Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

54612947 .. 54615174

Gene Structure 2228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTGACACCGGTGACAAGAAGCCTAATGCCAATGCTAAGGTGAAAGTCAAGCATGGAGGTGGTGGTGGTGGTGGGGGGAAGAAGAAGGAGGTGAAGAAAGAAACCGGCCTCGGTTTGACCAAGAAGAAGGATGAGAATTTTGGGGAGTGGTATTCGGAGGCCATGGACAATGGCAATATGGGAGACCATGCAAGATCATATAACGGGTTTGCTGATGAGAATGTGATTGATGAAGGTGGATATGGGATTGTGTACAGAGGTGTTTTGGAGGACAACTCAATGGTTGCAGTCAAGAATTTGCTCAATAACAAGGGACAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACTGTGCTGAAGGTGCTCACAGGATGCTTGTGTATGAGTATGTTGACAACGGAAACCTGGAACAATGGCTTCATGGAGATGTCGGGCCTCTCAGCCCTCTGACATGGGAGAATCGCATGAATATAATACTTGGGACAGCGAAAGGAGGTCTTGTCAAGCTCAAAAGTCTATGTATAATATCTTGCGAGAAGATCGAAGCAATAGTCCCAGCAGATGAAGGTGAAGAAACAGAGGATGAAAGCAATTGCCAGTCATTGGAAGCAATTTTTGCCTTGGAAGGATCGGGACATCACATCAAAGAGATCAACTTCCTTAGTTTGAGGCGGTTGAAACTTGAAGGTCTACCAAGCTTCACTGGAATGAGCAAAAGTACTTGCAAGGGGATGGAAAGGCAACTGGAAGTCAGCAGTCTCCATCGCAATAGTTTGACCGTTGAACATTCACTTTTCTCTGACCCCAAGGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

288

Amino Acids

31.61

Weight (kDa)

6.04

Isoelectric Point (pI)

23.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	73 - 164	1.3e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 181	7.4e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccI	GTMKAC	1 cut(s)	739
AciI	CCGC	1 cut(s)	721
AclWI	GGATC	1 cut(s)	685
AcsI	RAATTY	3 cut(s)	139, 298, 376
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	2 cut(s)	257, 769
AfiI	CCNNNNNNNGG	1 cut(s)	652
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	337, 344, 727, 734, 833
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	3 cut(s)	323, 556, 747
AluI	AGCT	3 cut(s)	323, 556, 747
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	2 cut(s)	180, 812
AlwI	GGATC	1 cut(s)	685
AoxI	GGCC	3 cut(s)	109, 162, 482
ApoI	RAATTY	3 cut(s)	139, 298, 376
ArsI	GACNNNNNNTTYG	2 cut(s)	585, 617
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	4 cut(s)	26, 55, 106, 629
Bbv12I	GWGCWC	1 cut(s)	415
BccI	CCATC	2 cut(s)	775, 819
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	180, 812
BmcAI	AGTACT	1 cut(s)	769
Bme1390I	CCNGG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	411
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
Bpu10I	CCTNAGC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	112, 165, 669, 855
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse118I	RCCGGY	2 cut(s)	11, 107
Bse1I	ACTGG	3 cut(s)	646, 757, 798
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	4 cut(s)	112, 165, 669, 855
BseGI	GGATG	4 cut(s)	139, 426, 637, 786
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMII	CTCAG	2 cut(s)	315, 502
BseNI	ACTGG	3 cut(s)	646, 757, 798
BseYI	CCCAGC	1 cut(s)	604
BshFI	GGCC	3 cut(s)	111, 164, 484
BshTI	ACCGGT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	12, 108
BslFI	GGGAC	4 cut(s)	330, 544, 587, 696
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	2 cut(s)	180, 812
BsmFI	GGGAC	4 cut(s)	330, 544, 587, 696
BsnI	GGCC	3 cut(s)	111, 164, 484
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	197, 588, 677, 699
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	721
BspANI	GGCC	3 cut(s)	111, 164, 484
BspCNI	CTCAG	2 cut(s)	316, 501
BspPI	GGATC	1 cut(s)	685
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	2 cut(s)	11, 107
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	646, 757, 798
BssAI	RCCGGY	2 cut(s)	11, 107
BssECI	CCNNGG	4 cut(s)	112, 165, 669, 855
BssMI	GATC	4 cut(s)	197, 588, 677, 699
BssT1I	CCWWGG	3 cut(s)	165, 669, 855
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	2 cut(s)	401, 829
BstAPI	GCANNNNNTGC	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	39, 324, 488, 710
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	139, 426, 637, 786
BstKTI	GATC	4 cut(s)	200, 591, 680, 702
BstMAI	GTCTC	2 cut(s)	180, 812
BstMBI	GATC	4 cut(s)	197, 588, 677, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 665
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BsuRI	GGCC	3 cut(s)	111, 164, 484
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	797
BtsCI	GGATG	4 cut(s)	139, 426, 637, 786
BtsIMutI	CAGTG	1 cut(s)	750
Cfr10I	RCCGGY	2 cut(s)	11, 107
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	2 cut(s)	256, 768
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	6 cut(s)	56, 166, 191, 470, 501, 514
CviQI	GTAC	2 cut(s)	256, 768
DdeI	CTNAG	4 cut(s)	39, 324, 488, 710
DpnI	GATC	4 cut(s)	199, 590, 679, 701
DpnII	GATC	4 cut(s)	197, 588, 677, 699
Eco130I	CCWWGG	3 cut(s)	165, 669, 855
Eco31I	GGTCTC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	3 cut(s)	165, 669, 855
ErhI	CCWWGG	3 cut(s)	165, 669, 855
FaeI	CATG	6 cut(s)	59, 169, 194, 473, 504, 517
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	4 cut(s)	330, 544, 587, 696
FatI	CATG	6 cut(s)	55, 165, 190, 469, 500, 513
FblI	GTMKAC	1 cut(s)	739
FokI	GGATG	4 cut(s)	146, 433, 644, 793
GsaI	CCCAGC	1 cut(s)	608
HaeIII	GGCC	3 cut(s)	111, 164, 484
HapII	CCGG	2 cut(s)	12, 108
Hin1II	CATG	6 cut(s)	59, 169, 194, 473, 504, 517
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	745
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	2 cut(s)	12, 108
HphI	GGTGA	4 cut(s)	26, 55, 106, 629
Hpy166II	GTNNAC	3 cut(s)	256, 442, 740
Hpy188I	TCNGA	3 cut(s)	160, 498, 850
Hpy188III	TCNNGA	2 cut(s)	295, 681
Hpy8I	GTNNAC	3 cut(s)	256, 442, 740
HpyAV	CCTTC	8 cut(s)	82, 124, 230, 322, 401, 608, 668, 728
HpyCH4III	ACNGT	2 cut(s)	401, 829
HpyCH4V	TGCA	3 cut(s)	194, 290, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 665
HpyF3I	CTNAG	4 cut(s)	39, 324, 488, 710
Hsp92II	CATG	6 cut(s)	59, 169, 194, 473, 504, 517
Kzo9I	GATC	4 cut(s)	197, 588, 677, 699
LpnPI	CCDG	9 cut(s)	25, 121, 403, 440, 467, 618, 659, 738, 779
LweI	GCATC	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	4 cut(s)	199, 590, 679, 701
MboI	GATC	4 cut(s)	197, 588, 677, 699
MboII	GAAGA	6 cut(s)	94, 97, 109, 139, 598, 632
MfeI	CAATTG	2 cut(s)	354, 640
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	6 cut(s)	139, 298, 354, 376, 640, 660
MroXI	GAANNNNTTC	1 cut(s)	332
MslI	CAYNNNNRTG	3 cut(s)	60, 474, 755
MspI	CCGG	2 cut(s)	12, 108
MspR9I	CCNGG	1 cut(s)	455
MunI	CAATTG	2 cut(s)	354, 640
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	410, 665
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	197, 588, 677, 699
NlaIII	CATG	6 cut(s)	59, 169, 194, 473, 504, 517
NmuCI	GTSAC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	508
PflMI	CCANNNNNTGG	1 cut(s)	652
PinAI	ACCGGT	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	482
RsaI	GTAC	2 cut(s)	257, 769
RsaNI	GTAC	2 cut(s)	256, 768
RseI	CAYNNNNRTG	3 cut(s)	60, 474, 755
Sau3AI	GATC	4 cut(s)	197, 588, 677, 699
Sau96I	GGNCC	1 cut(s)	482
ScaI	AGTACT	1 cut(s)	769
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	411
SgrAI	CRCCGGYG	1 cut(s)	11
SmiMI	CAYNNNNRTG	3 cut(s)	60, 474, 755
Sse9I	AATT	6 cut(s)	139, 298, 354, 376, 640, 660
SsiI	CCGC	1 cut(s)	721
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	3 cut(s)	165, 669, 855
TaaI	ACNGT	2 cut(s)	401, 829
TaqI	TCGA	1 cut(s)	591
TasI	AATT	6 cut(s)	139, 298, 354, 376, 640, 660
TatI	WGTACW	2 cut(s)	255, 767
TfiI	GAWTC	1 cut(s)	508
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	14
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	249, 458, 530, 627, 648
TspGWI	ACGGA	1 cut(s)	462
TspRI	CASTG	1 cut(s)	757
Van91I	CCANNNNNTGG	1 cut(s)	652
XapI	RAATTY	3 cut(s)	139, 298, 376
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.