Rh1BG181000

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005282
Physical Location & Seq
Forward (+)
28848058 .. 28868379
20322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG181000.1

Sequence Viewer

Length: 7200 bp
ATGCTCAAGTTTTCGCAGACCACTGCGAACCAGATTCGGTTCCTCCTGCAAAGCCTCAGCGACGCCAACTCGGACTCTGTTCACCGAGAGCTTACTCAGTTTATTGAATATGGAGTTGAGGGAAGCGTTTTGCTGCTCCAAACCTGCCTGGATCATCTGAATTATTACAGAACAGATACAAAGAATGTGGCACTGGAACGGGTTCTTGCCTCAATTTTCAAATATCTCATCGACCAACCAAATTTCAGTACTATGTTTTGTGAATCACTAAGAAATACAGAGGTCAATGAAGGAATTGTGGAGAATTTCTCGAGTGTATTGCAACTGTCTGTACCTGAGAAAATTGGCATTGGTCTTGCTTTGTCAGATTCAGAAAACCTAGACACCAGAATATGTGGCAAAAACTTCTGTATGGCTCAGATTGAGAAATTGTGTGAAACTCCTGTTGACAGGATCTCTTCTGAGAAAATTCAGAATATTGTTATGTTCCTTCAGCGGTCTGAGGGTCTTTCCAAGCATGTAGATTCCTTTATGCAGATATTATCTTTACTGCAGCTGAAAGATGATGAAAACTCTTTTGTTTTAAGTCCATTGCTTTCAGATGAGCTTCGTGATGCCAATTTTTTGAGGAACATGGACTTGTTCCGTGAAAGCGGAGAAAATGATTTTGACGCTATTTTAGCAGAAATGGAGAAGGAGATGAGTATGGGAGATATTATGAAGGAATTAGGTTACGGATGCACAGTTGATTCATCTCAGTGCAAAGAGATTTTATCCCTTTTCTTACCCCTCAATGAGATTACTATCTCCAAAATACTTGGCACGATTGCCTGCACCCATGCTGGTCTTGAGGATAATCAGAATACATTTTCAACCTTCCGGTTGGCGCTTGGTTATAGTACTTCATCTGATTTGCCTATGCTAAACACCTGGAACATTGATGTCCTTGTGGATACGATCAATCAACTTGCTCCAGACACCAACTGGATAAGTGTTATTGAAAATTTGGATCACGAGGGGTTCTACATTCCTAATCAGGAGGCATTCTCTTTTTTCATGTCTGTATATCAGCATGTGTGTCAGGAGCCATTCCCCCTACATGCCATCTGTGGGTCTGTTTGGAAGAATACCGAGGGACAGCTATCTTTTCTCAAACATGCTGTTTCATCACCACCTGAAGTATTTAATTTTGCTTACTCTGTTAGGCAGCTGCCCTATACGGATACGGTGAATGGCCACAAGCTACAACTTGGACATGCAAATCATGCATGGTTGTGTCTAGACCTTTTGGATGTACTTTGTCACCTAGCAGAGAGGGGTCATGCTCTTTCTGTTCGATCGATACTTGAGTATCCTCTTCAACACTGTCCTGAAGTCCTGCTTCTTGGGATGGCACACATTAATACTCCATACAACCTGCTGCAATATGAAGTGTCTTTCATTGTTTTCCCCGTGATAGTAAAAAATGTCATGGGTAATGGCATGATTATTCACCTCTGGCATACTAACCCCTCTTTGGTGCTGCGGGGATTTGTGGATGCCTACAATAGCGATCCAGACAGCATGACTAGAATATTGGATATCTGTCAAGAGCTTAAGATTTTGTCGTCCGTCATGGAGATGATTCCTTCTCCCTTTAGTATCAGACTGGCAGCCCTTGCTTTCAGAAAAGAGCTTGTAGAACTCGAGAAGTGGTTGAGTAGTAATTTGAATACATATAAAGATACTTTCTTTGAGGAGTGCCTCAAGTTCCTGAAGGAGATTCAAGCTGGAGGGACCCAAGATTTCTCAACCAGACCTTTCCAACATTCTGGTGCTGTCGCAACTCTCTATGGGGACACTACTGCTACATTCTCAAAGGTTCTTAAAGCTCATGTCGCCCAGATTACTTCTAGCCACCTTACTGAGGAGATGGAAAAACTCTCTCTATCAATTATGGATTCTAATCCAAGGCTGCAGAATGGTGGGCCTACAGAGTCATCAACAGATGGATATGCCGATGACATTGAAGCTGAAGCCAACTCTTACTTCCATCAAATGTTTTCTGGTCAGTTGACTATTGAATCAATGGTCCAAATGCTTGCCCGTTTCAAAGAATCTTCTGTTCAAAGGGAACAATCCATTTTTGAGTGCATGATTGCTAATCTGTTTGAAGAGTACAGATTCTTTCCGAAATATCCTGAAAGACAGCTCAAAATTGCCGCAATTTTATTTGGGTCTGTCATCAAGCAGCAGCTTGTAACTCATCTGACTCTAGGGATTGCTCTGCGTGGTGTTTTAGATGCATTGCGCAAACCTGCAGATTCAAAAATGTTTGTGTTTGGAACAAAGGCTCTGGAGCAGTTTGTGGAGCGTCTGATTGAATGGCCACAGTACTGCAATCACATTCTTCAGATATCCCATTTGCGCAATACTCATTCAGAGCTGGTGGTATTCATTGAACAGGCTCTTGCCAGGATTTCATCCGGTCATTCAGATTCAGATGGAAGTAACCATGCTTCTGCCGTTCATCATCACGGTCCCAGTCAAGTTACCCCAGGAAATGTGGAGTTAAATGGATCAAGCATCTTACAAACTGGGCAGACACTATCTTCTCCGCTCCAGCTCCATCAGAGACATGAAATCTCTTTTGATGATCGTCACAAGTCCTCAACTCCATCTAATGAGGTAAAGCCACTTTTATCTTCTGCGACGCAACCTGCAGTTGTTCCTGTTAGTGACACTCCGAGTATTCAGAAGTTACAAAATACAGTTAGTGCTCCATCAATGTTGTCTTCTGCTTCCCCTGGTTTTGTTCGTCCGTCACGAGGAGCTACCTCTACTAGGTTTGGCTCTGCTTTGAGCATTGAAACATTGGTTGCAGCAGCTGAGAAAAGAGATGCTCCTGTTGAGGCTCCAGCAGAGATTCAGGACAAAGTATTATTTATAGTTAATAATATATCACTTGCTAATATTGAAGTTAAGTCGAAGGAGTTTTCTGAGATACTGAAAGAGCAATACTATCCCTGGTTTGCGCAGTATATGGTTATGAAAAGGGCAAGCATTGAGCCCAATTTTCATGACTTGTACCTGAAATTTCTGGACAAACTTAATTCGAAAGCTTTGAATAAAGAGATTGTTCAAGCCACGTATGAGAACTGCAAGGTGCTTCTAGGGTCTGAGCTTATAAAATCAAGCTCAGAGGAGCGTTCATTGCTAAAAAATTTAGGTAGCTGGCTTGGGAAGCTTACTATCGGAAGGAATCAAGTCTTAAGGGCTCGTGAAATTGATCCCAAATCTTTGATCATAGAGGCATATGAGAAAGGTTTGATGATTGCTGTCATACCTTTTACTTCAAAGATTCTGGAACCATGTCAGAATAGCCTCGCGTATCAACCACCGAATCCCTGGACAATGGGTATTCTTGGATTACTTGCTGAGATCTATTCCATGCCAAACTTGAAGATGAACCTCAAGTTTGATATAGAGGTTCTATTCAAGAATCTGGGAGTGGATTTGAAGGAGATAACACCAACTTCTCTTCTCAAGGATCGCAACAGAGAACTTGAAGGGAATCCAGATTTCTCCAACAAAGATGTTGGAGCATCTCAACCACAGATTGCTGAAGTTAAATCTGGAATTATTTCTCCACTAAACCAAGTTGAGCTACCACTTGACGTTGCTCCATCTAATTCTGGGAGCCATACACATCTGTTATCTCAGTATGCTACCTTGATGGAGGATGACAAGCTTGCTTTGGGGTTATCTGATCAGATCACTTCTGCTCAAGGACTGTTACAAGCTACTCCATCACAGTCCCCATTTTCTGTTAGTCAGCATCCCACAGCAATACCTAACATTGGAACCCACGTAATTATCAACCAGAAGCTCAGTGCCTTGGGGGGCCTGCACGTGCATTTCCAAAGAGTGGTTCCAATTGCTATGGATAGAGCTATCAAAGAAATTGTCTCTGGTATTGTTCAGCGCAGTGTTTCTATAGCTACCCAGACAACTAAGGAGCTTGTTTTAAAGGACTATGCCATGGAATCAGATGACACAAGAATTTTTAATGCAGCGCACTTGATGGTCGCCAGTTTGGCAGGAAGTCTAGCGCATGTCACATGCAAGGAACCCTTGCGCAGTTCAATATTAAGTCAGCTGAGAAATTCTCTTCAGGGATTAAACATCGCAAGTGAACTTCTAGAACAAGCTGTTCAACTTGTAACCAATGATAATCTGGATCTTGGCTGTGCAGTCATTGAGCAGGCTGCTACAGATAAGGCGGTAGCAACAATTGACGGGGAAATAGGTCCGCAGCTTTCAGTAAGAAGAAAGAGAGAAGGTGTTGGTGCAACCTATTTTGATGCAAACATGTATCCACAAGGTTCTATGGGTGTTGTGCCAGAAGCTCTCCGCCCTAAACCTGGTCATTTGTCCCTTTCTCAGCAACGAGTTTATGAGGATTTTGTTCGGCTTCCCTGGCAAAACCAATCTATTCAAAGTTCGCACGTTCTGCCAGTTGCTACCACAGCTTCATCTGGTAGTGCTGGTCTCACTAGCACATATGGTTCAGCATCCGGACAACTTAACACGGGCTACTCACCAGGACCTGGAAGCAAATTTGAAGCTGTTTCTCGTCCATTGGATGAAGCGATGGAATCCAATTCTGCCCTCCATCTTAGTGCTTCATCTATTCATGTTGGGGCGGCTGATGGTATTTCCCAGCATAGTTCTGAAAATGATTCTGTTGTTGGCTCATTTCCTTCTGCTGCTTCTGCCCCTGAGCTGCACTCTGTAGAATCATCTGATGCTGTAAAGGAATCTGGAGTGTCCTCACAGCCACCACCTTCAACTGCTGTAACTGAACGTCTCGGAAGTCTCTCAGAACCTTCCCTCACCACAGGGGCTGCATTGGAAAAATACCAGATTGTTGCACAGAAGTTGGAAGCTCTGGTGACTAACGATGCTAGAGAATCAGAAATTCAGGGAGTCATTGGTGAAGTGCCTGATATTATACTCAGATGTGTTAGTCGAGATGAGGCCGCCTTGGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAATGCTGACTGCAATTCGTGATGTTTGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGGTGATTTATTCTGATGAGGAGCGGAAGTTTAATAAAGAAATTACTGTTGGCCTTATACGCAGTGAACTGCTAAACCTTGCAGAGTACAATGTTCACATGGCAAAACTTATTGATGGTGGCAGGAATAAGCCAGCAACAGAGTTCGCCACTTCCTTGCTCCAAACTTTGGTGACTGAAGAATCTAAAGTTATCTCAGAACTTGAGAGTCTTGTTGATGCAATGGGAAAGGCTGCTGCAAAGCCTGGATCTCCCGAGTCACTGCAGCAGGTGGTTGAAAATGTCAAGAATCCTGGTACTAATGGAGCTGCTCCATCTGGTGTTAATGTTGGGAAGGATGACAAGGCCAGACAATCGAGAGAGAAAAAGGCTTCTGTTCACTCCCCAGTAAGCAGGGAAGAGTTCAGTATTGTAGAGTCTGCGGAACCAGATCCTCCTGGTTTTCGCGAGAAGGTGTCTATGCTGTTTGCTGAGTGGTACCGGATTTGTGAACTTCCTGGTGCAAACGAAAATAGTTGTGCCCATTTAGTCATACAGTTGCACTCAAGTGGCATGCTGAAGGGGGATGATCTTACGGACCGATTTTTCCGACTACTCACAGAGCTTACTGTTGCACATTGTCTATCTTCTGAGGTGATTAATTCAGCCACACTGCAAACTCCTCAACAAGTGCAGAATCTATCCTTCCTTGCCATTGATATTTATGCTAAACTTGTATTTTTAATTCTCAAGATGGAGCAGGGATCAAGTAAACTATTGTCCAAGATTTTGGCAGTTACAGTGAGATTCATTCAAAAGGATGCAGAGGAGAAGAAATCATCTTTCAATGCAAGACCGTATTTTAGATTGTTTGTTAACTGGTTGCTAGACCTCGGGTCTTTGGATCCTGTTATTGATGGTGCTAACTTTCAGATATTGACAGCCTTTGCAAATGCATTTCATGCGTTGCAACCCCTCAAAGTTCCTACATTCAGCTTTGCATGGCTCGAGTTGGTGAGTCATAGGAGTTTCATGCCTAAAATGCTAGCTGGAAATGGTCAGAAGGGTTGGCCCTATATCCAACGTTTGCTGGTTGACTTATTTCAATTCATGGAGCCTTTTTTGAGGAATGCTGAACTAGGAGTTCCGGTTCACTTTCTGTATAAAGGCACCCTTAGAGTGTTACTTGTGCTGCTCCATGATTTCCCCCAGTTCCTTTGTGATTATCACTTCACTTTCTGTGATGTTATTCCCCCAAGTTGCATTCAAATGCGAAATATCATCCTCAGTGCATTTCCCCGTAACATGAGGCTTCCTGACCCATCTACTCCGAACTTAAAGATTGATTTGCTTGCTGAAATCACTCAATCTCCACGTGTTCTTTCTGAGGTTGATGCAGCTCTGAAATTAAAGCAGATGAAGACCGATGTGGATGAGTATCTCAAGACAAGGCAACAAGGTTCTTCATTTTTGACCGAATTGAAGCAAAAATTGCTCCTTTTACCAACCGAAGCTGCCTCAGCTGGTACTCGTTACAATGTACCCCTCATCAATTCCCTTGTACTCTATGTGGGGATGCAGGCTATCCAGCAGCTTCAGGCTAGAACACCTCACGCACAGGCAAATCAAACTGTTCCATTTGTATATTTGGTGGGTGCTGCTTTGGATATCTTCCAGACTCTGATAGTGGACCTAGATACTGAAGGACGCTACCTTTTCCTAAATGCAATTGCAAACCAACTGCGCTATCCGAACACCCATACACATTACTTCTCCTTCATTGTTCTTTACTTGTTCGCGGAGTCAAACCAGCAGGAAATTATCCAGGAGCAAATCACAAGGGTATTGTTGGAACGTCTCATTGTTAATCGCCCTCATCCATGGGGTCTACTGATAACATTCATTGAGCTAATCAAGAATCCGAGGTACAACTTCTGGAACCGGGCTTTCATAAGGTGTGCACCGGAGATTGAAAAACTCTTTGAATCTGTATCGAGGTCTTGTGGCGCAAAGCCTGTGGATGAGAGTATGGTTTCAGGTTGGGTACCTGAGACCGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

2399

Amino Acids

266.23

Weight (kDa)

5.57

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNOT1_HEAT PF16418 482 - 623 2.3e-33 CCR4-NOT transcription complex subunit 1 HEAT repeat
CNOT1_TTP_bind PF16417 658 - 820 2.5e-67 CCR4-NOT transcription complex subunit 1 TTP binding domain
CNOT1_CAF1_bind PF16415 964 - 1181 6e-90 CCR4-NOT transcription complex subunit 1 CAF1-binding domain
DUF3819 PF12842 1299 - 1438 5.5e-48 CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819
ARM_Cnot1 PF25097 1640 - 1816 7.2e-52 Cnot1 ARM repeat
NOT1_connector PF23590 1664 - 1813 2.8e-14 CCR4-NOT transcription complex subunit 1, NOT1_connector
Not1 PF04054 2016 - 2376 6.2e-142 CCR4-Not complex component, Not1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3167
AarI CACCTGC 1 cut(s) 5416
Acc16I TGCGCA 4 cut(s) 2291, 2408, 3015, 4118
Acc36I ACCTGC 5 cut(s) 152, 1425, 2305, 2707, 5416
Acc65I GGTACC 2 cut(s) 5634, 7180
AccB1I GGYRCC 3 cut(s) 5634, 6305, 7180
AccB7I CCANNNNNTGG 3 cut(s) 3907, 4589, 5326
AccBSI CCGCTC 3 cut(s) 2599, 5182, 7193
AccI GTMKAC 1 cut(s) 7024
AccII CGCG 3 cut(s) 3368, 5604, 6935
AccIII TCCGGA 1 cut(s) 4556
AclI AACGTT 1 cut(s) 6220
AcoI YGGCCR 2 cut(s) 1234, 2366
AcvI CACGTG 2 cut(s) 3892, 6512
AcyI GRCGYC 1 cut(s) 63
AflII CTTAAG 2 cut(s) 1595, 3250
AflIII ACRYGT 2 cut(s) 4350, 6511
AhdI GACNNNNNGTC 1 cut(s) 6031
AhlI ACTAGT 1 cut(s) 5153
AjuI GAANNNNNNNTTGG 6 cut(s) 2012, 2044, 3894, 3926, 5190, 5222
AleI CACNNNNGTG 1 cut(s) 5703
AloI GAACNNNNNNTCC 2 cut(s) 6270, 6302
Alw21I GWGCWC 2 cut(s) 2761, 7099
Alw26I GTCTC 7 cut(s) 2608, 3952, 4535, 4853, 4862, 6998, 7181
Alw44I GTGCAC 1 cut(s) 7095
AlwNI CAGNNNCTG 4 cut(s) 2867, 4589, 4886, 6817
Ama87I CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
Aor13HI TCCGGA 1 cut(s) 4556
AoxI GGCC 8 cut(s) 1234, 1967, 2366, 3883, 5019, 5209, 5502, 6206
ApaLI GTGCAC 1 cut(s) 7095
ArsI GACNNNNNNTTYG 2 cut(s) 3930, 3962
AseI ATTAAT 2 cut(s) 1401, 5796
Asp700I GAANNNNTTC 2 cut(s) 201, 3622
Asp718I GGTACC 2 cut(s) 5634, 7180
AsuC2I CCSGG 1 cut(s) 7079
AsuII TTCGAA 1 cut(s) 3095
AsuNHI GCTAGC 1 cut(s) 6181
AvaI CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
AvaII GGWCC 7 cut(s) 1776, 2071, 2519, 4289, 4586, 5734, 6826
BaeGI GKGCMC 2 cut(s) 5680, 7099
BaeI ACNNNNGTAYC 4 cut(s) 1334, 1334, 1367, 1367
BalI TGGCCA 2 cut(s) 1236, 2368
BamHI GGATCC 1 cut(s) 6040
BanI GGYRCC 3 cut(s) 5634, 6305, 7180
BanII GRGCYC 2 cut(s) 3051, 3259
BarI GAAGNNNNNNTAC 2 cut(s) 2482, 2514
BauI CACGAG 3 cut(s) 1013, 2805, 3258
BbrPI CACGTG 2 cut(s) 3892, 6512
BbsI GAAGAC 2 cut(s) 2766, 6563
Bbv12I GWGCWC 2 cut(s) 2761, 7099
BbvCI CCTCAGC 2 cut(s) 56, 6655
BceAI ACGGC 1 cut(s) 2489
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciVI GTATCC 4 cut(s) 946, 1216, 1362, 4365
BclI TGATCA 2 cut(s) 3282, 3748
BcnI CCSGG 1 cut(s) 7079
BcoDI GTCTC 7 cut(s) 2608, 3952, 4535, 4853, 4862, 6998, 7181
BcuI ACTAGT 1 cut(s) 5153
BfmI CTRYAG 9 cut(s) 551, 1955, 1971, 2298, 2700, 3975, 4251, 4773, 5420
BfoI RGCGCY 1 cut(s) 890
BfrI CTTAAG 2 cut(s) 1595, 3250
BfuAI ACCTGC 5 cut(s) 152, 1425, 2305, 2707, 5416
BfuI GTATCC 4 cut(s) 946, 1216, 1362, 4365
BglI GCCNNNNNGGC 2 cut(s) 4076, 5027
BglII AGATCT 1 cut(s) 3420
BmcAI AGTACT 3 cut(s) 250, 901, 2375
Bme18I GGWCC 7 cut(s) 1776, 2071, 2519, 4289, 4586, 5734, 6826
BmeRI GACNNNNNGTC 1 cut(s) 6031
BmeT110I CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
BmrI ACTGGG 4 cut(s) 2517, 2586, 5537, 6340
BmtI GCTAGC 1 cut(s) 6185
BmuI ACTGGG 4 cut(s) 2517, 2586, 5537, 6340
BpiI GAAGAC 2 cut(s) 2766, 6563
BplI GAGNNNNNCTC 8 cut(s) 293, 325, 1031, 1063, 4132, 4164, 4754, 4786
BpmI CTGGAG 6 cut(s) 957, 1791, 2357, 2585, 2880, 4824
Bpu10I CCTNAGC 3 cut(s) 56, 4761, 6655
Bpu14I TTCGAA 1 cut(s) 3095
BpuMI CCSGG 1 cut(s) 7079
Bsa29I ATCGAT 1 cut(s) 1340
BsaAI YACGTR 4 cut(s) 3129, 3850, 3892, 6512
BsaBI GATNNNNATC 3 cut(s) 803, 1944, 6573
BsaHI GRCGYC 1 cut(s) 63
BsaI GGTCTC 2 cut(s) 4535, 7181
BsaWI WCCGGW 6 cut(s) 879, 2465, 4556, 5637, 6283, 7099
BsaXI ACNNNNNCTCC 6 cut(s) 5171, 5201, 6270, 6300, 6490, 6520
Bse3DI GCAATG 5 cut(s) 590, 2285, 3191, 5109, 5385
Bse8I GATNNNNATC 3 cut(s) 803, 1944, 6573
BseAI TCCGGA 1 cut(s) 4556
BseCI ATCGAT 1 cut(s) 1340
BseJI GATNNNNATC 3 cut(s) 803, 1944, 6573
BseMI GCAATG 5 cut(s) 590, 2285, 3191, 5109, 5385
BseRI GAGGAG 7 cut(s) 1751, 1922, 2823, 3197, 5192, 5808, 5978
BseSI GKGCMC 2 cut(s) 5680, 7099
BseYI CCCAGC 1 cut(s) 4701
BsgI GTGCAG 5 cut(s) 817, 3872, 4251, 4751, 5849
Bsh1236I CGCG 3 cut(s) 3368, 5604, 6935
Bsh1285I CGRYCG 1 cut(s) 1340
BshFI GGCC 8 cut(s) 1236, 1969, 2368, 3885, 5021, 5211, 5504, 6208
BshNI GGYRCC 3 cut(s) 5634, 6305, 7180
BshVI ATCGAT 1 cut(s) 1340
BsiEI CGRYCG 1 cut(s) 1340
BsiHKAI GWGCWC 2 cut(s) 2761, 7099
BsiHKCI CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
BsiSI CCGG 7 cut(s) 880, 2466, 4557, 5638, 6284, 7078, 7100
BslFI GGGAC 6 cut(s) 1149, 1789, 1850, 2505, 3781, 4399
BsmAI GTCTC 7 cut(s) 2608, 3952, 4535, 4853, 4862, 6998, 7181
BsmBI CGTCTC 2 cut(s) 4853, 6998
BsmFI GGGAC 6 cut(s) 1149, 1789, 1850, 2505, 3781, 4399
BsmI GAATGC 4 cut(s) 1043, 5071, 6271, 6399
BsnI GGCC 8 cut(s) 1236, 1969, 2368, 3885, 5021, 5211, 5504, 6208
Bso31I GGTCTC 2 cut(s) 4535, 7181
BsoBI CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
Bsp119I TTCGAA 1 cut(s) 3095
Bsp1286I GDGCHC 5 cut(s) 2761, 3051, 3259, 5680, 7099
Bsp13I TCCGGA 1 cut(s) 4556
Bsp19I CCATGG 2 cut(s) 4020, 7016
Bsp68I TCGCGA 1 cut(s) 5604
BspANI GGCC 8 cut(s) 1236, 1969, 2368, 3885, 5021, 5211, 5504, 6208
BspDI ATCGAT 1 cut(s) 1340
BspEI TCCGGA 1 cut(s) 4556
BspFNI CGCG 3 cut(s) 3368, 5604, 6935
BspHI TCATGA 1 cut(s) 3058
BspMAI CTGCAG 5 cut(s) 555, 1959, 2302, 2704, 5424
BspMI ACCTGC 5 cut(s) 152, 1425, 2305, 2707, 5416
BspOI GCTAGC 1 cut(s) 6185
BspT104I TTCGAA 1 cut(s) 3095
BspT107I GGYRCC 3 cut(s) 5634, 6305, 7180
BspTI CTTAAG 2 cut(s) 1595, 3250
BspTNI GGTCTC 2 cut(s) 4535, 7181
BsrBI CCGCTC 3 cut(s) 2599, 5182, 7193
BsrDI GCAATG 5 cut(s) 590, 2285, 3191, 5109, 5385
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 3 cut(s) 1013, 2805, 3258
BssT1I CCWWGG 5 cut(s) 1949, 3876, 4020, 5025, 7016
Bst2BI CACGAG 3 cut(s) 1013, 2805, 3258
Bst6I CTCTTC 6 cut(s) 463, 1362, 2148, 3525, 4155, 5550
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 2 cut(s) 1595, 3250
BstAPI GCANNNNNTGC 5 cut(s) 1265, 1658, 4492, 6098, 6628
BstBAI YACGTR 4 cut(s) 3129, 3850, 3892, 6512
BstBI TTCGAA 1 cut(s) 3095
BstDSI CCRYGG 2 cut(s) 4020, 7016
BstENI CCTNNNNNAGG 2 cut(s) 1904, 2821
BstFNI CGCG 3 cut(s) 3368, 5604, 6935
BstH2I RGCGCY 1 cut(s) 890
BstMAI GTCTC 7 cut(s) 2608, 3952, 4535, 4853, 4862, 6998, 7181
BstMCI CGRYCG 1 cut(s) 1340
BstNSI RCATGY 9 cut(s) 521, 1076, 1103, 1160, 1259, 4097, 4104, 4354, 5713
BstSFI CTRYAG 9 cut(s) 551, 1955, 1971, 2298, 2700, 3975, 4251, 4773, 5420
BstSLI GKGCMC 2 cut(s) 5680, 7099
BstUI CGCG 3 cut(s) 3368, 5604, 6935
BstV2I GAAGAC 2 cut(s) 2766, 6563
BstX2I RGATCY 6 cut(s) 453, 3420, 4219, 5405, 5587, 6040
BstXI CCANNNNNNTGG 2 cut(s) 1811, 5926
BstYI RGATCY 6 cut(s) 453, 3420, 4219, 5405, 5587, 6040
Bsu15I ATCGAT 1 cut(s) 1340
BsuI GTATCC 4 cut(s) 946, 1216, 1362, 4365
BsuRI GGCC 8 cut(s) 1236, 1969, 2368, 3885, 5021, 5211, 5504, 6208
BsuTUI ATCGAT 1 cut(s) 1340
BtgI CCRYGG 2 cut(s) 4020, 7016
BtgZI GCGATG 2 cut(s) 4150, 4646
BtsI GCAGTG 5 cut(s) 21, 3973, 5227, 5417, 5807
BtuMI TCGCGA 1 cut(s) 5604
BveI ACCTGC 5 cut(s) 152, 1425, 2305, 2707, 5416
CaiI CAGNNNCTG 4 cut(s) 2867, 4589, 4886, 6817
CciI TCATGA 1 cut(s) 3058
ClaI ATCGAT 1 cut(s) 1340
CpoI CGGWCCG 1 cut(s) 5734
CseI GACGC 5 cut(s) 71, 680, 2342, 2701, 6852
CsiI ACCWGGT 1 cut(s) 4402
CspCI CAANNNNNGTGG 4 cut(s) 168, 203, 7134, 7169
CspI CGGWCCG 1 cut(s) 5734
DraI TTTAAA 1 cut(s) 4008
DriI GACNNNNNGTC 1 cut(s) 6031
EaeI YGGCCR 2 cut(s) 1234, 2366
Eam1104I CTCTTC 6 cut(s) 463, 1362, 2148, 3525, 4155, 5550
Eam1105I GACNNNNNGTC 1 cut(s) 6031
EarI CTCTTC 6 cut(s) 463, 1362, 2148, 3525, 4155, 5550
EciI GGCGGA 1 cut(s) 4382
Eco130I CCWWGG 5 cut(s) 1949, 3876, 4020, 5025, 7016
Eco24I GRGCYC 2 cut(s) 3051, 3259
Eco31I GGTCTC 2 cut(s) 4535, 7181
Eco32I GATATC 3 cut(s) 1582, 2397, 6805
Eco47I GGWCC 7 cut(s) 1776, 2071, 2519, 4289, 4586, 5734, 6826
Eco72I CACGTG 2 cut(s) 3892, 6512
Eco88I CYCGRG 5 cut(s) 310, 1685, 5411, 6029, 6143
EcoNI CCTNNNNNAGG 2 cut(s) 1904, 2821
EcoO109I RGGNCCY 3 cut(s) 1776, 3883, 4586
EcoRV GATATC 3 cut(s) 1582, 2397, 6805
EcoT14I CCWWGG 5 cut(s) 1949, 3876, 4020, 5025, 7016
EcoT22I ATGCAT 3 cut(s) 1270, 2287, 6094
EcoT38I GRGCYC 2 cut(s) 3051, 3259
ErhI CCWWGG 5 cut(s) 1949, 3876, 4020, 5025, 7016
Esp3I CGTCTC 2 cut(s) 4853, 6998
FalI AAGNNNNNCTT 8 cut(s) 1365, 1397, 4097, 4129, 5123, 5155, 6294, 6326
FaqI GGGAC 6 cut(s) 1149, 1789, 1850, 2505, 3781, 4399
FauI CCCGC 1 cut(s) 1518
FauNDI CATATG 2 cut(s) 3295, 4543
FbaI TGATCA 2 cut(s) 3282, 3748
FblI GTMKAC 1 cut(s) 7024
FriOI GRGCYC 2 cut(s) 3051, 3259
FspI TGCGCA 4 cut(s) 2291, 2408, 3015, 4118
GsaI CCCAGC 1 cut(s) 4705
GsuI CTGGAG 6 cut(s) 957, 1791, 2357, 2585, 2880, 4824
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 8 cut(s) 1236, 1969, 2368, 3885, 5021, 5211, 5504, 6208
HapII CCGG 7 cut(s) 880, 2466, 4557, 5638, 6284, 7078, 7100
HgaI GACGC 5 cut(s) 71, 680, 2342, 2701, 6852
Hin1I GRCGYC 1 cut(s) 63
HincII GTYRAC 4 cut(s) 448, 2055, 6013, 6232
HindII GTYRAC 4 cut(s) 448, 2055, 6013, 6232
HindIII AAGCTT 4 cut(s) 3099, 3224, 3728, 5132
HpaI GTTAAC 1 cut(s) 6013
HpaII CCGG 7 cut(s) 880, 2466, 4557, 5638, 6284, 7078, 7100
Hpy99I CGWCG 2 cut(s) 65, 2695
HpyCH4IV ACGT 9 cut(s) 3128, 3657, 3849, 3891, 4488, 4846, 6220, 6511, 6991
HpySE526I ACGT 9 cut(s) 3128, 3657, 3849, 3891, 4488, 4846, 6220, 6511, 6991
Hsp92I GRCGYC 1 cut(s) 63
KflI GGGWCCC 1 cut(s) 1776
Kpn2I TCCGGA 1 cut(s) 4556
KpnI GGTACC 2 cut(s) 5638, 7184
Ksp22I TGATCA 2 cut(s) 3282, 3748
KspAI GTTAAC 1 cut(s) 6013
MabI ACCWGGT 1 cut(s) 4402
MaeII ACGT 9 cut(s) 3128, 3657, 3849, 3891, 4488, 4846, 6220, 6511, 6991
MbiI CCGCTC 3 cut(s) 2599, 5182, 7193
MfeI CAATTG 3 cut(s) 3915, 4272, 6864
MflI RGATCY 6 cut(s) 453, 3420, 4219, 5405, 5587, 6040
MhlI GDGCHC 5 cut(s) 2761, 3051, 3259, 5680, 7099
MlsI TGGCCA 2 cut(s) 1236, 2368
MluNI TGGCCA 2 cut(s) 1236, 2368
MmeI TCCRAC 7 cut(s) 1828, 3559, 3591, 4902, 5770, 6241, 6966
Mox20I TGGCCA 2 cut(s) 1236, 2368
Mph1103I ATGCAT 3 cut(s) 1270, 2287, 6094
MroI TCCGGA 1 cut(s) 4556
MroXI GAANNNNTTC 2 cut(s) 201, 3622
MscI TGGCCA 2 cut(s) 1236, 2368
MslI CAYNNNNRTG 7 cut(s) 757, 1273, 1619, 1812, 4659, 5703, 6404
Msp20I TGGCCA 2 cut(s) 1236, 2368
MspA1I CMGCKG 6 cut(s) 496, 556, 1210, 2867, 4138, 6659
MspCI CTTAAG 2 cut(s) 1595, 3250
MspI CCGG 7 cut(s) 880, 2466, 4557, 5638, 6284, 7078, 7100
MunI CAATTG 3 cut(s) 3915, 4272, 6864
Mva1269I GAATGC 4 cut(s) 1043, 5071, 6271, 6399
MvnI CGCG 3 cut(s) 3368, 5604, 6935
NciI CCSGG 1 cut(s) 7079
NcoI CCATGG 2 cut(s) 4020, 7016
NdeI CATATG 2 cut(s) 3295, 4543
NheI GCTAGC 1 cut(s) 6181
NmuCI GTSAC 8 cut(s) 1301, 2639, 2717, 2802, 4096, 4933, 5329, 5415
NruI TCGCGA 1 cut(s) 5604
NsbI TGCGCA 4 cut(s) 2291, 2408, 3015, 4118
NsiI ATGCAT 3 cut(s) 1270, 2287, 6094
NspI RCATGY 9 cut(s) 521, 1076, 1103, 1160, 1259, 4097, 4104, 4354, 5713
NspV TTCGAA 1 cut(s) 3095
OliI CACNNNNGTG 1 cut(s) 5703
PaeI GCATGC 1 cut(s) 5713
PaeR7I CTCGAG 3 cut(s) 310, 1685, 6143
PagI TCATGA 1 cut(s) 3058
PaqCI CACCTGC 1 cut(s) 5416
PciI ACATGT 1 cut(s) 4350
PcsI WCGNNNNNNNCGW 1 cut(s) 2803
PctI GAATGC 4 cut(s) 1043, 5071, 6271, 6399
PdmI GAANNNNTTC 2 cut(s) 201, 3622
PflMI CCANNNNNTGG 3 cut(s) 3907, 4589, 5326
PfoI TCCNGGA 1 cut(s) 6960
Ple19I CGATCG 1 cut(s) 1340
PmaCI CACGTG 2 cut(s) 3892, 6512
PmlI CACGTG 2 cut(s) 3892, 6512
Ppu21I YACGTR 4 cut(s) 3129, 3850, 3892, 6512
PpuMI RGGWCCY 2 cut(s) 1776, 4586
PscI ACATGT 1 cut(s) 4350
PshBI ATTAAT 2 cut(s) 1401, 5796
PsiI TTATAA 1 cut(s) 3167
Psp1406I AACGTT 1 cut(s) 6220
Psp5II RGGWCCY 2 cut(s) 1776, 4586
PspCI CACGTG 2 cut(s) 3892, 6512
PspFI CCCAGC 1 cut(s) 4701
PspPPI RGGWCCY 2 cut(s) 1776, 4586
PspXI VCTCGAGB 1 cut(s) 6143
PstI CTGCAG 5 cut(s) 555, 1959, 2302, 2704, 5424
PstNI CAGNNNCTG 4 cut(s) 2867, 4589, 4886, 6817
PsuI RGATCY 6 cut(s) 453, 3420, 4219, 5405, 5587, 6040
PvuI CGATCG 1 cut(s) 1340
PvuII CAGCTG 5 cut(s) 556, 1210, 2867, 4138, 6659
RruI TCGCGA 1 cut(s) 5604
RseI CAYNNNNRTG 7 cut(s) 757, 1273, 1619, 1812, 4659, 5703, 6404
Rsr2I CGGWCCG 1 cut(s) 5734
RsrII CGGWCCG 1 cut(s) 5734
ScaI AGTACT 3 cut(s) 250, 901, 2375
SduI GDGCHC 5 cut(s) 2761, 3051, 3259, 5680, 7099
SexAI ACCWGGT 1 cut(s) 4402
SfcI CTRYAG 9 cut(s) 551, 1955, 1971, 2298, 2700, 3975, 4251, 4773, 5420
Sfr274I CTCGAG 3 cut(s) 310, 1685, 6143
SfuI TTCGAA 1 cut(s) 3095
SinI GGWCC 7 cut(s) 1776, 2071, 2519, 4289, 4586, 5734, 6826
SlaI CTCGAG 3 cut(s) 310, 1685, 6143
SmiMI CAYNNNNRTG 7 cut(s) 757, 1273, 1619, 1812, 4659, 5703, 6404
SpeI ACTAGT 1 cut(s) 5153
SphI GCATGC 1 cut(s) 5713
SspI AATATT 4 cut(s) 478, 1575, 2953, 4128
StyI CCWWGG 5 cut(s) 1949, 3876, 4020, 5025, 7016
TaiI ACGT 9 cut(s) 3131, 3660, 3852, 3894, 4491, 4849, 6223, 6514, 6994
TaqII GACCGA 3 cut(s) 5751, 6575, 6626
TatI WGTACW 7 cut(s) 248, 899, 1294, 2157, 2373, 5244, 6697
TauI GCSGC 3 cut(s) 2204, 4688, 5024
TseFI GTSAC 8 cut(s) 1301, 2639, 2717, 2802, 4096, 4933, 5329, 5415
Tsp45I GTSAC 8 cut(s) 1301, 2639, 2717, 2802, 4096, 4933, 5329, 5415
TspGWI ACGGA 6 cut(s) 635, 750, 1235, 1600, 2790, 5747
Van91I CCANNNNNTGG 3 cut(s) 3907, 4589, 5326
Vha464I CTTAAG 2 cut(s) 1595, 3250
VneI GTGCAC 1 cut(s) 7095
VpaK11BI GGWCC 7 cut(s) 1776, 2071, 2519, 4289, 4586, 5734, 6826
VspI ATTAAT 2 cut(s) 1401, 5796
XagI CCTNNNNNAGG 2 cut(s) 1904, 2821
XbaI TCTAGA 2 cut(s) 1279, 4180
XceI RCATGY 9 cut(s) 521, 1076, 1103, 1160, 1259, 4097, 4104, 4354, 5713
XcmI CCANNNNNNNNNTGG 4 cut(s) 981, 3384, 4213, 5084
XhoI CTCGAG 3 cut(s) 310, 1685, 6143
XmiI GTMKAC 1 cut(s) 7024
XmnI GAANNNNTTC 2 cut(s) 201, 3622
ZrmI AGTACT 3 cut(s) 250, 901, 2375
Zsp2I ATGCAT 3 cut(s) 1270, 2287, 6094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.