pycom07g12060

Cell division protein FtsY homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0009942
Physical Location & Seq
Reverse (-)
13383096 .. 13384976
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGGCGTCGCCTTTGCCGTCCTCTCACCCTCCTCGTCTCTCACTCCTCTCCAAAACTTCACCGCCTCAGTACCACCGCCTTCTCCTTTCCCCGAGCCGACCCGACCATTTCCGGTTCGAATGCCGGGCGGGGCAGACCGGGTTCTTCACCCGGCTCGGCAGGCTTATCAAGGAGAAGGCCAACAGCGACGTGGAGAACTCTTGCTCTACTGGTACCTCGCCGACACCGATCGAGTCCTCGACGAACTCGAAGAGGTTTCAGGCTCTGCTGGTATCCGATTTCGGGCTGAAAATCACGATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTTGCTGGGAAGCTGAAATCTGGAAGTGAACTTAAGGATGTGTTGAAGAAGAGTGTGCTCGATTTGTTAACTATTAAAGGGAAAACCGAACTTCAACTCGGATACAGGAAACCGGCTGTGGTTATGATTGTTGGCGTTAATGGACGCGGGAAAACATCTCTTGGAAAGCTCGCTTATAGATTGAAGAATGGAGGGGCAAAGGTATTAATGGCTGCAGGGGATACCTTTCGAGCAGCTGCATGTGACCAGCTGGAGATATGGGCCGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAGAGAGAGAAGGCCAAAGCAGCATCAGGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGCAAGAAAGCTGTGACCAAAGTCATGCCTGGTGCTCCTAATGTAAGCTCAGCCGTTGGACACTTTTATCATCTTTCTATAATTCAGTTTGAAAATCTAGGCATGTGA

Protein Analysis

267

Amino Acids

28.9

Weight (kDa)

9.66

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54 PF00448 148 - 214 7.7e-19 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 477
AciI CCGC 4 cut(s) 62, 76, 128, 477
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 71, 214
AfiI CCNNNNNNNGG 1 cut(s) 282
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 4 cut(s) 376, 425, 514, 785
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 721
AluBI AGCT 7 cut(s) 343, 499, 566, 580, 672, 704, 741
AluI AGCT 7 cut(s) 343, 499, 566, 580, 672, 704, 741
Alw21I GWGCWC 2 cut(s) 390, 730
Alw26I GTCTC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 91
AoxI GGCC 3 cut(s) 177, 591, 636
ApeKI GCWGC 4 cut(s) 542, 563, 566, 644
AseI ATTAAT 1 cut(s) 536
Asp718I GGTACC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 591
AsuC2I CCSGG 3 cut(s) 125, 139, 151
AsuHPI GGTGA 3 cut(s) 17, 51, 139
AsuII TTCGAA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 91
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 390, 730
BbvI GCAGC 4 cut(s) 529, 553, 575, 656
BccI CCATC 1 cut(s) 670
BceAI ACGGC 1 cut(s) 731
BciT130I CCWGG 1 cut(s) 723
BciVI GTATCC 3 cut(s) 283, 425, 544
BcnI CCSGG 3 cut(s) 125, 139, 151
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 791
BfmI CTRYAG 1 cut(s) 543
BfrI CTTAAG 1 cut(s) 362
BfuI GTATCC 3 cut(s) 283, 425, 544
BisI GCNGC 4 cut(s) 543, 564, 567, 645
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 4 cut(s) 544, 565, 568, 646
Bme1390I CCNGG 4 cut(s) 125, 139, 151, 723
BmeT110I CYCGRG 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 4 cut(s) 125, 139, 151, 723
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 612
BoxI GACNNNNGTC 1 cut(s) 713
BpmI CTGGAG 1 cut(s) 602
Bpu1102I GCTNAGC 1 cut(s) 742
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 3 cut(s) 125, 139, 151
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 2 cut(s) 214, 607
BseBI CCWGG 1 cut(s) 723
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 80, 615, 756
BseNI ACTGG 2 cut(s) 214, 607
BseRI GAGGAG 2 cut(s) 21, 35
BseXI GCAGC 4 cut(s) 529, 553, 575, 656
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 179, 593, 638
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 2 cut(s) 390, 730
BsiHKCI CYCGRG 1 cut(s) 91
BsiSI CCGG 5 cut(s) 112, 124, 138, 151, 443
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 3 cut(s) 179, 593, 638
BsoBI CYCGRG 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 390, 730
Bsp143I GATC 1 cut(s) 228
Bsp1720I GCTNAGC 1 cut(s) 742
BspACI CCGC 4 cut(s) 62, 76, 128, 477
BspANI GGCC 3 cut(s) 179, 593, 638
BspCNI CTCAG 3 cut(s) 79, 616, 755
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 547
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 442
BsrI ACTGG 2 cut(s) 214, 607
BssAI RCCGGY 1 cut(s) 442
BssMI GATC 1 cut(s) 228
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 723
Bst6I CTCTTC 3 cut(s) 245, 374, 675
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 362
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 161, 501, 694
BstDEI CTNAG 3 cut(s) 66, 624, 742
BstF5I GGATG 1 cut(s) 373
BstFNI CGCG 1 cut(s) 477
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 228
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 160, 644
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 3 cut(s) 573, 696, 799
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 4 cut(s) 123, 137, 149, 721
BstSFI CTRYAG 1 cut(s) 543
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 4 cut(s) 529, 553, 575, 656
BsuI GTATCC 3 cut(s) 283, 425, 544
BsuRI GGCC 3 cut(s) 179, 593, 638
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 3 cut(s) 161, 501, 694
CaiI CAGNNNCTG 1 cut(s) 265
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 591
CseI GACGC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 70, 213
CviAII CATG 4 cut(s) 570, 693, 718, 796
CviQI GTAC 2 cut(s) 70, 213
DdeI CTNAG 3 cut(s) 66, 624, 742
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eam1104I CTCTTC 3 cut(s) 245, 374, 675
EarI CTCTTC 3 cut(s) 245, 374, 675
Eco88I CYCGRG 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 721
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 4 cut(s) 573, 696, 721, 799
FaiI YATR 9 cut(s) 329, 455, 507, 571, 589, 694, 719, 773, 797
FatI CATG 4 cut(s) 569, 692, 717, 795
FauI CCCGC 2 cut(s) 121, 470
Fnu4HI GCNGC 4 cut(s) 543, 564, 567, 645
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 543, 564, 567, 645
FspBI CTAG 1 cut(s) 791
GluI GCNGC 4 cut(s) 543, 564, 567, 645
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 602
HaeIII GGCC 3 cut(s) 179, 593, 638
HapII CCGG 5 cut(s) 112, 124, 138, 151, 443
HgaI GACGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 573, 696, 721, 799
HincII GTYRAC 1 cut(s) 399
HindII GTYRAC 1 cut(s) 399
HinfI GANTC 1 cut(s) 233
HpaI GTTAAC 1 cut(s) 399
HpaII CCGG 5 cut(s) 112, 124, 138, 151, 443
HphI GGTGA 3 cut(s) 17, 51, 139
Hpy166II GTNNAC 2 cut(s) 359, 399
Hpy188I TCNGA 2 cut(s) 277, 431
Hpy188III TCNNGA 2 cut(s) 295, 351
Hpy8I GTNNAC 2 cut(s) 359, 399
Hpy99I CGWCG 3 cut(s) 10, 191, 244
HpyAV CCTTC 3 cut(s) 89, 169, 628
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 545, 569, 658, 692, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 644
HpyF3I CTNAG 3 cut(s) 66, 624, 742
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 573, 696, 721, 799
KpnI GGTACC 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 399
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 4 cut(s) 529, 553, 575, 656
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 791
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 572, 706
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 6 cut(s) 136, 262, 388, 391, 526, 692
MhlI GDGCHC 2 cut(s) 390, 730
MluCI AATT 2 cut(s) 664, 774
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 730
MseI TTAA 6 cut(s) 300, 363, 398, 405, 468, 536
MspA1I CMGCKG 2 cut(s) 566, 580
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 5 cut(s) 112, 124, 138, 151, 443
MspR9I CCNGG 4 cut(s) 125, 139, 151, 723
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 160, 644
NciI CCSGG 3 cut(s) 125, 139, 151
NdeII GATC 1 cut(s) 228
NlaIII CATG 4 cut(s) 573, 696, 721, 799
NlaIV GGNNCC 1 cut(s) 214
NmeAIII GCCGAG 2 cut(s) 135, 619
NmuCI GTSAC 2 cut(s) 572, 706
NspI RCATGY 3 cut(s) 573, 696, 799
NspV TTCGAA 1 cut(s) 117
PaeI GCATGC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 224, 245
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 4 cut(s) 544, 565, 568, 646
Ple19I CGATCG 1 cut(s) 231
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PshAI GACNNNNGTC 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 721
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 591
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 265
PvuI CGATCG 1 cut(s) 231
PvuII CAGCTG 2 cut(s) 566, 580
RsaI GTAC 2 cut(s) 71, 214
RsaNI GTAC 2 cut(s) 70, 213
SaqAI TTAA 6 cut(s) 300, 363, 398, 405, 468, 536
SatI GCNGC 4 cut(s) 543, 564, 567, 645
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 591
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 4 cut(s) 125, 139, 151, 723
SduI GDGCHC 2 cut(s) 390, 730
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 543
SfuI TTCGAA 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 696
Sse9I AATT 2 cut(s) 664, 774
SsiI CCGC 4 cut(s) 62, 76, 128, 477
SspMI CTAG 1 cut(s) 791
StyD4I CCNGG 4 cut(s) 123, 137, 149, 721
TaiI ACGT 1 cut(s) 192
TaqI TCGA 6 cut(s) 117, 231, 239, 248, 390, 559
TasI AATT 2 cut(s) 664, 774
Tru1I TTAA 6 cut(s) 300, 363, 398, 405, 468, 536
Tru9I TTAA 6 cut(s) 300, 363, 398, 405, 468, 536
TseFI GTSAC 2 cut(s) 572, 706
TseI GCWGC 4 cut(s) 542, 563, 566, 644
Tsp45I GTSAC 2 cut(s) 572, 706
Vha464I CTTAAG 1 cut(s) 362
VspI ATTAAT 1 cut(s) 536
XceI RCATGY 3 cut(s) 573, 696, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 1 cut(s) 791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.