Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

54527897 .. 54529573

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTGCTACGTTGAGAAAGCTTGATGATTTAGTTGGGTTTTACTGCAGGGGACAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGCAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACTGTGCTGAAGGTGCTCACAGATATACACCAGTTCGTTCAGATTCAGTGGTTGGTGAACTGAGGTTGTCTGAGCCAACTGACATTATTCTTCCAGAGCTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTGATGTTCTTACCGTTGTTGAAGTGATCCCAGAGAGTTTGACTCAACAGCTTGTTTGGCACAAGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGGACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATCTGTTTGGAAGGTCAGCTAAGCCTGCATATGCTGAAACTGGACCAATACTACGAGGAATTCCTAGAATTGATAAGCTGGAGATCGAAGGGAGGGGTTTCCACACCAACTTATATGTTGTACGTGGCATTTATAGTGGAGGGAAGGAAGGCAAAAGTAGAATACAGTGGCTCAGATCATTGGTTGGGAGTCCTGATCTTATCTCTATACCCGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

228

Amino Acids

25.35

Weight (kDa)

8.71

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IG_AIR9	PF23197	179 - 222	5.7e-06	AIR9 A9 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	397
AclWI	GGATC	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	112, 525
AcuI	CTGAAG	2 cut(s)	162, 336
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	588
AgsI	TTSAA	4 cut(s)	73, 80, 299, 380
AluBI	AGCT	6 cut(s)	22, 59, 232, 328, 485, 544
AluI	AGCT	6 cut(s)	22, 59, 232, 328, 485, 544
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	298
ApeKI	GCWGC	2 cut(s)	5, 86
ApoI	RAATTY	2 cut(s)	112, 525
Asp700I	GAANNNNTTC	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	2 cut(s)	200, 290
AvaII	GGWCC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	242, 531
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	6, 87
BlpI	GCTNAGC	2 cut(s)	393, 486
BlsI	GCNGC	2 cut(s)	7, 88
Bme1390I	CCNGG	1 cut(s)	678
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	678
BmsI	GCATC	2 cut(s)	237, 405
BplI	GAGNNNNNCTC	2 cut(s)	304, 336
BpmI	CTGGAG	1 cut(s)	566
Bpu1102I	GCTNAGC	2 cut(s)	393, 486
BpuMI	CCSGG	1 cut(s)	678
BsaAI	YACGTR	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	429
Bse1I	ACTGG	3 cut(s)	164, 265, 511
BseMII	CTCAG	5 cut(s)	51, 185, 195, 407, 652
BseNI	ACTGG	3 cut(s)	164, 265, 511
BseXI	GCAGC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	303, 466, 549, 641, 661
Bsp1720I	GCTNAGC	2 cut(s)	393, 486
BspCNI	CTCAG	5 cut(s)	52, 186, 196, 406, 651
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	1 cut(s)	298
BsrI	ACTGG	3 cut(s)	164, 265, 511
BssMI	GATC	5 cut(s)	303, 466, 549, 641, 661
BssNI	GRCGYC	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	137, 292, 633
BstACI	GRCGYC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	252, 492
BstDEI	CTNAG	6 cut(s)	60, 194, 204, 393, 486, 638
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	5 cut(s)	306, 469, 552, 644, 664
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	5 cut(s)	303, 466, 549, 641, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 334, 491
BstSCI	CCNGG	1 cut(s)	676
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	4 cut(s)	186, 258, 363, 638
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	252, 492
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	587
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	6 cut(s)	60, 194, 204, 393, 486, 638
DpnI	GATC	5 cut(s)	305, 468, 551, 643, 663
DpnII	GATC	5 cut(s)	303, 466, 549, 641, 661
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	2 cut(s)	162, 336
EcoRI	GAATTC	1 cut(s)	525
FaiI	YATR	9 cut(s)	108, 159, 496, 498, 580, 582, 600, 674, 683
FaqI	GGGAC	1 cut(s)	66
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	6, 87
Fsp4HI	GCNGC	2 cut(s)	6, 87
FspBI	CTAG	2 cut(s)	242, 531
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	2 cut(s)	6, 87
GsuI	CTGGAG	1 cut(s)	566
HaeII	RGCGCY	1 cut(s)	439
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	1 cut(s)	438
Hin1I	GRCGYC	1 cut(s)	429
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	3 cut(s)	176, 319, 655
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	2 cut(s)	200, 290
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	4 cut(s)	175, 205, 237, 641
Hpy188III	TCNNGA	2 cut(s)	227, 659
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	7 cut(s)	58, 137, 269, 471, 548, 604, 608
HpyCH4III	ACNGT	3 cut(s)	137, 292, 633
HpyCH4IV	ACGT	3 cut(s)	11, 429, 589
HpyCH4V	TGCA	3 cut(s)	48, 456, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 334, 491
HpyF3I	CTNAG	6 cut(s)	60, 194, 204, 393, 486, 638
HpySE526I	ACGT	3 cut(s)	11, 429, 589
Hsp92I	GRCGYC	1 cut(s)	429
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	5 cut(s)	303, 466, 549, 641, 661
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	237, 405
MaeI	CTAG	2 cut(s)	242, 531
MaeII	ACGT	3 cut(s)	11, 429, 589
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	5 cut(s)	305, 468, 551, 643, 663
MboI	GATC	5 cut(s)	303, 466, 549, 641, 661
MboII	GAAGA	2 cut(s)	215, 342
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	90, 112, 525, 534
MlyI	GAGTC	2 cut(s)	313, 664
MnlI	CCTC	6 cut(s)	114, 189, 418, 515, 552, 599
MroXI	GAANNNNTTC	1 cut(s)	68
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	678
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	146, 334, 491
NciI	CCSGG	1 cut(s)	678
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	5 cut(s)	303, 466, 549, 641, 661
NmuCI	GTSAC	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	7, 88
PleI	GAGTC	2 cut(s)	313, 663
PpsI	GAGTC	2 cut(s)	313, 663
Ppu21I	YACGTR	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SatI	GCNGC	2 cut(s)	6, 87
Sau3AI	GATC	5 cut(s)	303, 466, 549, 641, 661
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	2 cut(s)	313, 664
ScrFI	CCNGG	1 cut(s)	678
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	237, 405
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	509
Sse9I	AATT	4 cut(s)	90, 112, 525, 534
SspMI	CTAG	2 cut(s)	242, 531
StyD4I	CCNGG	1 cut(s)	676
TaaI	ACNGT	3 cut(s)	137, 292, 633
TaiI	ACGT	3 cut(s)	14, 432, 592
TaqI	TCGA	2 cut(s)	273, 552
TasI	AATT	4 cut(s)	90, 112, 525, 534
TfiI	GAWTC	1 cut(s)	176
TscAI	CASTG	4 cut(s)	186, 265, 363, 638
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	2 cut(s)	5, 86
Tsp45I	GTSAC	1 cut(s)	460
TspRI	CASTG	4 cut(s)	186, 265, 363, 638
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	2 cut(s)	112, 525
XmnI	GAANNNNTTC	1 cut(s)	68
XspI	CTAG	2 cut(s)	242, 531
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.