Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006634.1

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

28992 .. 38099

Gene Structure 9108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006634.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggctgacaccggtgacaagaagcctaatgccaatgccaaggtgaaagtcaagcatggaggtggtggtggtggtggtggtggtgagtttgccttgcttttccgtttctcagttttcaggggacaagttgagaaggagttcaaggttgaagtggaagcaattggtcgtgttcgccataagaatttagtgaggttgcttggctactgtgctgaaggtgctcacaggatgcttgtgtatgagtatgttgacaacggaaacctggaacaatggcttcatggagatgtcgggcctctcagccctctgacatgggagaattgcatgaatataatgcttgggacagcgaaaggtagtgctgggtcctccaaggccagcctccgatttccggttggctgtatagctcgcttcctcaaatccgacaagtatgccttggatatctccgctatcctcgaatatctcactgctagttatttgctcttgatttgcgagactcagagtgatcatggatttccttatatgttgaagtttgatatccagcacgagtgcgcttctcaaggccgctatgttgtcagagatgatatggatatatatagttctccaattcgttcaatttcccaattcgtggccaggccggaacgccaccagaatgcctccacaggcggtggcacaccgcagcaggccaaaactcaatatttcacaaaacttccaagatcaaagatgttcatcacagcatgcttaaccattttcataacaagcacgaagaggttgctgcaagcttctcaagcctggtttgaagcttcgtcgacgtcggagattggagaaccgatagggtccgatttcctcaaacttcgccgccttctagcaccgccaccaccgagaatcgccgctagaccagagggaggagcggatgggcagagacgagccgatctggaaagttttggcaccggagattgccggaaaagtagggtcgggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

323

Amino Acids

35.51

Weight (kDa)

9.18

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	806
AccB1I	GGYRCC	1 cut(s)	938
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	902
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	8 cut(s)	438, 556, 657, 668, 850, 863, 882, 902
AcoI	YGGCCR	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	803
AfiI	CCNNNNNNNGG	3 cut(s)	382, 619, 896
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	142, 149, 520, 606, 791
AjnI	CCWGG	3 cut(s)	258, 623, 782
AluBI	AGCT	3 cut(s)	398, 773, 794
AluI	AGCT	3 cut(s)	398, 773, 794
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	479, 907
AoxI	GGCC	6 cut(s)	287, 366, 553, 621, 626, 675
ApeKI	GCWGC	2 cut(s)	670, 766
ApoI	RAATTY	1 cut(s)	181
AsiGI	ACCGGT	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	545
AspS9I	GGNCC	3 cut(s)	287, 357, 828
AsuHPI	GGTGA	3 cut(s)	26, 55, 95
AvaII	GGWCC	2 cut(s)	357, 828
BalI	TGGCCA	1 cut(s)	623
BanI	GGYRCC	1 cut(s)	938
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	682, 753
BccI	CCATC	1 cut(s)	899
BcgI	CGANNNNNNTGC	4 cut(s)	404, 438, 745, 779
BciT130I	CCWGG	3 cut(s)	260, 625, 784
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	479, 907
BfaI	CTAG	3 cut(s)	462, 857, 885
BisI	GCNGC	5 cut(s)	556, 671, 767, 850, 882
BlsI	GCNGC	5 cut(s)	557, 672, 768, 851, 883
Bme1390I	CCNGG	3 cut(s)	260, 625, 784
Bme18I	GGWCC	2 cut(s)	357, 828
BmgT120I	GGNCC	3 cut(s)	287, 357, 828
BmiI	GGNNCC	3 cut(s)	358, 829, 940
BmrFI	CCNGG	3 cut(s)	260, 625, 784
BmsI	GCATC	1 cut(s)	216
BpuEI	CTTGAG	2 cut(s)	534, 762
BsaBI	GATNNNNATC	1 cut(s)	719
BsaHI	GRCGYC	1 cut(s)	803
BsaJI	CCNNGG	3 cut(s)	39, 363, 426
BsaWI	WCCGGW	3 cut(s)	11, 382, 941
Bsc4I	CCNNNNNNNGG	3 cut(s)	382, 619, 896
Bse118I	RCCGGY	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	719
BseBI	CCWGG	3 cut(s)	260, 625, 784
BseDI	CCNNGG	3 cut(s)	39, 363, 426
BseGI	GGATG	2 cut(s)	231, 910
BseJI	GATNNNNATC	1 cut(s)	719
BseLI	CCNNNNNNNGG	3 cut(s)	382, 619, 896
BseMII	CTCAG	3 cut(s)	123, 307, 503
BseRI	GAGGAG	1 cut(s)	912
BseXI	GCAGC	2 cut(s)	682, 753
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	6 cut(s)	289, 368, 555, 623, 628, 677
BshNI	GGYRCC	1 cut(s)	938
BshTI	ACCGGT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	5 cut(s)	12, 383, 629, 942, 952
BslFI	GGGAC	2 cut(s)	135, 349
BslI	CCNNNNNNNGG	3 cut(s)	382, 619, 896
BsmAI	GTCTC	2 cut(s)	479, 907
BsmBI	CGTCTC	1 cut(s)	907
BsmFI	GGGAC	2 cut(s)	135, 349
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	6 cut(s)	289, 368, 555, 623, 628, 677
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	496, 707, 922
BspACI	CCGC	8 cut(s)	438, 556, 657, 668, 850, 863, 882, 902
BspANI	GGCC	6 cut(s)	289, 368, 555, 623, 628, 677
BspCNI	CTCAG	3 cut(s)	122, 306, 502
BspLI	GGNNCC	3 cut(s)	358, 829, 940
BspT107I	GGYRCC	1 cut(s)	938
BsrBI	CCGCTC	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	39, 363, 426
BssMI	GATC	3 cut(s)	496, 707, 922
BssNI	GRCGYC	1 cut(s)	803
BssSI	CACGAG	1 cut(s)	536
BssT1I	CCWWGG	3 cut(s)	39, 363, 426
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	260, 625, 784
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	752
BstACI	GRCGYC	1 cut(s)	803
BstC8I	GCNNGC	5 cut(s)	370, 400, 675, 730, 771
BstDEI	CTNAG	3 cut(s)	109, 293, 489
BstF5I	GGATG	2 cut(s)	231, 910
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	3 cut(s)	499, 710, 925
BstMAI	GTCTC	2 cut(s)	479, 907
BstMBI	GATC	3 cut(s)	496, 707, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 779
BstNI	CCWGG	3 cut(s)	260, 625, 784
BstNSI	RCATGY	1 cut(s)	732
BstSCI	CCNGG	3 cut(s)	258, 623, 782
BstV1I	GCAGC	2 cut(s)	682, 753
BsuRI	GGCC	6 cut(s)	289, 368, 555, 623, 628, 677
BtsCI	GGATG	2 cut(s)	231, 910
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	5 cut(s)	370, 400, 675, 730, 771
CfoI	GCGC	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	287, 357, 828
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	6 cut(s)	56, 275, 306, 319, 500, 729
DdeI	CTNAG	3 cut(s)	109, 293, 489
DpnI	GATC	3 cut(s)	498, 709, 924
DpnII	GATC	3 cut(s)	496, 707, 922
EaeI	YGGCCR	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	752
EarI	CTCTTC	1 cut(s)	752
Eco130I	CCWWGG	3 cut(s)	39, 363, 426
Eco32I	GATATC	2 cut(s)	433, 529
Eco47I	GGWCC	2 cut(s)	357, 828
Eco57I	CTGAAG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	3 cut(s)	258, 623, 782
EcoRV	GATATC	2 cut(s)	433, 529
EcoT14I	CCWWGG	3 cut(s)	39, 363, 426
ErhI	CCWWGG	3 cut(s)	39, 363, 426
Esp3I	CGTCTC	1 cut(s)	907
FaeI	CATG	6 cut(s)	59, 278, 309, 322, 503, 732
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	2 cut(s)	135, 349
FatI	CATG	6 cut(s)	55, 274, 305, 318, 499, 728
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	5 cut(s)	556, 671, 767, 850, 882
FokI	GGATG	2 cut(s)	238, 917
Fsp4HI	GCNGC	5 cut(s)	556, 671, 767, 850, 882
FspBI	CTAG	3 cut(s)	462, 857, 885
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	5 cut(s)	556, 671, 767, 850, 882
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	6 cut(s)	289, 368, 555, 623, 628, 677
HapII	CCGG	5 cut(s)	12, 383, 629, 942, 952
HhaI	GCGC	1 cut(s)	545
Hin1I	GRCGYC	1 cut(s)	803
Hin1II	CATG	6 cut(s)	59, 278, 309, 322, 503, 732
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HincII	GTYRAC	2 cut(s)	247, 801
HindII	GTYRAC	2 cut(s)	247, 801
HindIII	AAGCTT	2 cut(s)	771, 792
HinfI	GANTC	2 cut(s)	487, 876
HpaII	CCGG	5 cut(s)	12, 383, 629, 942, 952
HphI	GGTGA	3 cut(s)	26, 55, 95
Hpy166II	GTNNAC	2 cut(s)	247, 801
Hpy188I	TCNGA	7 cut(s)	303, 377, 415, 492, 569, 808, 832
Hpy188III	TCNNGA	2 cut(s)	475, 926
Hpy8I	GTNNAC	2 cut(s)	247, 801
Hpy99I	CGWCG	3 cut(s)	802, 805, 808
HpyAV	CCTTC	3 cut(s)	127, 206, 863
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	2 cut(s)	318, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 779
HpyF3I	CTNAG	3 cut(s)	109, 293, 489
HpySE526I	ACGT	1 cut(s)	803
Hsp92I	GRCGYC	1 cut(s)	803
Hsp92II	CATG	6 cut(s)	59, 278, 309, 322, 503, 732
HspAI	GCGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	496, 707, 922
LmnI	GCTCC	1 cut(s)	899
Lsp1109I	GCAGC	2 cut(s)	682, 753
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	3 cut(s)	462, 857, 885
MaeII	ACGT	1 cut(s)	803
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	498, 709, 924
MbiI	CCGCTC	1 cut(s)	902
MboI	GATC	3 cut(s)	496, 707, 922
MboII	GAAGA	1 cut(s)	769
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	6 cut(s)	159, 181, 313, 597, 606, 614
MluNI	TGGCCA	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	2 cut(s)	438, 786
Mox20I	TGGCCA	1 cut(s)	623
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	1 cut(s)	734
MslI	CAYNNNNRTG	3 cut(s)	60, 279, 642
Msp20I	TGGCCA	1 cut(s)	623
MspI	CCGG	5 cut(s)	12, 383, 629, 942, 952
MspR9I	CCNGG	3 cut(s)	260, 625, 784
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	3 cut(s)	260, 625, 784
MwoI	GCNNNNNNNGC	2 cut(s)	215, 779
NdeII	GATC	3 cut(s)	496, 707, 922
NlaIII	CATG	6 cut(s)	59, 278, 309, 322, 503, 732
NlaIV	GGNNCC	3 cut(s)	358, 829, 940
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	732
PaeI	GCATGC	1 cut(s)	732
PctI	GAATGC	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	876
PflMI	CCANNNNNTGG	1 cut(s)	619
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	5 cut(s)	557, 672, 768, 851, 883
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	3 cut(s)	258, 623, 782
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	258, 623, 782
PspN4I	GGNNCC	3 cut(s)	358, 829, 940
PspPI	GGNCC	3 cut(s)	287, 357, 828
PspPPI	RGGWCCY	1 cut(s)	357
RseI	CAYNNNNRTG	3 cut(s)	60, 279, 642
SalI	GTCGAC	1 cut(s)	799
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	5 cut(s)	556, 671, 767, 850, 882
Sau3AI	GATC	3 cut(s)	496, 707, 922
Sau96I	GGNCC	3 cut(s)	287, 357, 828
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	3 cut(s)	260, 625, 784
SduI	GDGCHC	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	216
SgrAI	CRCCGGYG	1 cut(s)	11
SgrDI	CGTCGACG	1 cut(s)	799
SinI	GGWCC	2 cut(s)	357, 828
SmiMI	CAYNNNNRTG	3 cut(s)	60, 279, 642
SmlI	CTYRAG	2 cut(s)	549, 777
SmoI	CTYRAG	2 cut(s)	549, 777
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	6 cut(s)	159, 181, 313, 597, 606, 614
SsiI	CCGC	8 cut(s)	438, 556, 657, 668, 850, 863, 882, 902
SspI	AATATT	1 cut(s)	689
SspMI	CTAG	3 cut(s)	462, 857, 885
StyD4I	CCNGG	3 cut(s)	258, 623, 782
StyI	CCWWGG	3 cut(s)	39, 363, 426
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	806
TaqI	TCGA	2 cut(s)	447, 800
TasI	AATT	6 cut(s)	159, 181, 313, 597, 606, 614
TauI	GCSGC	3 cut(s)	558, 852, 884
TfiI	GAWTC	1 cut(s)	876
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	670, 766
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	263, 335, 709, 733
TspGWI	ACGGA	2 cut(s)	92, 267
TspRI	CASTG	1 cut(s)	463
Van91I	CCANNNNNTGG	1 cut(s)	619
VpaK11BI	GGWCC	2 cut(s)	357, 828
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	3 cut(s)	462, 857, 885
ZraI	GACGTC	1 cut(s)	804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.