Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005282

Physical Location & Seq

Genomic Coordinates Forward (+)

27645591 .. 27647981

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGCTACAACTAGTCTTTCGTGATTCGAACTCAGAACCTCCCACTTACAAAGGGGAGACTATGCCACTAGACCAAATGGGCTTCGCAACTGTTGATGCAAAATTTGGGATGAAATTGGAAATTCCTTATGGAGTAATAGAGAATGAGGTGAGAGCCACCGACACTTATTTGCTTATGTTCTTTACTTGGATGATTAATTTAAGGATGCCTCCTCTTTCAAATGGTTTTGTCAATAATATTTTTGGTCCACCTGGGTACTCATGGGCACACCTGAAACTTGAGATTGCTTGTAACAGTGGTGCTCAGTTGATAGGATGCCTAGACACGGAAAGAGAAGCTCTTATTGACTTCAAGAATGGTCTCCAAGATCCTGAAAACCGGCTGTCTTCATGGAAAGGAACCAACTGCTGCCGATGGTGGGGGATAAGCTGTGATAATACAACTGGAGCTATTATTGCAGTTGATCTCCAAAACCCACATCCACTGCATCCATTTGAAGATTCTGCTTCTTCTGGCAGGTACGGATTATTTTGGAACCTTAGTGGTGAAATTAGACCTTCCCTGAAGCTGCTGAAGTCCTTGAAACATTTAGACTTGAGCTTCAATACCTTCAATGGCATTTCAATTCCTAAATTCTTTGGATCCTTGAAAAATTTGCAGTATCTAAACCTGTCGAATGCAGGATTTAGTGGTGCAATTCCAACAAGTTTAGGAAACCTCTCTAGCTTGCAGTATCTTGATTTTGCATCCAACTTTATTTATGGTGATAACCTCGAATGGGCGACTGGTGTTGCCTCTTTGGAATATCTCAATATGAATGGAGTTGATCTTTCAATGGTAGGATCAAACTGGATTCAGAAGCTTAATAAACTATCATCCTTAACTGAGTTGCATCTATCTAATTGTCAGTTAGCTGGATTTATTCCATCTATCTCTATGATCAATTTTACTTCACTTGCTGTAATAGAGCTTGATGGTAACAGCTTCAGTTCAGTAATACCTACTTGGATTGTCAATATGAGCAACCTTGTTACTGTCAGTATTAGCGACTGTGGCTTGTATGGAAGGATTCCACTTGGTTTTGGTGAACTACCAGACAAATTAAGATGGCCAAAGTTAGAAGTTATTGCTCTAGCTTCAAATAAACTACATGGTAAACTTCCTTTTTCCATTGGCAATATCACAACTCTCACCTATTTTGATCTATTTGATAACAAGGTCGAGGGTGGGATTCCAAGCTCCATCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

416

Amino Acids

45.92

Weight (kDa)

5.21

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	108 - 145	1.4e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	189 - 300	4e-08	Leucine-rich repeat region
LRR_8	PF13855	218 - 274	3.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005282)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02080 AT1G02080 AT1G02080
fragaria_vesca	FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770 FvH4_7g10770
malus_domestica	MD02G1214300.v1.1 MD07G1112500.v1.1
prunus_persica	Prupe.2G135900_v2.0.a1 Prupe.2G135900_v2.0.a1
pyrus_communis	pycom07g09730 pycom07g09740 pycom07g09780 pycom11g20140
rosa_chinensis	RchiOBHm_Chr1g0348711
rosa_laevigata	RLG00000028628
rosa_multiflora	Rmu_sc0001674.1_g000008
rosa_roxburghii	Rroxscaffold_4G00306720
rosa_rugosa	Rorug01G0197100 Rorug01G0197200 Rorug01G0197300
rosa_samantha	Rh1AG214400 Rh1BG181000 Rh1CG199100 Rh1DG211000
rosa_wichuraiana	Rw1G018170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	507
AclWI	GGATC	4 cut(s)	362, 636, 649, 850
AcoI	YGGCCR	1 cut(s)	1109
AcsI	RAATTY	4 cut(s)	101, 120, 632, 652
AcuI	CTGAAG	3 cut(s)	584, 593, 970
AfaI	GTAC	2 cut(s)	257, 521
AfiI	CCNNNNNNNGG	3 cut(s)	325, 418, 778
AhlI	ACTAGT	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	50, 365
AlwI	GGATC	4 cut(s)	362, 636, 649, 850
AoxI	GGCC	1 cut(s)	1109
ApeKI	GCWGC	2 cut(s)	408, 568
ApoI	RAATTY	4 cut(s)	101, 120, 632, 652
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	5 cut(s)	160, 557, 776, 1097, 1183
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	1111
BamHI	GGATCC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	395, 555
BccI	CCATC	5 cut(s)	408, 934, 968, 1101, 1250
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	939
BcoDI	GTCTC	2 cut(s)	50, 365
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	5 cut(s)	11, 68, 320, 723, 1133
BfuAI	ACCTGC	1 cut(s)	507
BisI	GCNGC	2 cut(s)	409, 569
BlsI	GCNGC	2 cut(s)	410, 570
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	3 cut(s)	400, 536, 643
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	6 cut(s)	85, 195, 305, 496, 755, 901
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	299, 616
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 418, 778
Bse118I	RCCGGY	1 cut(s)	378
Bse1I	ACTGG	3 cut(s)	448, 790, 854
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	8 cut(s)	114, 195, 210, 320, 478, 487, 746, 875
BseLI	CCNNNNNNNGG	3 cut(s)	325, 418, 778
BseMII	CTCAG	3 cut(s)	45, 317, 876
BseNI	ACTGG	3 cut(s)	448, 790, 854
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	395, 555
BshFI	GGCC	1 cut(s)	1111
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	379
BslI	CCNNNNNNNGG	3 cut(s)	325, 418, 778
BsmAI	GTCTC	2 cut(s)	50, 365
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	1111
Bso31I	GGTCTC	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	268, 304
Bsp143I	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
BspANI	GGCC	1 cut(s)	1111
BspCNI	CTCAG	3 cut(s)	44, 316, 877
BspLI	GGNNCC	3 cut(s)	400, 536, 643
BspMI	ACCTGC	1 cut(s)	507
BspPI	GGATC	4 cut(s)	362, 636, 649, 850
BspT104I	TTCGAA	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	365
BsrFI	RCCGGY	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	448, 790, 854
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	4 cut(s)	91, 296, 1036, 1052
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	728
BstDEI	CTNAG	4 cut(s)	31, 303, 539, 885
BstF5I	GGATG	8 cut(s)	114, 195, 210, 320, 478, 487, 746, 875
BstKTI	GATC	7 cut(s)	370, 466, 644, 829, 845, 942, 1204
BstMAI	GTCTC	2 cut(s)	50, 365
BstMBI	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 1053, 1245
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	2 cut(s)	395, 555
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	367, 641
BstYI	RGATCY	2 cut(s)	367, 641
BsuRI	GGCC	1 cut(s)	1111
BtsCI	GGATG	8 cut(s)	114, 195, 210, 320, 478, 487, 746, 875
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	301, 482
BveI	ACCTGC	1 cut(s)	507
Cac8I	GCNNGC	1 cut(s)	728
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	256, 520
CviAII	CATG	3 cut(s)	261, 390, 1151
CviQI	GTAC	2 cut(s)	256, 520
DdeI	CTNAG	4 cut(s)	31, 303, 539, 885
DpnI	GATC	7 cut(s)	369, 465, 643, 828, 844, 941, 1203
DpnII	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
EaeI	YGGCCR	1 cut(s)	1109
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	3 cut(s)	584, 593, 970
EcoRII	CCWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	264, 393, 1154
FatI	CATG	3 cut(s)	260, 389, 1150
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	2 cut(s)	409, 569
FokI	GGATG	8 cut(s)	121, 202, 217, 327, 465, 474, 733, 862
Fsp4HI	GCNGC	2 cut(s)	409, 569
FspBI	CTAG	5 cut(s)	11, 68, 320, 723, 1133
GluI	GCNGC	2 cut(s)	409, 569
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	1111
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	3 cut(s)	264, 393, 1154
HindIII	AAGCTT	1 cut(s)	860
HinfI	GANTC	5 cut(s)	23, 500, 853, 1069, 1231
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	5 cut(s)	160, 557, 776, 1097, 1183
Hpy166II	GTNNAC	3 cut(s)	248, 1088, 1157
Hpy188I	TCNGA	2 cut(s)	34, 858
Hpy188III	TCNNGA	4 cut(s)	20, 352, 371, 737
Hpy8I	GTNNAC	3 cut(s)	248, 1088, 1157
HpyAV	CCTTC	3 cut(s)	567, 619, 1059
HpyCH4III	ACNGT	4 cut(s)	91, 296, 1036, 1052
HpyCH4V	TGCA	9 cut(s)	98, 458, 487, 658, 680, 695, 730, 746, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 1053, 1245
HpyF3I	CTNAG	4 cut(s)	31, 303, 539, 885
Hsp92II	CATG	3 cut(s)	264, 393, 1154
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
LmnI	GCTCC	2 cut(s)	446, 1244
Lsp1109I	GCAGC	2 cut(s)	395, 555
LweI	GCATC	6 cut(s)	85, 195, 305, 496, 755, 901
MaeI	CTAG	5 cut(s)	11, 68, 320, 723, 1133
MaeIII	GTNAC	3 cut(s)	290, 977, 1030
MalI	GATC	7 cut(s)	369, 465, 643, 828, 844, 941, 1203
MboI	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
MboII	GAAGA	3 cut(s)	378, 501, 509
MflI	RGATCY	2 cut(s)	367, 641
MhlI	GDGCHC	2 cut(s)	268, 304
MlsI	TGGCCA	1 cut(s)	1111
MluNI	TGGCCA	1 cut(s)	1111
MmeI	TCCRAC	2 cut(s)	725, 774
MnlI	CCTC	8 cut(s)	48, 139, 219, 222, 728, 782, 805, 1216
Mox20I	TGGCCA	1 cut(s)	1111
MscI	TGGCCA	1 cut(s)	1111
MseI	TTAA	5 cut(s)	195, 200, 864, 881, 1103
Msp20I	TGGCCA	1 cut(s)	1111
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	3 cut(s)	455, 1053, 1245
NdeII	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
NlaIII	CATG	3 cut(s)	264, 393, 1154
NlaIV	GGNNCC	3 cut(s)	400, 536, 643
NspV	TTCGAA	1 cut(s)	26
PctI	GAATGC	1 cut(s)	682
PfeI	GAWTC	5 cut(s)	23, 500, 853, 1069, 1231
PkrI	GCNGC	2 cut(s)	410, 570
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	400, 536, 643
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	367, 641
RsaI	GTAC	2 cut(s)	257, 521
RsaNI	GTAC	2 cut(s)	256, 520
SaqAI	TTAA	5 cut(s)	195, 200, 864, 881, 1103
SatI	GCNGC	2 cut(s)	409, 569
Sau3AI	GATC	7 cut(s)	367, 463, 641, 826, 842, 939, 1201
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	268, 304
SfaNI	GCATC	6 cut(s)	85, 195, 305, 496, 755, 901
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	278, 595
SmoI	CTYRAG	2 cut(s)	278, 595
SpeI	ACTAGT	1 cut(s)	10
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	5 cut(s)	11, 68, 320, 723, 1133
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	91, 296, 1036, 1052
TaqI	TCGA	4 cut(s)	26, 674, 774, 1221
TfiI	GAWTC	5 cut(s)	23, 500, 853, 1069, 1231
Tru1I	TTAA	5 cut(s)	195, 200, 864, 881, 1103
Tru9I	TTAA	5 cut(s)	195, 200, 864, 881, 1103
TscAI	CASTG	2 cut(s)	301, 489
TseI	GCWGC	2 cut(s)	408, 568
TspDTI	ATGAA	3 cut(s)	125, 378, 830
TspGWI	ACGGA	2 cut(s)	341, 537
TspRI	CASTG	2 cut(s)	301, 489
VpaK11BI	GGWCC	1 cut(s)	245
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	4 cut(s)	101, 120, 632, 652
XspI	CTAG	5 cut(s)	11, 68, 320, 723, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.