Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Forward (+)

51159029 .. 51161275

Gene Structure 2247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGGCGGCGGGCGGCGAGTATCGGCGCCGTACGAGCGAGGAGGTTTTCTTATTGGATGCGGGCTCTGTTTGGACTCTTCTCCATTGCGGCCTCGTTTTGTTTGTGGTGCACCATAACCAAGGCGAAGACGGGTCGAACAGCCCGTCTTGGCGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACTTGTCTTTGAAGGTGCTCACGCTCAAAAAACACTTTCTGAATTTGGTTGTGGTATTATTGCCCTCCGAGTTTCCGAGACTAGAGATGCTTGCTCTCACTGGAAAAGCAATCGAAGGTTCTTTTCTTCAGCGAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGAACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACTGATGTGTTTGGAAGGTCAGCTGAGCCTGCATATGCTGAAACTGGACCAATACTACGAGTCCTTAGGTACTTGGGGATGTTTGGTGTGGTCAGCGTCACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0001578 GO:0001669 GO:0002177 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0006996 GO:0007010 GO:0007017 GO:0007276 GO:0007283 GO:0008150 GO:0009987 GO:0012505 GO:0015630 GO:0016043 GO:0019953 GO:0022414 GO:0022607 GO:0030030 GO:0030031 GO:0030141 GO:0031410 GO:0031982 GO:0032501 GO:0032504 GO:0035082 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044782 GO:0048232 GO:0048609 GO:0051704 GO:0060271 GO:0070925 GO:0071840 GO:0097223 GO:0097708 GO:0099503 GO:0120031 GO:0120036

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4

Protein Analysis

190

Amino Acids

21.45

Weight (kDa)

10.26

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	6 cut(s)	4, 7, 10, 14, 61, 89
AcsI	RAATTY	2 cut(s)	205, 268
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	33, 536
AgsI	TTSAA	4 cut(s)	166, 173, 238, 383
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw21I	GWGCWC	2 cut(s)	113, 246
Alw26I	GTCTC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	90
ApaLI	GTGCAC	1 cut(s)	109
ApoI	RAATTY	2 cut(s)	205, 268
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	2 cut(s)	29, 441
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	512
AxyI	CCTNAGG	1 cut(s)	530
BaeGI	GKGCMC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	2 cut(s)	113, 246
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	2 cut(s)	30, 442
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	4 cut(s)	5, 8, 15, 90
BlpI	GCTNAGC	2 cut(s)	396, 489
BlsI	GCNGC	4 cut(s)	6, 9, 16, 91
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	3 cut(s)	48, 303, 408
BpiI	GAAGAC	1 cut(s)	134
Bpu1102I	GCTNAGC	2 cut(s)	396, 489
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	331, 514
Bse21I	CCTNAGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	63, 549
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	410, 480
BseNI	ACTGG	2 cut(s)	331, 514
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	113, 246
BsiWI	CGTACG	1 cut(s)	31
BsmAI	GTCTC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	3 cut(s)	67, 113, 246
Bsp1720I	GCTNAGC	2 cut(s)	396, 489
BspACI	CCGC	6 cut(s)	4, 7, 10, 14, 61, 89
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	2 cut(s)	409, 481
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	400
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	331, 514
BssECI	CCNNGG	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	83
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	12, 63, 318, 495
BstDEI	CTNAG	3 cut(s)	396, 489, 530
BstF5I	GGATG	2 cut(s)	63, 549
BstH2I	RGCGCY	2 cut(s)	30, 442
BstHHI	GCGC	2 cut(s)	29, 441
BstMAI	GTCTC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 494
BstSLI	GKGCMC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	134
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	2 cut(s)	63, 549
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	4 cut(s)	12, 63, 318, 495
CfoI	GCGC	2 cut(s)	29, 441
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	32, 535
CviJI	RGCY	6 cut(s)	65, 92, 143, 225, 488, 493
CviKI_1	RGCY	6 cut(s)	65, 92, 143, 225, 488, 493
CviQI	GTAC	2 cut(s)	32, 535
DdeI	CTNAG	3 cut(s)	396, 489, 530
DinI	GGCGCC	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	67
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	120
FaiI	YATR	4 cut(s)	116, 201, 499, 501
FauI	CCCGC	2 cut(s)	3, 54
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	4 cut(s)	5, 8, 15, 90
FokI	GGATG	2 cut(s)	70, 556
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	5, 8, 15, 90
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	2 cut(s)	28, 440
GluI	GCNGC	4 cut(s)	5, 8, 15, 90
HaeII	RGCGCY	2 cut(s)	30, 442
HaeIII	GGCC	1 cut(s)	92
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	2 cut(s)	29, 441
Hin1I	GRCGYC	1 cut(s)	27
Hin6I	GCGC	2 cut(s)	27, 439
HinP1I	GCGC	2 cut(s)	27, 439
HinfI	GANTC	2 cut(s)	75, 525
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	267, 295, 303
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	4 cut(s)	151, 232, 335, 474
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	111, 459, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 494
HpyF3I	CTNAG	3 cut(s)	396, 489, 530
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	27
HspAI	GCGC	2 cut(s)	27, 439
KasI	GGCGCC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	413
LpnPI	CCDG	4 cut(s)	312, 405, 495, 507
LweI	GCATC	3 cut(s)	48, 303, 408
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	463, 562
MboII	GAAGA	3 cut(s)	70, 139, 344
MfeI	CAATTG	1 cut(s)	183
MhlI	GDGCHC	3 cut(s)	67, 113, 246
MluCI	AATT	3 cut(s)	183, 205, 268
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	69, 534
MnlI	CCTC	5 cut(s)	33, 36, 103, 207, 301
MroXI	GAANNNNTTC	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	35, 494
NarI	GGCGCC	1 cut(s)	27
NdeI	CATATG	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	2 cut(s)	463, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	161
Pfl23II	CGTACG	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	6, 9, 16, 91
PleI	GAGTC	2 cut(s)	69, 533
PluTI	GGCGCC	1 cut(s)	30
PpsI	GAGTC	2 cut(s)	69, 533
PspLI	CGTACG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	512
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	33, 536
RsaNI	GTAC	2 cut(s)	32, 535
SatI	GCNGC	4 cut(s)	5, 8, 15, 90
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	2 cut(s)	69, 534
SduI	GDGCHC	3 cut(s)	67, 113, 246
SfaNI	GCATC	3 cut(s)	48, 303, 408
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	512
Sse9I	AATT	3 cut(s)	183, 205, 268
SsiI	CCGC	6 cut(s)	4, 7, 10, 14, 61, 89
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	120
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	136, 339
TasI	AATT	3 cut(s)	183, 205, 268
TauI	GCSGC	4 cut(s)	7, 10, 17, 92
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	463, 562
Tsp45I	GTSAC	2 cut(s)	463, 562
TspRI	CASTG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	512
XapI	RAATTY	2 cut(s)	205, 268
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.