Rroxscaffold_7G00162120

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
4742776 .. 4743153
378 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00162120.1

Sequence Viewer

Length: 285 bp
ATGGCTGCTACGTTGAGAAAGCTTGATGATTTAGTTGGGTTTTGTCACAGGGGACAAGCCGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACCGTGCCGAAGGTGCTCACGTGTATGTTGGTCTTCGGTTCCGATATGTCGTGATGCTTGTGTATGAGTATGTGTTGACAACAGAAACCCGGAACAATGGCTTCATGGAGATGTCGGGCCTCTCACCTCCTCGACATGGGAGAATCGCATGA

Protein Analysis

94

Amino Acids

10.8

Weight (kDa)

9.72

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 112
AcvI CACGTG 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 73, 80
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
Alw21I GWGCWC 1 cut(s) 151
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 1 cut(s) 249
BbrPI CACGTG 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 223
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 151
BspANI GGCC 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 158
BsuRI GGCC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 3 cut(s) 238, 269, 282
CviJI RGCY 6 cut(s) 5, 22, 59, 132, 234, 252
CviKI_1 RGCY 6 cut(s) 5, 22, 59, 132, 234, 252
Eco72I CACGTG 1 cut(s) 154
FaeI CATG 3 cut(s) 241, 272, 285
FaiI YATR 8 cut(s) 108, 159, 180, 198, 204, 239, 270, 283
FaqI GGGAC 1 cut(s) 66
FatI CATG 3 cut(s) 237, 268, 281
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 223
Hin1II CATG 3 cut(s) 241, 272, 285
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 276
HpaII CCGG 1 cut(s) 223
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 58, 137
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 2 cut(s) 11, 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 11, 153
Hsp92II CATG 3 cut(s) 241, 272, 285
LpnPI CCDG 2 cut(s) 34, 236
LweI GCATC 1 cut(s) 177
MaeII ACGT 2 cut(s) 11, 153
MaeIII GTNAC 1 cut(s) 44
MboII GAAGA 1 cut(s) 158
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 2 cut(s) 90, 112
MnlI CCTC 4 cut(s) 114, 263, 270, 273
MroXI GAANNNNTTC 1 cut(s) 68
MslI CAYNNNNRTG 2 cut(s) 156, 242
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 223
NlaIII CATG 3 cut(s) 241, 272, 285
NlaIV GGNNCC 1 cut(s) 173
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 1 cut(s) 7
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 156, 242
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 151
SetI ASST 7 cut(s) 14, 24, 78, 125, 148, 156, 262
SfaNI GCATC 1 cut(s) 177
SmiMI CAYNNNNRTG 2 cut(s) 156, 242
Sse9I AATT 2 cut(s) 90, 112
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 2 cut(s) 14, 156
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 90, 112
TfiI GAWTC 1 cut(s) 276
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 226
XapI RAATTY 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.