728, 1376
BmgT120I GGNCC 6 cut(s) 188, 446, 484, 665, 728, 1376
BmiI GGNNCC 5 cut(s) 190, 447, 523, 844, 1653
BmrFI CCNGG 5 cut(s) 197, 463, 1509, 1569, 1684
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 387, 1496
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 2 cut(s) 351, 1389
BpmI CTGGAG 2 cut(s) 1539, 1705
Bpu10I CCTNAGC 1 cut(s) 998
Bpu14I TTCGAA 1 cut(s) 1482
BpuEI CTTGAG 2 cut(s) 164, 1014
BpuMI CCSGG 2 cut(s) 197, 1569
BsaAI YACGTR 1 cut(s) 1301
BsaJI CCNNGG 2 cut(s) 369, 661
BsaWI WCCGGW 2 cut(s) 486, 1016
BsaXI ACNNNNNCTCC 4 cut(s) 473, 503, 998, 1028
Bsc4I CCNNNNNNNGG 3 cut(s) 799, 893, 1463
Bse3DI GCAATG 1 cut(s) 618
BseAI TCCGGA 1 cut(s) 1016
BseBI CCWGG 3 cut(s) 463, 1509, 1684
BseDI CCNNGG 2 cut(s) 369, 661
BseGI GGATG 2 cut(s) 192, 402
BseLI CCNNNNNNNGG 3 cut(s) 799, 893, 1463
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 4 cut(s) 346, 516, 1217, 1386
BseRI GAGGAG 1 cut(s) 1515
BseXI GCAGC 2 cut(s) 966, 1649
BsgI GTGCAG 2 cut(s) 37, 977
BshNI GGYRCC 1 cut(s) 1651
BsiHKAI GWGCWC 2 cut(s) 333, 1525
BsiSI CCGG 5 cut(s) 197, 487, 1017, 1446, 1568
BslFI GGGAC 4 cut(s) 174, 221, 244, 1168
BslI CCNNNNNNNGG 3 cut(s) 799, 893, 1463
BsmAI GTCTC 1 cut(s) 783
BsmFI GGGAC 4 cut(s) 174, 221, 244, 1168
BsmI GAATGC 1 cut(s) 879
Bsp119I TTCGAA 1 cut(s) 1482
Bsp1286I GDGCHC 3 cut(s) 333, 434, 1525
Bsp13I TCCGGA 1 cut(s) 1016
Bsp143I GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
BspCNI CTCAG 4 cut(s) 345, 515, 1218, 1385
BspEI TCCGGA 1 cut(s) 1016
BspLI GGNNCC 5 cut(s) 190, 447, 523, 844, 1653
BspMAI CTGCAG 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 1631
BspPI GGATC 4 cut(s) 217, 843, 1074, 1447
BspT104I TTCGAA 1 cut(s) 1482
BspT107I GGYRCC 1 cut(s) 1651
BsrDI GCAATG 1 cut(s) 618
BssECI CCNNGG 2 cut(s) 369, 661
BssMI GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
BssT1I CCWWGG 2 cut(s) 369, 661
Bst2UI CCWGG 3 cut(s) 463, 1509, 1684
Bst4CI ACNGT 3 cut(s) 235, 258, 1338
Bst6I CTCTTC 2 cut(s) 681, 1239
BstAPI GCANNNNNTGC 2 cut(s) 88, 1339
BstBAI YACGTR 1 cut(s) 1301
BstBI TTCGAA 1 cut(s) 1482
BstC8I GCNNGC 1 cut(s) 1163
BstDEI CTNAG 6 cut(s) 161, 332, 502, 998, 1226, 1372
BstENI CCTNNNNNAGG 1 cut(s) 1461
BstF5I GGATG 2 cut(s) 192, 402
BstKTI GATC 8 cut(s) 212, 473, 838, 853, 1069, 1237, 1354, 1455
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
BstMWI GCNNNNNNNGC 4 cut(s) 88, 629, 1339, 1529
BstNI CCWGG 3 cut(s) 463, 1509, 1684
BstSCI CCNGG 5 cut(s) 195, 461, 1507, 1567, 1682
BstSFI CTRYAG 2 cut(s) 80, 819
BstV1I GCAGC 2 cut(s) 966, 1649
BstV2I GAAGAC 2 cut(s) 351, 1389
BstX2I RGATCY 3 cut(s) 835, 1066, 1234
BstXI CCANNNNNNTGG 2 cut(s) 370, 1301
BstYI RGATCY 3 cut(s) 835, 1066, 1234
BtsCI GGATG 2 cut(s) 192, 402
BtsI GCAGTG 1 cut(s) 989
BtsIMutI CAGTG 2 cut(s) 989, 1061
BveI ACCTGC 1 cut(s) 1631
Cac8I GCNNGC 1 cut(s) 1163
Cfr13I GGNCC 6 cut(s) 188, 446, 484, 665, 728, 1376
Csp6I GTAC 1 cut(s) 1548
CviAII CATG 4 cut(s) 435, 775, 1450, 1734
CviQI GTAC 1 cut(s) 1548
DdeI CTNAG 6 cut(s) 161, 332, 502, 998, 1226, 1372
DpnI GATC 8 cut(s) 211, 472, 837, 852, 1068, 1236, 1353, 1454
DpnII GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
Eam1104I CTCTTC 2 cut(s) 681, 1239
EarI CTCTTC 2 cut(s) 681, 1239
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 2 cut(s) 369, 661
Eco24I GRGCYC 2 cut(s) 333, 434
Eco32I GATATC 1 cut(s) 1731
Eco47I GGWCC 6 cut(s) 188, 446, 484, 665, 728, 1376
Eco53kI GAGCTC 1 cut(s) 331
EcoICRI GAGCTC 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 1461
EcoO109I RGGNCCY 2 cut(s) 446, 728
EcoRII CCWGG 3 cut(s) 461, 1507, 1682
EcoRV GATATC 1 cut(s) 1731
EcoT14I CCWWGG 2 cut(s) 369, 661
EcoT38I GRGCYC 2 cut(s) 333, 434
ErhI CCWWGG 2 cut(s) 369, 661
FaeI CATG 4 cut(s) 438, 778, 1453, 1737
FalI AAGNNNNNCTT 4 cut(s) 654, 686, 1381, 1413
FaqI GGGAC 4 cut(s) 174, 221, 244, 1168
FatI CATG 4 cut(s) 434, 774, 1449, 1733
Fnu4HI GCNGC 2 cut(s) 980, 1638
FokI GGATG 2 cut(s) 179, 409
FriOI GRGCYC 2 cut(s) 333, 434
Fsp4HI GCNGC 2 cut(s) 980, 1638
FspBI CTAG 5 cut(s) 60, 510, 701, 888, 920
GluI GCNGC 2 cut(s) 980, 1638
GsuI CTGGAG 2 cut(s) 1539, 1705
HapII CCGG 5 cut(s) 197, 487, 1017, 1446, 1568
Hin1II CATG 4 cut(s) 438, 778, 1453, 1737
HincII GTYRAC 3 cut(s) 140, 297, 599
HindII GTYRAC 3 cut(s) 140, 297, 599
HindIII AAGCTT 3 cut(s) 763, 1032, 1138
HinfI GANTC 6 cut(s) 64, 148, 200, 418, 506, 1564
HpaII CCGG 5 cut(s) 197, 487, 1017, 1446, 1568
HphI GGTGA 2 cut(s) 761, 1586
Hpy166II GTNNAC 4 cut(s) 140, 297, 599, 1198
Hpy188I TCNGA 4 cut(s) 328, 411, 505, 1422
Hpy8I GTNNAC 4 cut(s) 140, 297, 599, 1198
HpyAV CCTTC 3 cut(s) 459, 468, 587
HpyCH4III ACNGT 3 cut(s) 235, 258, 1338
HpyCH4IV ACGT 2 cut(s) 279, 1300
HpyCH4V TGCA 9 cut(s) 54, 82, 91, 632, 994, 1039, 1333, 1342, 1637
HpyF10VI GCNNNNNNNGC 4 cut(s) 88, 629, 1339, 1529
HpyF3I CTNAG 6 cut(s) 161, 332, 502, 998, 1226, 1372
HpySE526I ACGT 2 cut(s) 279, 1300
Hsp92II CATG 4 cut(s) 438, 778, 1453, 1737
Kpn2I TCCGGA 1 cut(s) 1016
Kzo9I GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
LmnI GCTCC 8 cut(s) 20, 328, 628, 653, 842, 987, 1528, 1558
Lsp1109I GCAGC 2 cut(s) 966, 1649
LweI GCATC 2 cut(s) 387, 1496
MaeI CTAG 5 cut(s) 60, 510, 701, 888, 920
MaeII ACGT 2 cut(s) 279, 1300
MaeIII GTNAC 4 cut(s) 173, 307, 696, 1304
MalI GATC 8 cut(s) 211, 472, 837, 852, 1068, 1236, 1353, 1454
MboI GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
MboII GAAGA 8 cut(s) 351, 668, 1145, 1229, 1256, 1389, 1482, 1651
MflI RGATCY 3 cut(s) 835, 1066, 1234
MhlI GDGCHC 3 cut(s) 333, 434, 1525
MluCI AATT 5 cut(s) 364, 1042, 1122, 1172, 1744
MlyI GAGTC 2 cut(s) 58, 1558
MmeI TCCRAC 3 cut(s) 675, 735, 1603
MroI TCCGGA 1 cut(s) 1016
MseI TTAA 9 cut(s) 341, 377, 569, 582, 614, 687, 869, 1149, 1176
MslI CAYNNNNRTG 1 cut(s) 1299
MspI CCGG 5 cut(s) 197, 487, 1017, 1446, 1568
MspR9I CCNGG 5 cut(s) 197, 463, 1509, 1569, 1684
Mva1269I GAATGC 1 cut(s) 879
MvaI CCWGG 3 cut(s) 463, 1509, 1684
MwoI GCNNNNNNNGC 4 cut(s) 88, 629, 1339, 1529
NciI CCSGG 2 cut(s) 197, 1569
NdeII GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
NlaIII CATG 4 cut(s) 438, 778, 1453, 1737
NlaIV GGNNCC 5 cut(s) 190, 447, 523, 844, 1653
NmuCI GTSAC 1 cut(s) 1304
NspV TTCGAA 1 cut(s) 1482
PctI GAATGC 1 cut(s) 879
PfeI GAWTC 4 cut(s) 148, 200, 418, 506
PflMI CCANNNNNTGG 1 cut(s) 799
PfoI TCCNGGA 2 cut(s) 195, 1682
PkrI GCNGC 2 cut(s) 981, 1639
PleI GAGTC 2 cut(s) 58, 1558
PpsI GAGTC 2 cut(s) 58, 1558
Ppu21I YACGTR 1 cut(s) 1301
PpuMI RGGWCCY 2 cut(s) 446, 728
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 2 cut(s) 446, 728
Psp6I CCWGG 3 cut(s) 461, 1507, 1682
PspGI CCWGG 3 cut(s) 461, 1507, 1682
PspN4I GGNNCC 5 cut(s) 190, 447, 523, 844, 1653
PspPI GGNCC 6 cut(s) 188, 446, 484, 665, 728, 1376
PspPPI RGGWCCY 2 cut(s) 446, 728
PstI CTGCAG 1 cut(s) 84
PsuI RGATCY 3 cut(s) 835, 1066, 1234
RsaI GTAC 1 cut(s) 1549
RsaNI GTAC 1 cut(s) 1548
RseI CAYNNNNRTG 1 cut(s) 1299
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 9 cut(s) 341, 377, 569, 582, 614, 687, 869, 1149, 1176
SatI GCNGC 2 cut(s) 980, 1638
Sau3AI GATC 8 cut(s) 209, 470, 835, 850, 1066, 1234, 1351, 1452
Sau96I GGNCC 6 cut(s) 188, 446, 484, 665, 728, 1376
ScaI AGTACT 1 cut(s) 1549
SchI GAGTC 2 cut(s) 58, 1558
ScrFI CCNGG 5 cut(s) 197, 463, 1509, 1569, 1684
SduI GDGCHC 3 cut(s) 333, 434, 1525
SfaNI GCATC 2 cut(s) 387, 1496
SfcI CTRYAG 2 cut(s) 80, 819
SfuI TTCGAA 1 cut(s) 1482
SinI GGWCC 6 cut(s) 188, 446, 484, 665, 728, 1376
SmiMI CAYNNNNRTG 1 cut(s) 1299
SmlI CTYRAG 2 cut(s) 143, 1029
SmoI CTYRAG 2 cut(s) 143, 1029
Sse9I AATT 5 cut(s) 364, 1042, 1122, 1172, 1744
SspI AATATT 1 cut(s) 574
SspMI CTAG 5 cut(s) 60, 510, 701, 888, 920
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 5 cut(s) 195, 461, 1507, 1567, 1682
StyI CCWWGG 2 cut(s) 369, 661
TaaI ACNGT 3 cut(s) 235, 258, 1338
TaiI ACGT 2 cut(s) 282, 1303
TaqI TCGA 2 cut(s) 1430, 1482
TasI AATT 5 cut(s) 364, 1042, 1122, 1172, 1744
TatI WGTACW 1 cut(s) 1547
TfiI GAWTC 4 cut(s) 148, 200, 418, 506
Tru1I TTAA 9 cut(s) 341, 377, 569, 582, 614, 687, 869, 1149, 1176
Tru9I TTAA 9 cut(s) 341, 377, 569, 582, 614, 687, 869, 1149, 1176
TscAI CASTG 2 cut(s) 996, 1068
TseFI GTSAC 1 cut(s) 1304
TseI GCWGC 2 cut(s) 979, 1637
Tsp45I GTSAC 1 cut(s) 1304
TspDTI ATGAA 9 cut(s) 192, 441, 540, 567, 763, 1146, 1651, 1696, 1728
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 996, 1068
Van91I CCANNNNNTGG 1 cut(s) 799
VpaK11BI GGWCC 6 cut(s) 188, 446, 484, 665, 728, 1376
XagI CCTNNNNNAGG 1 cut(s) 1461
XapI RAATTY 3 cut(s) 1042, 1122, 1172
XbaI TCTAGA 1 cut(s) 919
XspI CTAG 5 cut(s) 60, 510, 701, 888, 920
ZrmI AGTACT 1 cut(s) 1549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.