Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

48131515 .. 48133906

Gene Structure 2392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCAGTGTACGACGCGGCGTTCGTGAACTCGGAGCTCTCGAAACCCACTTCCATCTTCGGCCTCCATCTCTGGGTCGTCATCGGAATCCTCGTCGGCTCTCTGATAGTCCTGACCCTCTTCCTCCTCTCCCTCTGCCTCACCGCCCGCCACCGCCACAAGGCCCACAAAGCCCACAACCCCAACAAGCTCGCCGCCGTGCCCAGCCCAGTAATCTCTAAAGAAATCCAGGAAATCGTCCACCACCCCCAGCCGGAAGTCCACGTCGAGATCGGGAAGCCCGACCACCGCGTCGTCGTGTTCTCCGACCGCGCCTCCAGCGGCGAGAGCAAGGGGACTCTGAACAGCGAAACGGCGTCGTTTGCGAGCGGCAACGTGGTGGGTCCCGAGGTTTCGCATCTGGGGTGGGGGAGGTGGTACACTTTGAGAGAGCTGGAGGCTGCGACTAATGGGTTGTGTGAAGAAAATGTGATTGGAGAAGGTGGGTATGGGATTGTGTACAGTGGGATTCTCAGTGATGGGACTAAGGTCGCTGTTAAGAACTTGTTGAATAACAGGGGTCAAGCTGAGAAGGAATTTAAAGTGGAGGTGGAAGTAATTGGGCGTGTGAGACATAAAAATCTTGTGAGGTTGCTCGGATACTGTGTTGAAGGTGCATACAGGATGCTTGTGTATGAGTACGTTGACAATGGCAATCTGGATCAATGGCTTCATGGGGATGTTGGTGAAGTCAGCCCTCTAACGTGGGATATTCGAATGAATATTATATTGGGAACCGCAAAAGGCTCCCTCATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

266

Amino Acids

29.11

Weight (kDa)

6.46

Isoelectric Point (pI)

26.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	155 - 260	6.5e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	155 - 238	1.5e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	369
AccII	CGCG	3 cut(s)	17, 291, 312
AclWI	GGATC	1 cut(s)	708
AcsI	RAATTY	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	4 cut(s)	11, 419, 500, 680
AfiI	CCNNNNNNNGG	3 cut(s)	73, 160, 253
AgsI	TTSAA	2 cut(s)	550, 650
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	4 cut(s)	456, 488, 752, 784
AluBI	AGCT	4 cut(s)	37, 190, 433, 566
AluI	AGCT	4 cut(s)	37, 190, 433, 566
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	1 cut(s)	708
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	2 cut(s)	61, 162
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	575
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	163, 383
AsuHPI	GGTGA	2 cut(s)	133, 737
AsuII	TTCGAA	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	62, 75, 512
BceAI	ACGGC	2 cut(s)	182, 369
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	632
BcoDI	GTCTC	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	632
BisI	GCNGC	5 cut(s)	18, 195, 322, 370, 441
BlsI	GCNGC	5 cut(s)	19, 196, 323, 371, 442
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	386
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	2 cut(s)	163, 383
BmiI	GGNNCC	4 cut(s)	384, 385, 775, 787
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	406, 654
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	301, 455
Bpu14I	TTCGAA	1 cut(s)	754
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 160, 253
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	669, 724
BseLI	CCNNNNNNNGG	3 cut(s)	73, 160, 253
BseMII	CTCAG	2 cut(s)	526, 558
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	2 cut(s)	203, 249
Bsh1236I	CGCG	3 cut(s)	17, 291, 312
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	2 cut(s)	63, 164
BsiEI	CGRYCG	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	39
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	3 cut(s)	349, 369, 535
BslI	CCNNNNNNNGG	3 cut(s)	73, 160, 253
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	3 cut(s)	349, 369, 535
BsnI	GGCC	2 cut(s)	63, 164
BsoBI	CYCGRG	1 cut(s)	386
Bsp119I	TTCGAA	1 cut(s)	754
Bsp1286I	GDGCHC	2 cut(s)	39, 204
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	270, 700
BspANI	GGCC	2 cut(s)	63, 164
BspCNI	CTCAG	2 cut(s)	525, 559
BspFNI	CGCG	3 cut(s)	17, 291, 312
BspLI	GGNNCC	4 cut(s)	384, 385, 775, 787
BspPI	GGATC	1 cut(s)	708
BspT104I	TTCGAA	1 cut(s)	754
BsrBI	CCGCTC	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	2 cut(s)	270, 700
BssNI	GRCGYC	1 cut(s)	356
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	503, 644
Bst6I	CTCTTC	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	754
BstC8I	GCNNGC	3 cut(s)	148, 192, 367
BstDEI	CTNAG	3 cut(s)	512, 525, 567
BstF5I	GGATG	2 cut(s)	669, 724
BstFNI	CGCG	3 cut(s)	17, 291, 312
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	273, 703
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	2 cut(s)	270, 700
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 318, 327, 362
BstNI	CCWGG	1 cut(s)	230
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	204
BstUI	CGCG	3 cut(s)	17, 291, 312
BstV1I	GCAGC	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	632
BsuRI	GGCC	2 cut(s)	63, 164
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	669, 724
BtsIMutI	CAGTG	3 cut(s)	12, 508, 520
Cac8I	GCNNGC	3 cut(s)	148, 192, 367
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	163, 383
CseI	GACGC	3 cut(s)	23, 280, 345
Csp6I	GTAC	4 cut(s)	10, 418, 499, 679
CviAII	CATG	1 cut(s)	713
CviQI	GTAC	4 cut(s)	10, 418, 499, 679
DdeI	CTNAG	3 cut(s)	512, 525, 567
DpnI	GATC	2 cut(s)	272, 702
DpnII	GATC	2 cut(s)	270, 700
DraI	TTTAAA	1 cut(s)	580
DrdI	GACNNNNNNGTC	1 cut(s)	290
DseDI	GACNNNNNNGTC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	37
Eco88I	CYCGRG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	1 cut(s)	716
FaiI	YATR	6 cut(s)	489, 615, 658, 675, 714, 767
FaqI	GGGAC	3 cut(s)	349, 369, 535
FatI	CATG	1 cut(s)	712
FauI	CCCGC	1 cut(s)	155
Fnu4HI	GCNGC	5 cut(s)	18, 195, 322, 370, 441
FokI	GGATG	2 cut(s)	676, 731
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	18, 195, 322, 370, 441
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	5 cut(s)	18, 195, 322, 370, 441
GsaI	CCCAGC	2 cut(s)	207, 253
GsuI	CTGGAG	2 cut(s)	301, 455
HaeIII	GGCC	2 cut(s)	63, 164
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	3 cut(s)	23, 280, 345
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	1 cut(s)	716
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	87, 337, 508
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	2 cut(s)	133, 737
Hpy166II	GTNNAC	7 cut(s)	10, 28, 241, 262, 420, 499, 685
Hpy188I	TCNGA	6 cut(s)	34, 86, 105, 307, 342, 638
Hpy188III	TCNNGA	7 cut(s)	25, 40, 112, 268, 274, 386, 698
Hpy8I	GTNNAC	7 cut(s)	10, 28, 241, 262, 420, 499, 685
Hpy99I	CGWCG	6 cut(s)	17, 98, 269, 296, 299, 361
HpyAV	CCTTC	3 cut(s)	473, 565, 644
HpyCH4III	ACNGT	2 cut(s)	503, 644
HpyCH4IV	ACGT	4 cut(s)	264, 375, 681, 743
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 318, 327, 362
HpyF3I	CTNAG	3 cut(s)	512, 525, 567
HpySE526I	ACGT	4 cut(s)	264, 375, 681, 743
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	716
HspAI	GCGC	1 cut(s)	312
KflI	GGGWCCC	1 cut(s)	383
Kzo9I	GATC	2 cut(s)	270, 700
LmnI	GCTCC	2 cut(s)	34, 791
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	406, 654
MaeII	ACGT	4 cut(s)	264, 375, 681, 743
MalI	GATC	2 cut(s)	272, 702
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	2 cut(s)	270, 700
MboII	GAAGA	3 cut(s)	49, 112, 473
MhlI	GDGCHC	2 cut(s)	39, 204
MluCI	AATT	2 cut(s)	575, 597
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	330
MseI	TTAA	2 cut(s)	537, 579
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	3 cut(s)	17, 291, 312
MwoI	GCNNNNNNNGC	4 cut(s)	170, 318, 327, 362
NdeII	GATC	2 cut(s)	270, 700
NlaIII	CATG	1 cut(s)	716
NlaIV	GGNNCC	4 cut(s)	384, 385, 775, 787
NspV	TTCGAA	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	5 cut(s)	21, 38, 90, 279, 303
PfeI	GAWTC	2 cut(s)	87, 508
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	19, 196, 323, 371, 442
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	2 cut(s)	203, 249
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	384, 385, 775, 787
PspPI	GGNCC	2 cut(s)	163, 383
PspPPI	RGGWCCY	1 cut(s)	383
RsaI	GTAC	4 cut(s)	11, 419, 500, 680
RsaNI	GTAC	4 cut(s)	10, 418, 499, 679
RseI	CAYNNNNRTG	1 cut(s)	717
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	537, 579
SatI	GCNGC	5 cut(s)	18, 195, 322, 370, 441
Sau3AI	GATC	2 cut(s)	270, 700
Sau96I	GGNCC	2 cut(s)	163, 383
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	39, 204
SfaNI	GCATC	2 cut(s)	406, 654
SfuI	TTCGAA	1 cut(s)	754
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	2 cut(s)	575, 597
SspI	AATATT	1 cut(s)	763
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	503, 644
TaiI	ACGT	4 cut(s)	267, 378, 684, 746
TaqI	TCGA	3 cut(s)	41, 267, 754
TasI	AATT	2 cut(s)	575, 597
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	4 cut(s)	20, 197, 324, 372
TfiI	GAWTC	2 cut(s)	87, 508
Tru1I	TTAA	2 cut(s)	537, 579
Tru9I	TTAA	2 cut(s)	537, 579
TscAI	CASTG	3 cut(s)	12, 508, 520
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	2 cut(s)	701, 773
TspRI	CASTG	3 cut(s)	12, 508, 520
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.