CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02080 AT1G02080 AT1G02080 |
| fragaria_vesca | FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 |
| malus_domestica | MD02G1214300.v1.1 MD07G1112500.v1.1 |
| prunus_persica | Prupe.2G135900_v2.0.a1 Prupe.2G135900_v2.0.a1 |
| pyrus_communis | pycom07g09730 pycom07g09740 pycom07g09780 pycom11g20140 |
| rosa_chinensis | RchiOBHm_Chr1g0348711 |
| rosa_laevigata | RLG00000028628 |
| rosa_multiflora | Rmu_sc0001674.1_g000008 |
| rosa_roxburghii | Rroxscaffold_4G00306720 |
| rosa_rugosa | Rorug01G0197100 Rorug01G0197200 Rorug01G0197300 |
| rosa_samantha | Rh1AG214400 Rh1BG181000 Rh1CG199100 Rh1DG211000 |
| rosa_wichuraiana | Rw1G018170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 2924, 3164, 4670 |
| AarI | CACCTGC | 1 cut(s) | 5479 |
| Acc16I | TGCGCA | 1 cut(s) | 2285 |
| Acc36I | ACCTGC | 4 cut(s) | 1422, 2299, 4451, 5479 |
| Acc65I | GGTACC | 3 cut(s) | 2525, 5514, 6542 |
| AccB1I | GGYRCC | 4 cut(s) | 1811, 2525, 5514, 6542 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 5206 |
| AccBSI | CCGCTC | 3 cut(s) | 199, 4562, 5062 |
| AccI | GTMKAC | 2 cut(s) | 1300, 1677 |
| AccII | CGCG | 1 cut(s) | 5001 |
| AccIII | TCCGGA | 2 cut(s) | 3614, 6220 |
| AclI | AACGTT | 2 cut(s) | 872, 6097 |
| AcoI | YGGCCR | 3 cut(s) | 18, 1231, 6070 |
| AcvI | CACGTG | 1 cut(s) | 3736 |
| AcyI | GRCGYC | 1 cut(s) | 63 |
| AdeI | CACNNNGTG | 3 cut(s) | 2741, 2750, 4247 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1453, 2086, 2400, 2522, 2699, 2801, 4280, 5206, 5488 |
| AflII | CTTAAG | 2 cut(s) | 3247, 5990 |
| AflIII | ACRYGT | 2 cut(s) | 4233, 4363 |
| AgeI | ACCGGT | 1 cut(s) | 5616 |
| AjiI | CACGTC | 1 cut(s) | 4966 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 176, 208 |
| AleI | CACNNNNGTG | 2 cut(s) | 1545, 4968 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 6141, 6147, 6173, 6179 |
| Alw21I | GWGCWC | 8 cut(s) | 606, 2746, 2755, 4975, 5031, 5350, 6982, 7081 |
| Alw26I | GTCTC | 7 cut(s) | 97, 313, 2602, 3911, 6390, 7015, 7060 |
| Alw44I | GTGCAC | 2 cut(s) | 2742, 6978 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 371, 4466, 4699, 5308, 6700 |
| Ama87I | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| Aor13HI | TCCGGA | 2 cut(s) | 3614, 6220 |
| ApaLI | GTGCAC | 2 cut(s) | 2742, 6978 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 7038, 7070 |
| AseI | ATTAAT | 2 cut(s) | 2928, 5361 |
| AsiGI | ACCGGT | 1 cut(s) | 5616 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 294, 4687 |
| Asp718I | GGTACC | 3 cut(s) | 2525, 5514, 6542 |
| AspLEI | GCGC | 4 cut(s) | 886, 2286, 3849, 6729 |
| AspS9I | GGNCC | 9 cut(s) | 505, 2065, 2513, 2702, 3526, 4463, 6084, 6709, 7028 |
| AsuC2I | CCSGG | 2 cut(s) | 972, 6161 |
| AsuHPI | GGTGA | 9 cut(s) | 1973, 2498, 2580, 4577, 4868, 5023, 5221, 5437, 6040 |
| AsuII | TTCGAA | 1 cut(s) | 7002 |
| AvaI | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| AvaII | GGWCC | 7 cut(s) | 2065, 2513, 2702, 3526, 4463, 6709, 7028 |
| BaeGI | GKGCMC | 3 cut(s) | 2746, 4260, 6982 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 6098, 6131 |
| BalI | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| BamHI | GGATCC | 2 cut(s) | 1081, 5917 |
| BanI | GGYRCC | 4 cut(s) | 1811, 2525, 5514, 6542 |
| BanII | GRGCYC | 3 cut(s) | 606, 3256, 5031 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2476, 2508 |
| BbrPI | CACGTG | 1 cut(s) | 3736 |
| BbsI | GAAGAC | 3 cut(s) | 2760, 5442, 6899 |
| Bbv12I | GWGCWC | 8 cut(s) | 606, 2746, 2755, 4975, 5031, 5350, 6982, 7081 |
| BbvCI | CCTCAGC | 1 cut(s) | 6535 |
| BceAI | ACGGC | 1 cut(s) | 1799 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1970, 2004, 6742, 6776 |
| BciVI | GTATCC | 4 cut(s) | 978, 1359, 2181, 5337 |
| BclI | TGATCA | 2 cut(s) | 4057, 6564 |
| BcnI | CCSGG | 2 cut(s) | 972, 6161 |
| BcoDI | GTCTC | 7 cut(s) | 97, 313, 2602, 3911, 6390, 7015, 7060 |
| BfmI | CTRYAG | 7 cut(s) | 1952, 1968, 3858, 4383, 4643, 5300, 5337 |
| BfoI | RGCGCY | 2 cut(s) | 887, 6730 |
| BfrI | CTTAAG | 2 cut(s) | 3247, 5990 |
| BfuAI | ACCTGC | 4 cut(s) | 1422, 2299, 4451, 5479 |
| BfuI | GTATCC | 4 cut(s) | 978, 1359, 2181, 5337 |
| BmcAI | AGTACT | 2 cut(s) | 2407, 4381 |
| Bme18I | GGWCC | 7 cut(s) | 2065, 2513, 2702, 3526, 4463, 6709, 7028 |
| BmeT110I | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| BmgBI | CACGTC | 1 cut(s) | 4966 |
| BmgT120I | GGNCC | 9 cut(s) | 505, 2065, 2513, 2702, 3526, 4463, 6084, 6709, 7028 |
| BmrI | ACTGGG | 2 cut(s) | 2511, 2580 |
| BmuI | ACTGGG | 2 cut(s) | 2511, 2580 |
| BpiI | GAAGAC | 3 cut(s) | 2760, 5442, 6899 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 293, 325, 1028, 1060 |
| BpmI | CTGGAG | 6 cut(s) | 32, 476, 2579, 2739, 2874, 3362 |
| Bpu10I | CCTNAGC | 1 cut(s) | 6535 |
| Bpu14I | TTCGAA | 1 cut(s) | 7002 |
| BpuEI | CTTGAG | 9 cut(s) | 320, 866, 1364, 1703, 3506, 6041, 6443, 6612, 6997 |
| BpuMI | CCSGG | 2 cut(s) | 972, 6161 |
| Bsa29I | ATCGAT | 1 cut(s) | 6334 |
| BsaAI | YACGTR | 2 cut(s) | 3736, 6392 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1941, 2631 |
| BsaHI | GRCGYC | 1 cut(s) | 63 |
| BsaI | GGTCTC | 2 cut(s) | 97, 7060 |
| BsaWI | WCCGGW | 6 cut(s) | 3528, 3614, 5517, 5616, 6220, 6982 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 53, 59, 83, 89, 4372, 4402, 6147, 6177 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1453, 2086, 2400, 2522, 2699, 2801, 4280, 5206, 5488 |
| Bse118I | RCCGGY | 1 cut(s) | 5616 |
| Bse3DI | GCAATG | 7 cut(s) | 348, 587, 634, 2279, 3810, 4989, 5653 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1941, 2631 |
| BseAI | TCCGGA | 2 cut(s) | 3614, 6220 |
| BseCI | ATCGAT | 1 cut(s) | 6334 |
| BseJI | GATNNNNATC | 2 cut(s) | 1941, 2631 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1453, 2086, 2400, 2522, 2699, 2801, 4280, 5206, 5488 |
| BseMI | GCAATG | 7 cut(s) | 348, 587, 634, 2279, 3810, 4989, 5653 |
| BseRI | GAGGAG | 5 cut(s) | 35, 1748, 1919, 2817, 5855 |
| BseSI | GKGCMC | 3 cut(s) | 2746, 4260, 6982 |
| BseYI | CCCAGC | 1 cut(s) | 4578 |
| BsgI | GTGCAG | 1 cut(s) | 778 |
| Bsh1236I | CGCG | 1 cut(s) | 5001 |
| BshNI | GGYRCC | 4 cut(s) | 1811, 2525, 5514, 6542 |
| BshTI | ACCGGT | 1 cut(s) | 5616 |
| BshVI | ATCGAT | 1 cut(s) | 6334 |
| BsiHKAI | GWGCWC | 8 cut(s) | 606, 2746, 2755, 4975, 5031, 5350, 6982, 7081 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| BsiSI | CCGG | 8 cut(s) | 972, 3529, 3615, 5518, 5617, 6161, 6221, 6983 |
| BslFI | GGGAC | 5 cut(s) | 250, 2499, 4249, 5698, 6143 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1453, 2086, 2400, 2522, 2699, 2801, 4280, 5206, 5488 |
| BsmAI | GTCTC | 7 cut(s) | 97, 313, 2602, 3911, 6390, 7015, 7060 |
| BsmFI | GGGAC | 5 cut(s) | 250, 2499, 4249, 5698, 6143 |
| BsmI | GAATGC | 5 cut(s) | 190, 4951, 6148, 6276, 6965 |
| Bso31I | GGTCTC | 2 cut(s) | 97, 7060 |
| BsoBI | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| Bsp119I | TTCGAA | 1 cut(s) | 7002 |
| Bsp13I | TCCGGA | 2 cut(s) | 3614, 6220 |
| Bsp1407I | TGTACA | 2 cut(s) | 4075, 4236 |
| Bsp19I | CCATGG | 3 cut(s) | 2509, 3903, 6899 |
| Bsp68I | TCGCGA | 1 cut(s) | 5001 |
| BspDI | ATCGAT | 1 cut(s) | 6334 |
| BspEI | TCCGGA | 2 cut(s) | 3614, 6220 |
| BspFNI | CGCG | 1 cut(s) | 5001 |
| BspHI | TCATGA | 2 cut(s) | 1009, 3055 |
| BspMAI | CTGCAG | 3 cut(s) | 1956, 4387, 4647 |
| BspMI | ACCTGC | 4 cut(s) | 1422, 2299, 4451, 5479 |
| BspQI | GCTCTTC | 2 cut(s) | 3174, 5052 |
| BspT104I | TTCGAA | 1 cut(s) | 7002 |
| BspT107I | GGYRCC | 4 cut(s) | 1811, 2525, 5514, 6542 |
| BspTI | CTTAAG | 2 cut(s) | 3247, 5990 |
| BspTNI | GGTCTC | 2 cut(s) | 97, 7060 |
| BsrBI | CCGCTC | 3 cut(s) | 199, 4562, 5062 |
| BsrDI | GCAATG | 7 cut(s) | 348, 587, 634, 2279, 3810, 4989, 5653 |
| BsrFI | RCCGGY | 1 cut(s) | 5616 |
| BsrGI | TGTACA | 2 cut(s) | 4075, 4236 |
| BssAI | RCCGGY | 1 cut(s) | 5616 |
| BssNI | GRCGYC | 1 cut(s) | 63 |
| Bst6I | CTCTTC | 4 cut(s) | 3174, 3522, 4190, 5052 |
| BstACI | GRCGYC | 1 cut(s) | 63 |
| BstAFI | CTTAAG | 2 cut(s) | 3247, 5990 |
| BstAPI | GCANNNNNTGC | 6 cut(s) | 1262, 1655, 2750, 5546, 5975, 6508 |
| BstAUI | TGTACA | 2 cut(s) | 4075, 4236 |
| BstBAI | YACGTR | 2 cut(s) | 3736, 6392 |
| BstBI | TTCGAA | 1 cut(s) | 7002 |
| BstDSI | CCRYGG | 3 cut(s) | 2509, 3903, 6899 |
| BstEII | GGTNACC | 2 cut(s) | 1961, 4813 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2799 |
| BstFNI | CGCG | 1 cut(s) | 5001 |
| BstH2I | RGCGCY | 2 cut(s) | 887, 6730 |
| BstHHI | GCGC | 4 cut(s) | 886, 2286, 3849, 6729 |
| BstMAI | GTCTC | 7 cut(s) | 97, 313, 2602, 3911, 6390, 7015, 7060 |
| BstNSI | RCATGY | 8 cut(s) | 521, 1073, 1157, 1256, 4073, 4237, 4367, 4734 |
| BstPI | GGTNACC | 2 cut(s) | 1961, 4813 |
| BstSFI | CTRYAG | 7 cut(s) | 1952, 1968, 3858, 4383, 4643, 5300, 5337 |
| BstSLI | GKGCMC | 3 cut(s) | 2746, 4260, 6982 |
| BstUI | CGCG | 1 cut(s) | 5001 |
| BstV2I | GAAGAC | 3 cut(s) | 2760, 5442, 6899 |
| BstX2I | RGATCY | 9 cut(s) | 420, 1081, 3152, 3265, 4102, 5467, 5852, 5909, 5917 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1808, 3384 |
| BstYI | RGATCY | 9 cut(s) | 420, 1081, 3152, 3265, 4102, 5467, 5852, 5909, 5917 |
| Bsu15I | ATCGAT | 1 cut(s) | 6334 |
| BsuI | GTATCC | 4 cut(s) | 978, 1359, 2181, 5337 |
| BsuTUI | ATCGAT | 1 cut(s) | 6334 |
| BtgI | CCRYGG | 3 cut(s) | 2509, 3903, 6899 |
| BtrI | CACGTC | 1 cut(s) | 4966 |
| BtsI | GCAGTG | 4 cut(s) | 1480, 3856, 4258, 5687 |
| BtuMI | TCGCGA | 1 cut(s) | 5001 |
| BveI | ACCTGC | 4 cut(s) | 1422, 2299, 4451, 5479 |
| CaiI | CAGNNNCTG | 5 cut(s) | 371, 4466, 4699, 5308, 6700 |
| CciI | TCATGA | 2 cut(s) | 1009, 3055 |
| CfoI | GCGC | 4 cut(s) | 886, 2286, 3849, 6729 |
| Cfr10I | RCCGGY | 1 cut(s) | 5616 |
| Cfr13I | GGNCC | 9 cut(s) | 505, 2065, 2513, 2702, 3526, 4463, 6084, 6709, 7028 |
| ClaI | ATCGAT | 1 cut(s) | 6334 |
| CseI | GACGC | 3 cut(s) | 71, 1844, 5264 |
| CsiI | ACCWGGT | 2 cut(s) | 2816, 4279 |
| CspAI | ACCGGT | 1 cut(s) | 5616 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 2803, 2838, 3717, 3752, 7020, 7055 |
| DraIII | CACNNNGTG | 3 cut(s) | 2741, 2750, 4247 |
| EaeI | YGGCCR | 3 cut(s) | 18, 1231, 6070 |
| Eam1104I | CTCTTC | 4 cut(s) | 3174, 3522, 4190, 5052 |
| EarI | CTCTTC | 4 cut(s) | 3174, 3522, 4190, 5052 |
| Ecl136II | GAGCTC | 2 cut(s) | 604, 5029 |
| Eco147I | AGGCCT | 2 cut(s) | 143, 2327 |
| Eco24I | GRGCYC | 3 cut(s) | 606, 3256, 5031 |
| Eco31I | GGTCTC | 2 cut(s) | 97, 7060 |
| Eco32I | GATATC | 3 cut(s) | 1579, 2916, 5737 |
| Eco47I | GGWCC | 7 cut(s) | 2065, 2513, 2702, 3526, 4463, 6709, 7028 |
| Eco53kI | GAGCTC | 2 cut(s) | 604, 5029 |
| Eco72I | CACGTG | 1 cut(s) | 3736 |
| Eco88I | CYCGRG | 3 cut(s) | 2799, 3255, 4259 |
| Eco91I | GGTNACC | 2 cut(s) | 1961, 4813 |
| EcoICRI | GAGCTC | 2 cut(s) | 604, 5029 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2799 |
| EcoO109I | RGGNCCY | 2 cut(s) | 505, 4463 |
| EcoO65I | GGTNACC | 2 cut(s) | 1961, 4813 |
| EcoRI | GAATTC | 3 cut(s) | 294, 454, 4357 |
| EcoRV | GATATC | 3 cut(s) | 1579, 2916, 5737 |
| EcoT22I | ATGCAT | 6 cut(s) | 319, 1267, 2281, 4771, 4951, 5971 |
| EcoT38I | GRGCYC | 3 cut(s) | 606, 3256, 5031 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 282, 314, 1362, 1394, 3980, 4012, 6171, 6203 |
| FaqI | GGGAC | 5 cut(s) | 250, 2499, 4249, 5698, 6143 |
| FauI | CCCGC | 5 cut(s) | 192, 1100, 1515, 4201, 4555 |
| FbaI | TGATCA | 2 cut(s) | 4057, 6564 |
| FblI | GTMKAC | 2 cut(s) | 1300, 1677 |
| FriOI | GRGCYC | 3 cut(s) | 606, 3256, 5031 |
| FspI | TGCGCA | 1 cut(s) | 2285 |
| GlaI | GCGC | 4 cut(s) | 885, 2285, 3848, 6728 |
| GsaI | CCCAGC | 1 cut(s) | 4582 |
| GsuI | CTGGAG | 6 cut(s) | 32, 476, 2579, 2739, 2874, 3362 |
| HaeII | RGCGCY | 2 cut(s) | 887, 6730 |
| HapII | CCGG | 8 cut(s) | 972, 3529, 3615, 5518, 5617, 6161, 6221, 6983 |
| HgaI | GACGC | 3 cut(s) | 71, 1844, 5264 |
| HhaI | GCGC | 4 cut(s) | 886, 2286, 3849, 6729 |
| Hin1I | GRCGYC | 1 cut(s) | 63 |
| Hin6I | GCGC | 4 cut(s) | 884, 2284, 3847, 6727 |
| HinP1I | GCGC | 4 cut(s) | 884, 2284, 3847, 6727 |
| HincII | GTYRAC | 6 cut(s) | 1977, 2049, 2710, 5254, 5890, 6886 |
| HindII | GTYRAC | 6 cut(s) | 1977, 2049, 2710, 5254, 5890, 6886 |
| HindIII | AAGCTT | 7 cut(s) | 1238, 1866, 3221, 4799, 4806, 5012, 5168 |
| HpaI | GTTAAC | 2 cut(s) | 5890, 6886 |
| HpaII | CCGG | 8 cut(s) | 972, 3529, 3615, 5518, 5617, 6161, 6221, 6983 |
| HphI | GGTGA | 9 cut(s) | 1973, 2498, 2580, 4577, 4868, 5023, 5221, 5437, 6040 |
| Hpy99I | CGWCG | 1 cut(s) | 65 |
| HpyCH4IV | ACGT | 8 cut(s) | 872, 3735, 4723, 4965, 6097, 6248, 6391, 6874 |
| HpySE526I | ACGT | 8 cut(s) | 872, 3735, 4723, 4965, 6097, 6248, 6391, 6874 |
| Hsp92I | GRCGYC | 1 cut(s) | 63 |
| HspAI | GCGC | 4 cut(s) | 884, 2284, 3847, 6727 |
| Kpn2I | TCCGGA | 2 cut(s) | 3614, 6220 |
| KpnI | GGTACC | 3 cut(s) | 2529, 5518, 6546 |
| Ksp22I | TGATCA | 2 cut(s) | 4057, 6564 |
| KspAI | GTTAAC | 2 cut(s) | 5890, 6886 |
| LguI | GCTCTTC | 2 cut(s) | 3174, 5052 |
| MabI | ACCWGGT | 2 cut(s) | 2816, 4279 |
| MaeII | ACGT | 8 cut(s) | 872, 3735, 4723, 4965, 6097, 6248, 6391, 6874 |
| MbiI | CCGCTC | 3 cut(s) | 199, 4562, 5062 |
| MfeI | CAATTG | 4 cut(s) | 1543, 2052, 3228, 4155 |
| MflI | RGATCY | 9 cut(s) | 420, 1081, 3152, 3265, 4102, 5467, 5852, 5909, 5917 |
| MlsI | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| MluNI | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| MmeI | TCCRAC | 6 cut(s) | 96, 1825, 1890, 4537, 6118, 6849 |
| Mox20I | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| Mph1103I | ATGCAT | 6 cut(s) | 319, 1267, 2281, 4771, 4951, 5971 |
| MroI | TCCGGA | 2 cut(s) | 3614, 6220 |
| MroXI | GAANNNNTTC | 2 cut(s) | 294, 4687 |
| MscI | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| Msp20I | TGGCCA | 3 cut(s) | 20, 1233, 6072 |
| MspA1I | CMGCKG | 8 cut(s) | 496, 556, 2498, 4021, 4699, 5308, 5575, 6539 |
| MspCI | CTTAAG | 2 cut(s) | 3247, 5990 |
| MspI | CCGG | 8 cut(s) | 972, 3529, 3615, 5518, 5617, 6161, 6221, 6983 |
| MunI | CAATTG | 4 cut(s) | 1543, 2052, 3228, 4155 |
| Mva1269I | GAATGC | 5 cut(s) | 190, 4951, 6148, 6276, 6965 |
| MvnI | CGCG | 1 cut(s) | 5001 |
| NciI | CCSGG | 2 cut(s) | 972, 6161 |
| NcoI | CCATGG | 3 cut(s) | 2509, 3903, 6899 |
| NmeAIII | GCCGAG | 1 cut(s) | 2887 |
| NmuCI | GTSAC | 4 cut(s) | 1773, 1961, 2733, 5809 |
| NruI | TCGCGA | 1 cut(s) | 5001 |
| NsbI | TGCGCA | 1 cut(s) | 2285 |
| NsiI | ATGCAT | 6 cut(s) | 319, 1267, 2281, 4771, 4951, 5971 |
| NspI | RCATGY | 8 cut(s) | 521, 1073, 1157, 1256, 4073, 4237, 4367, 4734 |
| NspV | TTCGAA | 1 cut(s) | 7002 |
| OliI | CACNNNNGTG | 2 cut(s) | 1545, 4968 |
| PaeI | GCATGC | 1 cut(s) | 4734 |
| PaeR7I | CTCGAG | 1 cut(s) | 2799 |
| PagI | TCATGA | 2 cut(s) | 1009, 3055 |
| PaqCI | CACCTGC | 1 cut(s) | 5479 |
| PceI | AGGCCT | 2 cut(s) | 143, 2327 |
| PciI | ACATGT | 2 cut(s) | 4233, 4363 |
| PciSI | GCTCTTC | 2 cut(s) | 3174, 5052 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 69, 2797 |
| PctI | GAATGC | 5 cut(s) | 190, 4951, 6148, 6276, 6965 |
| PdmI | GAANNNNTTC | 2 cut(s) | 294, 4687 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 5206 |
| PfoI | TCCNGGA | 3 cut(s) | 4465, 5473, 6843 |
| PinAI | ACCGGT | 1 cut(s) | 5616 |
| PmaCI | CACGTG | 1 cut(s) | 3736 |
| PmlI | CACGTG | 1 cut(s) | 3736 |
| Ppu21I | YACGTR | 2 cut(s) | 3736, 6392 |
| PpuMI | RGGWCCY | 1 cut(s) | 4463 |
| PscI | ACATGT | 2 cut(s) | 4233, 4363 |
| PshBI | ATTAAT | 2 cut(s) | 2928, 5361 |
| PsiI | TTATAA | 3 cut(s) | 2924, 3164, 4670 |
| Psp124BI | GAGCTC | 2 cut(s) | 606, 5031 |
| Psp1406I | AACGTT | 2 cut(s) | 872, 6097 |
| Psp5II | RGGWCCY | 1 cut(s) | 4463 |
| PspCI | CACGTG | 1 cut(s) | 3736 |
| PspEI | GGTNACC | 2 cut(s) | 1961, 4813 |
| PspFI | CCCAGC | 1 cut(s) | 4578 |
| PspPI | GGNCC | 9 cut(s) | 505, 2065, 2513, 2702, 3526, 4463, 6084, 6709, 7028 |
| PspPPI | RGGWCCY | 1 cut(s) | 4463 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 4059, 4091 |
| PstI | CTGCAG | 3 cut(s) | 1956, 4387, 4647 |
| PstNI | CAGNNNCTG | 5 cut(s) | 371, 4466, 4699, 5308, 6700 |
| PsuI | RGATCY | 9 cut(s) | 420, 1081, 3152, 3265, 4102, 5467, 5852, 5909, 5917 |
| PvuII | CAGCTG | 5 cut(s) | 556, 4021, 5308, 5575, 6539 |
| RruI | TCGCGA | 1 cut(s) | 5001 |
| SacI | GAGCTC | 2 cut(s) | 606, 5031 |
| SapI | GCTCTTC | 2 cut(s) | 3174, 5052 |
| Sau96I | GGNCC | 9 cut(s) | 505, 2065, 2513, 2702, 3526, 4463, 6084, 6709, 7028 |
| ScaI | AGTACT | 2 cut(s) | 2407, 4381 |
| SexAI | ACCWGGT | 2 cut(s) | 2816, 4279 |
| SfcI | CTRYAG | 7 cut(s) | 1952, 1968, 3858, 4383, 4643, 5300, 5337 |
| Sfr274I | CTCGAG | 1 cut(s) | 2799 |
| SfuI | TTCGAA | 1 cut(s) | 7002 |
| SinI | GGWCC | 7 cut(s) | 2065, 2513, 2702, 3526, 4463, 6709, 7028 |
| SlaI | CTCGAG | 1 cut(s) | 2799 |
| SphI | GCATGC | 1 cut(s) | 4734 |
| SseBI | AGGCCT | 2 cut(s) | 143, 2327 |
| SspI | AATATT | 7 cut(s) | 934, 1572, 1825, 2839, 2935, 3724, 3927 |
| SstI | GAGCTC | 2 cut(s) | 606, 5031 |
| StuI | AGGCCT | 2 cut(s) | 143, 2327 |
| TaiI | ACGT | 8 cut(s) | 875, 3738, 4726, 4968, 6100, 6251, 6394, 6877 |
| TatI | WGTACW | 7 cut(s) | 1291, 2405, 4075, 4236, 4379, 5124, 6807 |
| TauI | GCSGC | 5 cut(s) | 2198, 2645, 4330, 4699, 7026 |
| TseFI | GTSAC | 4 cut(s) | 1773, 1961, 2733, 5809 |
| Tsp45I | GTSAC | 4 cut(s) | 1773, 1961, 2733, 5809 |
| TspGWI | ACGGA | 4 cut(s) | 596, 5340, 5471, 5615 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 5206 |
| Vha464I | CTTAAG | 2 cut(s) | 3247, 5990 |
| VneI | GTGCAC | 2 cut(s) | 2742, 6978 |
| VpaK11BI | GGWCC | 7 cut(s) | 2065, 2513, 2702, 3526, 4463, 6709, 7028 |
| VspI | ATTAAT | 2 cut(s) | 2928, 5361 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2799 |
| XbaI | TCTAGA | 1 cut(s) | 5899 |
| XceI | RCATGY | 8 cut(s) | 521, 1073, 1157, 1256, 4073, 4237, 4367, 4734 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3381 |
| XhoI | CTCGAG | 1 cut(s) | 2799 |
| XmiI | GTMKAC | 2 cut(s) | 1300, 1677 |
| XmnI | GAANNNNTTC | 2 cut(s) | 294, 4687 |
| ZrmI | AGTACT | 2 cut(s) | 2407, 4381 |
| Zsp2I | ATGCAT | 6 cut(s) | 319, 1267, 2281, 4771, 4951, 5971 |