Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000066.1

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

53581 .. 55480

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000066.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atggctgctacgttgagaaagcttgatgatttagttgggttttgctgcaggggacaagctgagaaggagttcaaggttgaagtggaagcaattggtcgtgttcgccataagaatttagtgaggttgcttagctactgtgctgaaggtgctcacaggatgcttgtgtatgagtatgttgaaagcggaaacctggaacaatggcttcatggagatgtcgggcctctcagccctctgacatgggagaatcgcatgaatataatacttgggacagtgaaagggtacattttggaggggaaagaattagagttttacatgaagaaactccagaggaagaagggaaaggcagctggtgctgctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

120

Amino Acids

13.56

Weight (kDa)

9.01

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	73, 80, 179
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	22, 59, 132, 347
AluI	AGCT	4 cut(s)	22, 59, 132, 347
Alw21I	GWGCWC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	5 cut(s)	5, 45, 344, 353, 356
ApoI	RAATTY	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	32, 340, 343, 356
BciT130I	CCWGG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	5 cut(s)	6, 46, 345, 354, 357
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	7, 47, 346, 355, 358
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	308
Bpu1102I	GCTNAGC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	2 cut(s)	51, 238
BseXI	GCAGC	4 cut(s)	32, 340, 343, 356
BshFI	GGCC	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	66, 280
BsmFI	GGGAC	2 cut(s)	66, 280
BsnI	GGCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	183
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	52, 237
BspMAI	CTGCAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	137, 271
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	60, 128, 224
BstF5I	GGATG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 350, 353
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	4 cut(s)	32, 340, 343, 356
BsuRI	GGCC	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	206, 237, 250, 313
CviJI	RGCY	8 cut(s)	5, 22, 59, 132, 202, 220, 228, 347
CviKI_1	RGCY	8 cut(s)	5, 22, 59, 132, 202, 220, 228, 347
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	60, 128, 224
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	209, 240, 253, 316
FaiI	YATR	9 cut(s)	108, 168, 174, 207, 238, 251, 257, 314, 361
FaqI	GGGAC	2 cut(s)	66, 280
FatI	CATG	4 cut(s)	205, 236, 249, 312
Fnu4HI	GCNGC	5 cut(s)	6, 46, 345, 354, 357
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	6, 46, 345, 354, 357
GluI	GCNGC	5 cut(s)	6, 46, 345, 354, 357
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	209, 240, 253, 316
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	325
HpyAV	CCTTC	3 cut(s)	58, 137, 328
HpyCH4III	ACNGT	2 cut(s)	137, 271
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	2 cut(s)	48, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 350, 353
HpyF3I	CTNAG	3 cut(s)	60, 128, 224
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	209, 240, 253, 316
LpnPI	CCDG	6 cut(s)	34, 139, 176, 203, 333, 338
Lsp1109I	GCAGC	4 cut(s)	32, 340, 343, 356
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	1 cut(s)	11
MboII	GAAGA	2 cut(s)	328, 343
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	90, 112, 299
MnlI	CCTC	5 cut(s)	114, 231, 240, 283, 321
MroXI	GAANNNNTTC	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	146, 350, 353
NlaIII	CATG	4 cut(s)	209, 240, 253, 316
PdmI	GAANNNNTTC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	5 cut(s)	7, 47, 346, 355, 358
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	210
SatI	GCNGC	5 cut(s)	6, 46, 345, 354, 357
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	9 cut(s)	14, 24, 61, 78, 125, 134, 148, 192, 349
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	46
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	90, 112, 299
SsiI	CCGC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	137, 271
TaiI	ACGT	1 cut(s)	14
TasI	AATT	3 cut(s)	90, 112, 299
TfiI	GAWTC	1 cut(s)	244
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	5 cut(s)	5, 45, 344, 353, 356
TspDTI	ATGAA	3 cut(s)	194, 266, 329
TspRI	CASTG	1 cut(s)	276
XapI	RAATTY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.