Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

73996175 .. 73998414

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G042170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTGCTACGTTGAGAAAGCTTGATGATTTAGTTGGGTTTTGCTGCAGGGGACAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAACCACTTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACTGTGCTGAAGGTGCTCACAGTCAAGGTAGTGCCATACTGGATGTTACTTCCGGGGGAAATATGACTGATTACTTTCAATCAACATACAAATTTATGGAGATTTCCTCACATGCTTTGATCCCCATGCATGGGAGAGTTAACCTCTGGCCAAAGCACATGCTTTGTGGATATCTCAGAGATCCTTCAGAGGACAAACTTGTTGAGCACTTTCTTATTGACTCGGGCATAGAGGAGAGCAAGAAAACAAAGATTGTAAAGATCATCAATGGAATGGGTAAGTTGGTTGCTGTTATCTCAAGGTGTTGTGCCATTTTAGCATATGTAGTAGTCTCAAGCACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0031974 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

8.52

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	247, 308
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	112, 224
AcuI	CTGAAG	2 cut(s)	162, 303
AfiI	CCNNNNNNNGG	2 cut(s)	263, 264
AgsI	TTSAA	3 cut(s)	73, 80, 212
AluBI	AGCT	2 cut(s)	22, 59
AluI	AGCT	2 cut(s)	22, 59
Alw21I	GWGCWC	2 cut(s)	151, 342
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	2 cut(s)	247, 308
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	5, 45
ApoI	RAATTY	2 cut(s)	112, 224
Asp700I	GAANNNNTTC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	187
AvaI	CYCGRG	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	151, 342
BbvI	GCAGC	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	2 cut(s)	6, 46
BlsI	GCNGC	2 cut(s)	7, 47
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	187
BplI	GAGNNNNNCTC	4 cut(s)	224, 256, 261, 293
BpuEI	CTTGAG	2 cut(s)	415, 451
BpuMI	CCSGG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 264
Bse1I	ACTGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	263, 264
BseMII	CTCAG	2 cut(s)	51, 322
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	151, 342
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	2 cut(s)	263, 264
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	2 cut(s)	151, 342
Bsp143I	GATC	3 cut(s)	252, 313, 393
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	52, 321
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	50
BspPI	GGATC	2 cut(s)	247, 308
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	252, 313, 393
Bst4CI	ACNGT	2 cut(s)	137, 155
BstDEI	CTNAG	2 cut(s)	60, 308
BstF5I	GGATG	1 cut(s)	181
BstKTI	GATC	3 cut(s)	255, 316, 396
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	252, 313, 393
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 449
BstNSI	RCATGY	2 cut(s)	248, 295
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	181
CviAII	CATG	4 cut(s)	245, 259, 263, 292
CviJI	RGCY	5 cut(s)	5, 22, 59, 132, 283
CviKI_1	RGCY	5 cut(s)	5, 22, 59, 132, 283
DdeI	CTNAG	2 cut(s)	60, 308
DpnI	GATC	3 cut(s)	254, 315, 395
DpnII	GATC	3 cut(s)	252, 313, 393
EaeI	YGGCCR	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	162, 303
Eco88I	CYCGRG	1 cut(s)	355
EcoRV	GATATC	1 cut(s)	305
EcoT22I	ATGCAT	1 cut(s)	264
FaeI	CATG	4 cut(s)	248, 262, 266, 295
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	4 cut(s)	244, 258, 262, 291
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	2 cut(s)	6, 46
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	6, 46
GluI	GCNGC	2 cut(s)	6, 46
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	4 cut(s)	248, 262, 266, 295
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	353
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	3 cut(s)	311, 322, 479
Hpy8I	GTNNAC	1 cut(s)	274
HpyAV	CCTTC	3 cut(s)	58, 137, 327
HpyCH4III	ACNGT	2 cut(s)	137, 155
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	48, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 449
HpyF3I	CTNAG	2 cut(s)	60, 308
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	248, 262, 266, 295
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	252, 313, 393
LpnPI	CCDG	4 cut(s)	34, 158, 199, 265
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	254, 315, 395
MboI	GATC	3 cut(s)	252, 313, 393
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	151, 342
MlsI	TGGCCA	1 cut(s)	283
MluCI	AATT	2 cut(s)	112, 224
MluNI	TGGCCA	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	114, 250, 287, 316, 358
Mox20I	TGGCCA	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	283
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	146, 449
NciI	CCSGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	3 cut(s)	252, 313, 393
NlaIII	CATG	4 cut(s)	248, 262, 266, 295
NlaIV	GGNNCC	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	264
NspI	RCATGY	2 cut(s)	248, 295
PdmI	GAANNNNTTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	7, 47
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	87
PstI	CTGCAG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	313
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	6, 46
Sau3AI	GATC	3 cut(s)	252, 313, 393
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	2 cut(s)	151, 342
SfcI	CTRYAG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	430, 466
SmoI	CTYRAG	2 cut(s)	430, 466
Sse9I	AATT	2 cut(s)	112, 224
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	137, 155
TaiI	ACGT	1 cut(s)	14
TasI	AATT	2 cut(s)	112, 224
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseI	GCWGC	2 cut(s)	5, 45
XapI	RAATTY	2 cut(s)	112, 224
XceI	RCATGY	2 cut(s)	248, 295
XmnI	GAANNNNTTC	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.