Rh4AG050200

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009724
Physical Location & Seq
Forward (+)
10518279 .. 10523919
5641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG050200.1

Sequence Viewer

Length: 600 bp
ATGGGGTTAGGCACCTGGAGGATGAATTGGAAGCACATGGGTGGGTACCGGGACGAGCTACCCGAGTGGGTCACCGAGATTAATCGCAAATTGGTATGTGGTATGCAAGTCTCAGGGAATGCTGCTGAGTGGGCGTACAGGAAGATCGAAGCAATAGTCGCAGCAGATGAAGGTGAAGAAACAGAGGATGAAAGCAATTGCCAGTCATTGGAAGCAATTTTTGCCTTGGAAGGATCGGGACATCACATCAAAGAGATCAACTTCCTTAGTTTGAGGCGGTTGAAACTTGAAGGTCTACCAAGCTTCACTGGAATGAGCAAAAGTACTTGCAAGGGGATGGAAAGGCAACTGGAAGTCAGCAGTCTCCATCGCAATAGTTTGACCATTGAACATTCACTTTTCTCTGACCCCAAGGTTGTCTTTCCCGTCTTGGAAGACCTGAACATTAGCCGTCTGGGCAACTGGAAAGAGATATGGAATAGCCGACTTTCACCCAACTCCTTCTCTGAATTAAGAACACTCACTGTCGAGGATTGTGACAAACTATTACATCTGGTGCTGGATGTGTTTCTACTTGACAATATTGAAATAACTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

199

Amino Acids

22.71

Weight (kDa)

5.21

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 108 - 185 4.8e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 45
AccB1I GGYRCC 2 cut(s) 11, 45
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 295
AciI CCGC 1 cut(s) 277
AclWI GGATC 1 cut(s) 241
AfaI GTAC 3 cut(s) 47, 137, 325
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 283, 290, 389, 587
AjnI CCWGG 1 cut(s) 14
AleI CACNNNNGTG 1 cut(s) 39
AluBI AGCT 2 cut(s) 58, 303
AluI AGCT 2 cut(s) 58, 303
Alw26I GTCTC 2 cut(s) 115, 368
AlwI GGATC 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 62
ApeKI GCWGC 2 cut(s) 122, 161
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AseI ATTAAT 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 64, 185, 483
AvaI CYCGRG 1 cut(s) 62
BanI GGYRCC 2 cut(s) 11, 45
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 2 cut(s) 109, 173
BccI CCATC 2 cut(s) 331, 375
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 16
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 115, 368
BglI GCCNNNNNGGC 1 cut(s) 456
BisI GCNGC 2 cut(s) 123, 162
BlsI GCNGC 2 cut(s) 124, 163
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 2 cut(s) 16, 50
BmeT110I CYCGRG 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 13, 47
BmrFI CCNGG 2 cut(s) 16, 50
BpiI GAAGAC 1 cut(s) 441
BpmI CTGGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 225, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 4 cut(s) 202, 313, 354, 467
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 2 cut(s) 225, 411
BseGI GGATG 4 cut(s) 27, 193, 342, 568
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 117, 126
BseNI ACTGG 4 cut(s) 202, 313, 354, 467
BseXI GCAGC 2 cut(s) 109, 173
BshNI GGYRCC 2 cut(s) 11, 45
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 65, 252
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 115, 368
BsmFI GGGAC 2 cut(s) 65, 252
BsmI GAATGC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 3 cut(s) 144, 233, 255
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 118, 125
BspLI GGNNCC 2 cut(s) 13, 47
BspPI GGATC 1 cut(s) 241
BspT107I GGYRCC 2 cut(s) 11, 45
BsrI ACTGG 4 cut(s) 202, 313, 354, 467
BssECI CCNNGG 2 cut(s) 225, 411
BssMI GATC 3 cut(s) 144, 233, 255
BssT1I CCWWGG 2 cut(s) 225, 411
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 526
BstAPI GCANNNNNTGC 1 cut(s) 221
BstDEI CTNAG 4 cut(s) 112, 126, 266, 594
BstEII GGTNACC 1 cut(s) 70
BstF5I GGATG 4 cut(s) 27, 193, 342, 568
BstKTI GATC 3 cut(s) 147, 236, 258
BstMAI GTCTC 2 cut(s) 115, 368
BstMBI GATC 3 cut(s) 144, 233, 255
BstMWI GCNNNNNNNGC 4 cut(s) 131, 158, 221, 456
BstNI CCWGG 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 14, 48
BstV1I GCAGC 2 cut(s) 109, 173
BstV2I GAAGAC 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 4 cut(s) 27, 193, 342, 568
BtsIMutI CAGTG 2 cut(s) 306, 522
Csp6I GTAC 3 cut(s) 46, 136, 324
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 58, 303, 450, 483
CviKI_1 RGCY 4 cut(s) 58, 303, 450, 483
CviQI GTAC 3 cut(s) 46, 136, 324
DdeI CTNAG 4 cut(s) 112, 126, 266, 594
DpnI GATC 3 cut(s) 146, 235, 257
DpnII GATC 3 cut(s) 144, 233, 255
Eco130I CCWWGG 2 cut(s) 225, 411
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 70
EcoO65I GGTNACC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 2 cut(s) 225, 411
ErhI CCWWGG 2 cut(s) 225, 411
FaeI CATG 1 cut(s) 40
FaiI YATR 4 cut(s) 38, 97, 104, 475
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 2 cut(s) 65, 252
FatI CATG 1 cut(s) 36
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 123, 162
FokI GGATG 4 cut(s) 34, 200, 349, 575
Fsp4HI GCNGC 2 cut(s) 123, 162
GluI GCNGC 2 cut(s) 123, 162
GsuI CTGGAG 1 cut(s) 37
HapII CCGG 1 cut(s) 49
Hin1II CATG 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 301
HpaII CCGG 1 cut(s) 49
HphI GGTGA 3 cut(s) 64, 185, 483
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 2 cut(s) 406, 508
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 1 cut(s) 296
HpyAV CCTTC 4 cut(s) 164, 224, 284, 511
HpyCH4III ACNGT 1 cut(s) 526
HpyCH4V TGCA 2 cut(s) 106, 330
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 158, 221, 456
HpyF3I CTNAG 4 cut(s) 112, 126, 266, 594
Hsp92II CATG 1 cut(s) 40
KpnI GGTACC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 144, 233, 255
Lsp1109I GCAGC 2 cut(s) 109, 173
MaeIII GTNAC 2 cut(s) 70, 536
MalI GATC 3 cut(s) 146, 235, 257
MboI GATC 3 cut(s) 144, 233, 255
MboII GAAGA 3 cut(s) 154, 188, 446
MfeI CAATTG 1 cut(s) 196
MluCI AATT 5 cut(s) 25, 89, 196, 216, 509
MnlI CCTC 4 cut(s) 12, 178, 267, 523
MseI TTAA 2 cut(s) 81, 512
MslI CAYNNNNRTG 2 cut(s) 39, 311
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 2 cut(s) 16, 50
MunI CAATTG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 131, 158, 221, 456
NciI CCSGG 1 cut(s) 50
NdeII GATC 3 cut(s) 144, 233, 255
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 13, 47
NmuCI GTSAC 2 cut(s) 70, 536
OliI CACNNNNGTG 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 2 cut(s) 124, 163
PshBI ATTAAT 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 14
PspEI GGTNACC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 13, 47
RsaI GTAC 3 cut(s) 47, 137, 325
RsaNI GTAC 3 cut(s) 46, 136, 324
RseI CAYNNNNRTG 2 cut(s) 39, 311
SaqAI TTAA 2 cut(s) 81, 512
SatI GCNGC 2 cut(s) 123, 162
Sau3AI GATC 3 cut(s) 144, 233, 255
ScaI AGTACT 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 16, 50
SetI ASST 7 cut(s) 17, 60, 175, 295, 305, 417, 441
SmiMI CAYNNNNRTG 2 cut(s) 39, 311
Sse9I AATT 5 cut(s) 25, 89, 196, 216, 509
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 583
StyD4I CCNGG 2 cut(s) 14, 48
StyI CCWWGG 2 cut(s) 225, 411
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 2 cut(s) 147, 528
TasI AATT 5 cut(s) 25, 89, 196, 216, 509
TatI WGTACW 1 cut(s) 323
Tru1I TTAA 2 cut(s) 81, 512
Tru9I TTAA 2 cut(s) 81, 512
TscAI CASTG 2 cut(s) 313, 529
TseFI GTSAC 2 cut(s) 70, 536
TseI GCWGC 2 cut(s) 122, 161
Tsp45I GTSAC 2 cut(s) 70, 536
TspDTI ATGAA 3 cut(s) 38, 183, 204
TspRI CASTG 2 cut(s) 313, 529
Van91I CCANNNNNTGG 1 cut(s) 208
VspI ATTAAT 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 295
ZrmI AGTACT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.