RchiOBHm_Chr6g0283351

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
46564613 .. 46567930
3318 bp
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UTR
Exon/CDS
Intron
PRQ25405

Sequence Viewer

Length: 390 bp
ATGGTTGCAGTCAAGAATTTGCTCAATAACAAGGGACAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTTGCCATAAGAATTTAGTGAGGTTGATTGGCTACCGTGCTGAAGGTGCTCACAGGATGCTTGTGTATGAGTATGTTGACAACGGAAACCTGGAACAATGGCTTCATGGAGATGTCGGGCCTCTCAGCCCTCTGACATGGGAGAATCGCATGAATATAATACTTGGGACAGCGAAAGGGTTGACATACTTGCATGAGGGACTATATGCAAAGTTTCAAACCCTCTATATTTGTCAGAGGTCTTGTCAAGCTCAAAAGTCTATGTATAATATCTTGCGAGAAGATCGAAGCAATAGTCGCAGCAGATGA

Protein Analysis

129

Amino Acids

14.87

Weight (kDa)

9.22

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 93 1.5e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 93 5.8e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 16, 94
AcuI CTGAAG 1 cut(s) 144
AgsI TTSAA 3 cut(s) 55, 62, 299
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 41, 332
AluI AGCT 2 cut(s) 41, 332
Alw21I GWGCWC 1 cut(s) 133
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 381
ApoI RAATTY 2 cut(s) 16, 94
ArsI GACNNNNNNTTYG 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 173
BisI GCNGC 1 cut(s) 382
BlsI GCNGC 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 129
BseBI CCWGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 33, 220
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 133
BslFI GGGAC 3 cut(s) 48, 262, 294
BsmFI GGGAC 3 cut(s) 48, 262, 294
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 364
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 34, 219
BssMI GATC 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 119
BstDEI CTNAG 2 cut(s) 42, 206
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 128, 378
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 4 cut(s) 188, 219, 232, 275
CviJI RGCY 6 cut(s) 41, 114, 184, 202, 210, 332
CviKI_1 RGCY 6 cut(s) 41, 114, 184, 202, 210, 332
DdeI CTNAG 2 cut(s) 42, 206
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 191, 222, 235, 278
FaqI GGGAC 3 cut(s) 48, 262, 294
FatI CATG 4 cut(s) 187, 218, 231, 274
Fnu4HI GCNGC 1 cut(s) 382
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 382
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 4 cut(s) 191, 222, 235, 278
HincII GTYRAC 2 cut(s) 160, 264
HindII GTYRAC 2 cut(s) 160, 264
HinfI GANTC 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 160, 264
Hpy188I TCNGA 2 cut(s) 216, 318
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 160, 264
HpyAV CCTTC 2 cut(s) 40, 119
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 8, 274, 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 378
HpyF3I CTNAG 2 cut(s) 42, 206
Hsp92II CATG 4 cut(s) 191, 222, 235, 278
Kzo9I GATC 1 cut(s) 364
LpnPI CCDG 3 cut(s) 121, 158, 185
LweI GCATC 1 cut(s) 129
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 1 cut(s) 374
MfeI CAATTG 1 cut(s) 72
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 16, 72, 94
MnlI CCTC 6 cut(s) 96, 213, 222, 271, 312, 314
MroXI GAANNNNTTC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 173
MunI CAATTG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 128, 378
NdeII GATC 1 cut(s) 364
NlaIII CATG 4 cut(s) 191, 222, 235, 278
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 192
SatI GCNGC 1 cut(s) 382
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 43, 60, 107, 130, 174, 323, 334
SfaNI GCATC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 3 cut(s) 16, 72, 94
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 16, 72, 94
TfiI GAWTC 1 cut(s) 226
TseI GCWGC 1 cut(s) 381
TspDTI ATGAA 2 cut(s) 176, 248
TspGWI ACGGA 1 cut(s) 180
XapI RAATTY 2 cut(s) 16, 94
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.