Rroxscaffold_5G00353030

187-kDa microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
30471720 .. 30473706
1987 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00353030.1

Sequence Viewer

Length: 333 bp
ATGGCTGCTACGTTGAGAAAGCTTGATGATTTAGTTGGGTTTTGCTGCAGGGGACAAGTCGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTCGCCATAAGAATTTAGTGAGGTTGCTTGGCTACGTGTCGAAGGTGCTCACGGTGTATGTTGGTCTTCGGTTCTTTTCTTCAGCAGTGGGAGATAATAAGACCTTTGAACCATTACCTGCTCAGCGTTCTTGCTCCTACAAGATGCGATTAGAGAACGTCGGGCGCTGTCTAAAATGTGAGTGCATTGTGACCGATGTGTTTGGAAGGTCAGCTGAGCCTCGCATATGCTGA

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

9.23

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 226
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 73, 80, 209
AluBI AGCT 2 cut(s) 22, 314
AluI AGCT 2 cut(s) 22, 314
Alw21I GWGCWC 1 cut(s) 150
ApeKI GCWGC 2 cut(s) 5, 45
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 268
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 2 cut(s) 6, 46
BlpI GCTNAGC 2 cut(s) 222, 315
BlsI GCNGC 2 cut(s) 7, 47
BmsI GCATC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 158
Bpu1102I GCTNAGC 2 cut(s) 222, 315
BsaAI YACGTR 1 cut(s) 136
BseMII CTCAG 2 cut(s) 236, 306
BseXI GCAGC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1720I GCTNAGC 2 cut(s) 222, 315
BspCNI CTCAG 2 cut(s) 235, 307
BspMAI CTGCAG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 136
BstDEI CTNAG 2 cut(s) 222, 315
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 158
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 226
CfoI GCGC 1 cut(s) 267
CviJI RGCY 5 cut(s) 5, 22, 132, 314, 319
CviKI_1 RGCY 5 cut(s) 5, 22, 132, 314, 319
DdeI CTNAG 2 cut(s) 222, 315
Eco57I CTGAAG 1 cut(s) 165
FaiI YATR 4 cut(s) 108, 159, 326, 328
FaqI GGGAC 1 cut(s) 66
FauNDI CATATG 1 cut(s) 326
Fnu4HI GCNGC 2 cut(s) 6, 46
Fsp4HI GCNGC 2 cut(s) 6, 46
GlaI GCGC 1 cut(s) 266
GluI GCNGC 2 cut(s) 6, 46
HaeII RGCGCY 1 cut(s) 268
HhaI GCGC 1 cut(s) 267
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 58, 136, 300
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 3 cut(s) 11, 135, 258
HpyCH4V TGCA 2 cut(s) 48, 285
HpyF3I CTNAG 2 cut(s) 222, 315
HpySE526I ACGT 3 cut(s) 11, 135, 258
HspAI GCGC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 2 cut(s) 34, 231
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 1 cut(s) 234
MaeII ACGT 3 cut(s) 11, 135, 258
MaeIII GTNAC 1 cut(s) 289
MboII GAAGA 2 cut(s) 158, 171
MfeI CAATTG 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 90, 112
MnlI CCTC 2 cut(s) 114, 330
MroXI GAANNNNTTC 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 314
MunI CAATTG 1 cut(s) 90
NdeI CATATG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 68
PkrI GCNGC 2 cut(s) 7, 47
Ppu21I YACGTR 1 cut(s) 136
PstI CTGCAG 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 314
SatI GCNGC 2 cut(s) 6, 46
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 1 cut(s) 46
Sse9I AATT 2 cut(s) 90, 112
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 3 cut(s) 14, 138, 261
TaqI TCGA 2 cut(s) 60, 140
TaqII GACCGA 1 cut(s) 308
TasI AATT 2 cut(s) 90, 112
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 5, 45
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 1 cut(s) 192
XapI RAATTY 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.