Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009724

Physical Location & Seq

Genomic Coordinates Reverse (-)

45308142 .. 45309994

Gene Structure 1853 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCAATATGGGAGACCATGCAAGCATTCTTCGATGCAGAAATAAAGAAAATGAAGATTAAAAATTGCTACTTTCCTTTGTTCGTCTCCCCTGCTGTTCTGGAAAAAGAGAAGGATCATATAGAGGGTGGATATGGGATTGTGTACAGAGGTGTTTTGGAGGACAACTCAATGGTTGCAGTCAAGAATTTGCTCAATAACAAGGGACAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCAATTGGTCGTGTTTGCCATAAGAATTTAGTGAGGTTGATTGGCTACCGTGCTGAAGGTGCTCACAGGTCTACCCAGCTTCACTGGAATGAGCAAAAGTACTTGCAAGGGGATGGAAAGGCAACTGGAAGTCAGCAGTCTCCATCGCAATATTTGGATGAAAGGAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

15.71

Weight (kDa)

8.49

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	42 - 98	9.6e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009724)

Species	Orthologous Gene IDs
malus_domestica	MD08G1148500.v1.1
pyrus_communis	pycom07g12970
rosa_chinensis	RchiOBHm_Chr1g0313171 RchiOBHm_Chr5g0080771 RchiOBHm_Chr6g0261551 RchiOBHm_Chr6g0261561 RchiOBHm_Chr6g0283351
rosa_multiflora	Rmu_sc0006634.1_g000006 Rmu_ssc0000066.1_g000014
rosa_roxburghii	Rroxscaffold_4G00321550 Rroxscaffold_5G00353030 Rroxscaffold_7G00162120
rosa_samantha	Rh1DG264100 Rh4AG050100 Rh4AG050200 Rh6DG261500
rosa_wichuraiana	Rw4G014170 Rw4G015360 Rw5G032300 Rw5G042170 Rw5G042180 Rw7G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	311
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	187, 265, 408
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	2 cut(s)	146, 341
AgsI	TTSAA	2 cut(s)	226, 233
AluBI	AGCT	2 cut(s)	212, 319
AluI	AGCT	2 cut(s)	212, 319
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	3 cut(s)	8, 91, 384
AlwI	GGATC	1 cut(s)	123
ApoI	RAATTY	3 cut(s)	187, 265, 408
Asp700I	GAANNNNTTC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	347, 391
BcoDI	GTCTC	3 cut(s)	8, 91, 384
BmcAI	AGTACT	1 cut(s)	341
BmsI	GCATC	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaI	GGTCTC	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	329, 370
BseGI	GGATG	2 cut(s)	358, 403
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	329, 370
BseYI	CCCAGC	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	3 cut(s)	8, 91, 384
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	26
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	329, 370
BssMI	GATC	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	290
BstAUI	TGTACA	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	358, 403
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	3 cut(s)	8, 91, 384
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	358, 403
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	145, 340
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	3 cut(s)	212, 285, 319
CviKI_1	RGCY	3 cut(s)	212, 285, 319
CviQI	GTAC	2 cut(s)	145, 340
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	22
FaiI	YATR	6 cut(s)	10, 20, 120, 122, 135, 261
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	311
FokI	GGATG	2 cut(s)	365, 410
GsaI	CCCAGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	145, 312
Hpy188III	TCNNGA	2 cut(s)	101, 184
Hpy8I	GTNNAC	2 cut(s)	145, 312
HpyAV	CCTTC	3 cut(s)	106, 211, 290
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	4 cut(s)	22, 38, 179, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	6 cut(s)	86, 105, 292, 310, 329, 351
LweI	GCATC	1 cut(s)	25
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	22, 67
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	5 cut(s)	64, 187, 243, 265, 408
MnlI	CCTC	4 cut(s)	118, 143, 154, 267
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	22
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	315
RsaI	GTAC	2 cut(s)	146, 341
RsaNI	GTAC	2 cut(s)	145, 340
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	7 cut(s)	154, 214, 231, 278, 301, 311, 321
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	64, 187, 243, 265, 408
SspI	AATATT	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	64, 187, 243, 265, 408
TatI	WGTACW	2 cut(s)	144, 339
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	329
TspDTI	ATGAA	2 cut(s)	68, 414
TspRI	CASTG	1 cut(s)	329
XapI	RAATTY	3 cut(s)	187, 265, 408
XmiI	GTMKAC	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.