Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Forward (+)

14460119 .. 14462120

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCGTTGTACGACGCGGCGTTTGTGAACTCGCAGCTCTCGAAACCGACATCAATCTTTGGGCTCCGTCTCTGGGTCGTCATTGGAATCCTTGTCGGTTCTCTGATAGTCCTGATCCTTTTCCTCCTCTCCCTCTGCCTCACCTCTCGTCATCGCTCCCGGGCCCACAAGGCCAAGGCCAAGGCCAAGCTCGCCGCCGCCGACTTGCCCCCTACTCCAGTCAAATCGAAGGAAATCCAGGAAATCGTCAACGACCTCCACGTCGAGATCGGGAAGCCGGAGCACCGGGTGGTGGTGTATTCGGACCGGGCGTCGAGCGGGGAGAGCAGAGGGACATTGAATAGCGGGTGCGAGACGGCGTCGTTTGGGAGCGGGAATGTGGTGGGGCCGGAGGTGTCGCATCTGGGTTGGGGGAGATGGTACACTCTGAGGGAGCTGGAGGCGGCGACGAATGGGTTGTGTGAGGAGAATGTGATTGGGGAAGGAGGGTATGGGATTGTTTACAGTGGGATTCTCAGTGACGGGACTAAAGTTGCTGTCAAGAACTTGTTGAATAACAGGGGTCAAGCAGAGAAGGAATTTAAAGTGGAGGTGGAAGCAATTGGGCGTGTGAGACACAAAAATCTTGTAAGATTACTTGGATACTGTGTTGAGGGTGCATACAGGATGCTTGTGTATGAGTACGTTGACAATGGCAATCTGGATCAGTGGCTTCATGGGGATGTTGGTGAAGTCAGCCCACTAACATGGGATATCCGTATGAATATTATACTGGGAACAGCAAAAGGGTTGGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTTCATCGAGATGTGAAATCTAGCAACATACTAATTGATCGATCCAGTGGAACCCCAAAGTATCTGATTTTGGGCTTGCTAAGCTCCTGTGCTCTGAGAACAGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

312

Amino Acids

34.01

Weight (kDa)

8.5

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccBSI	CCGCTC	2 cut(s)	318, 372
AccII	CGCG	1 cut(s)	17
AciI	CCGC	7 cut(s)	17, 195, 198, 318, 345, 372, 443
AclWI	GGATC	3 cut(s)	109, 711, 861
AcsI	RAATTY	1 cut(s)	578
AcyI	GRCGYC	2 cut(s)	311, 359
AdeI	CACNNNGTG	1 cut(s)	289
AfaI	GTAC	3 cut(s)	11, 422, 683
AfiI	CCNNNNNNNGG	2 cut(s)	73, 292
AgsI	TTSAA	3 cut(s)	340, 553, 815
AhdI	GACNNNNNGTC	1 cut(s)	310
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	4 cut(s)	37, 190, 436, 909
AluI	AGCT	4 cut(s)	37, 190, 436, 909
Alw21I	GWGCWC	2 cut(s)	285, 919
Alw26I	GTCTC	3 cut(s)	74, 347, 607
AlwI	GGATC	3 cut(s)	109, 711, 861
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	6 cut(s)	162, 171, 177, 183, 386, 792
ApaI	GGGCCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	578
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	4 cut(s)	162, 163, 304, 386
AsuC2I	CCSGG	4 cut(s)	160, 161, 287, 308
AsuHPI	GGTGA	2 cut(s)	133, 740
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	166
BanII	GRGCYC	2 cut(s)	66, 166
Bbv12I	GWGCWC	2 cut(s)	285, 919
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	411
BceAI	ACGGC	1 cut(s)	372
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	635
BcnI	CCSGG	4 cut(s)	160, 161, 287, 308
BcoDI	GTCTC	3 cut(s)	74, 347, 607
BfaI	CTAG	1 cut(s)	846
BfuI	GTATCC	1 cut(s)	635
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	18, 35, 195, 198, 444
BlpI	GCTNAGC	1 cut(s)	905
BlsI	GCNGC	5 cut(s)	19, 36, 196, 199, 445
Bme1390I	CCNGG	5 cut(s)	160, 161, 239, 287, 308
Bme18I	GGWCC	1 cut(s)	304
BmeRI	GACNNNNNGTC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	4 cut(s)	162, 163, 304, 386
BmiI	GGNNCC	4 cut(s)	65, 164, 387, 877
BmrFI	CCNGG	5 cut(s)	160, 161, 239, 287, 308
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	2 cut(s)	409, 657
BmuI	ACTGGG	1 cut(s)	782
BpmI	CTGGAG	2 cut(s)	201, 458
Bpu1102I	GCTNAGC	1 cut(s)	905
BpuMI	CCSGG	4 cut(s)	160, 161, 287, 308
Bsa29I	ATCGAT	1 cut(s)	865
BsaHI	GRCGYC	2 cut(s)	311, 359
BsaJI	CCNNGG	3 cut(s)	159, 174, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 292
Bse1I	ACTGG	3 cut(s)	218, 777, 870
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	1 cut(s)	865
BseDI	CCNNGG	3 cut(s)	159, 174, 180
BseGI	GGATG	2 cut(s)	672, 727
BseLI	CCNNNNNNNGG	2 cut(s)	73, 292
BseMII	CTCAG	3 cut(s)	419, 529, 911
BseNI	ACTGG	3 cut(s)	218, 777, 870
BseRI	GAGGAG	2 cut(s)	116, 479
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	6 cut(s)	164, 173, 179, 185, 388, 794
BshVI	ATCGAT	1 cut(s)	865
BsiHKAI	GWGCWC	2 cut(s)	285, 919
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	5 cut(s)	160, 278, 286, 307, 389
BslFI	GGGAC	2 cut(s)	346, 538
BslI	CCNNNNNNNGG	2 cut(s)	73, 292
BsmAI	GTCTC	3 cut(s)	74, 347, 607
BsmBI	CGTCTC	2 cut(s)	74, 347
BsmFI	GGGAC	2 cut(s)	346, 538
BsnI	GGCC	6 cut(s)	164, 173, 179, 185, 388, 794
BsoBI	CYCGRG	1 cut(s)	159
Bsp120I	GGGCCC	1 cut(s)	162
Bsp1286I	GDGCHC	4 cut(s)	66, 166, 285, 919
Bsp143I	GATC	5 cut(s)	114, 267, 703, 862, 866
Bsp1720I	GCTNAGC	1 cut(s)	905
BspACI	CCGC	7 cut(s)	17, 195, 198, 318, 345, 372, 443
BspANI	GGCC	6 cut(s)	164, 173, 179, 185, 388, 794
BspCNI	CTCAG	3 cut(s)	420, 528, 912
BspDI	ATCGAT	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	4 cut(s)	65, 164, 387, 877
BspPI	GGATC	3 cut(s)	109, 711, 861
BsrBI	CCGCTC	2 cut(s)	318, 372
BsrI	ACTGG	3 cut(s)	218, 777, 870
BssECI	CCNNGG	3 cut(s)	159, 174, 180
BssMI	GATC	5 cut(s)	114, 267, 703, 862, 866
BssNI	GRCGYC	2 cut(s)	311, 359
BssT1I	CCWWGG	2 cut(s)	174, 180
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	506, 647, 928
BstACI	GRCGYC	2 cut(s)	311, 359
BstC8I	GCNNGC	2 cut(s)	192, 902
BstDEI	CTNAG	4 cut(s)	428, 515, 905, 920
BstF5I	GGATG	2 cut(s)	672, 727
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	5 cut(s)	117, 270, 706, 865, 869
BstMAI	GTCTC	3 cut(s)	74, 347, 607
BstMBI	GATC	5 cut(s)	114, 267, 703, 862, 866
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 191, 324, 906
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	5 cut(s)	158, 159, 237, 285, 306
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	747
Bsu15I	ATCGAT	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	6 cut(s)	164, 173, 179, 185, 388, 794
BsuTUI	ATCGAT	1 cut(s)	865
BtgZI	GCGATG	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	2 cut(s)	672, 727
BtsIMutI	CAGTG	4 cut(s)	511, 523, 713, 877
Cac8I	GCNNGC	2 cut(s)	192, 902
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	4 cut(s)	162, 163, 304, 386
Cfr9I	CCCGGG	1 cut(s)	159
ClaI	ATCGAT	1 cut(s)	865
CpoI	CGGWCCG	1 cut(s)	304
CseI	GACGC	3 cut(s)	23, 300, 348
Csp6I	GTAC	3 cut(s)	10, 421, 682
CspI	CGGWCCG	1 cut(s)	304
CviAII	CATG	3 cut(s)	716, 747, 803
CviQI	GTAC	3 cut(s)	10, 421, 682
DdeI	CTNAG	4 cut(s)	428, 515, 905, 920
DpnI	GATC	5 cut(s)	116, 269, 705, 864, 868
DpnII	GATC	5 cut(s)	114, 267, 703, 862, 866
DraI	TTTAAA	1 cut(s)	583
DraIII	CACNNNGTG	1 cut(s)	289
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	174, 180
Eco24I	GRGCYC	2 cut(s)	66, 166
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	174, 180
EcoT38I	GRGCYC	2 cut(s)	66, 166
ErhI	CCWWGG	2 cut(s)	174, 180
Esp3I	CGTCTC	2 cut(s)	74, 347
FaeI	CATG	3 cut(s)	719, 750, 806
FaqI	GGGAC	2 cut(s)	346, 538
FatI	CATG	3 cut(s)	715, 746, 802
FauI	CCCGC	3 cut(s)	311, 338, 365
Fnu4HI	GCNGC	5 cut(s)	18, 35, 195, 198, 444
FokI	GGATG	2 cut(s)	679, 734
FriOI	GRGCYC	2 cut(s)	66, 166
Fsp4HI	GCNGC	5 cut(s)	18, 35, 195, 198, 444
FspBI	CTAG	1 cut(s)	846
GluI	GCNGC	5 cut(s)	18, 35, 195, 198, 444
GsuI	CTGGAG	2 cut(s)	201, 458
HaeIII	GGCC	6 cut(s)	164, 173, 179, 185, 388, 794
HapII	CCGG	5 cut(s)	160, 278, 286, 307, 389
HgaI	GACGC	3 cut(s)	23, 300, 348
Hin1I	GRCGYC	2 cut(s)	311, 359
Hin1II	CATG	3 cut(s)	719, 750, 806
HincII	GTYRAC	2 cut(s)	250, 688
HindII	GTYRAC	2 cut(s)	250, 688
HinfI	GANTC	2 cut(s)	87, 511
HpaII	CCGG	5 cut(s)	160, 278, 286, 307, 389
HphI	GGTGA	2 cut(s)	133, 740
Hpy166II	GTNNAC	5 cut(s)	28, 250, 423, 502, 688
Hpy188I	TCNGA	5 cut(s)	105, 304, 429, 891, 921
Hpy188III	TCNNGA	9 cut(s)	40, 112, 265, 271, 541, 701, 803, 812, 833
Hpy8I	GTNNAC	5 cut(s)	28, 250, 423, 502, 688
Hpy99I	CGWCG	5 cut(s)	17, 266, 316, 364, 451
HpyAV	CCTTC	3 cut(s)	223, 476, 568
HpyCH4III	ACNGT	3 cut(s)	506, 647, 928
HpyCH4IV	ACGT	2 cut(s)	261, 684
HpyCH4V	TGCA	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 191, 324, 906
HpyF3I	CTNAG	4 cut(s)	428, 515, 905, 920
HpySE526I	ACGT	2 cut(s)	261, 684
Hsp92I	GRCGYC	2 cut(s)	311, 359
Hsp92II	CATG	3 cut(s)	719, 750, 806
Kzo9I	GATC	5 cut(s)	114, 267, 703, 862, 866
LmnI	GCTCC	6 cut(s)	69, 161, 280, 369, 433, 914
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	2 cut(s)	409, 657
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	2 cut(s)	261, 684
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	5 cut(s)	116, 269, 705, 864, 868
MbiI	CCGCTC	2 cut(s)	318, 372
MboI	GATC	5 cut(s)	114, 267, 703, 862, 866
MboII	GAAGA	1 cut(s)	791
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	4 cut(s)	66, 166, 285, 919
MluCI	AATT	3 cut(s)	578, 600, 858
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	3 cut(s)	720, 745, 834
MspI	CCGG	5 cut(s)	160, 278, 286, 307, 389
MspR9I	CCNGG	5 cut(s)	160, 161, 239, 287, 308
MunI	CAATTG	1 cut(s)	600
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	170, 191, 324, 906
NciI	CCSGG	4 cut(s)	160, 161, 287, 308
NdeII	GATC	5 cut(s)	114, 267, 703, 862, 866
NlaIII	CATG	3 cut(s)	719, 750, 806
NlaIV	GGNNCC	4 cut(s)	65, 164, 387, 877
NmuCI	GTSAC	1 cut(s)	518
PagI	TCATGA	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 198, 258, 308
PfeI	GAWTC	2 cut(s)	87, 511
PflFI	GACNNNGTC	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	237
PkrI	GCNGC	5 cut(s)	19, 36, 196, 199, 445
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	4 cut(s)	65, 164, 387, 877
PspOMI	GGGCCC	1 cut(s)	162
PspPI	GGNCC	4 cut(s)	162, 163, 304, 386
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	3 cut(s)	11, 422, 683
RsaNI	GTAC	3 cut(s)	10, 421, 682
RseI	CAYNNNNRTG	3 cut(s)	720, 745, 834
Rsr2I	CGGWCCG	1 cut(s)	304
RsrII	CGGWCCG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	5 cut(s)	18, 35, 195, 198, 444
Sau3AI	GATC	5 cut(s)	114, 267, 703, 862, 866
Sau96I	GGNCC	4 cut(s)	162, 163, 304, 386
ScrFI	CCNGG	5 cut(s)	160, 161, 239, 287, 308
SduI	GDGCHC	4 cut(s)	66, 166, 285, 919
SfaNI	GCATC	2 cut(s)	409, 657
SfiI	GGCCNNNNNGGCC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	304
SmaI	CCCGGG	1 cut(s)	161
SmiMI	CAYNNNNRTG	3 cut(s)	720, 745, 834
Sse9I	AATT	3 cut(s)	578, 600, 858
SsiI	CCGC	7 cut(s)	17, 195, 198, 318, 345, 372, 443
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	1 cut(s)	846
StyD4I	CCNGG	5 cut(s)	158, 159, 237, 285, 306
StyI	CCWWGG	2 cut(s)	174, 180
TaaI	ACNGT	3 cut(s)	506, 647, 928
TaiI	ACGT	2 cut(s)	264, 687
TaqI	TCGA	6 cut(s)	41, 227, 264, 314, 832, 865
TasI	AATT	3 cut(s)	578, 600, 858
TauI	GCSGC	4 cut(s)	20, 197, 200, 446
TfiI	GAWTC	2 cut(s)	87, 511
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	4 cut(s)	511, 523, 713, 877
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	4 cut(s)	704, 776, 791, 818
TspGWI	ACGGA	2 cut(s)	56, 746
TspMI	CCCGGG	1 cut(s)	159
TspRI	CASTG	4 cut(s)	511, 523, 713, 877
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	578
XmaI	CCCGGG	1 cut(s)	159
XspI	CTAG	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.