pycom07g18830

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013413
Physical Location & Seq
Forward (+)
21235669 .. 21237992
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 888 bp
ATGTTAATTACAAAAAAAATTAATTTAATTGATCTCTCTAACATTAATCGTGGTACGGTAAAAACTTTGACATCTGCTGAATCACACGCTACACGTGCGCGTGGGAATTTCATTATCATCATCGAGTCATCGTTATATAAAGACGCCATCTTTCCGCGTCGAGTGCATCCTTCATCAGACGCCGATGGCCACCGAAGCTCCCGGCTATACCACCCGATTTATCGTCTCCCTTTCAACCCGACGACCCGATTGCCCCTCTCCGTTTCCGAAGCTCCTTTATCGCCTCGAAACGGAACATTGAAGATTGCAACTGCTGCAGCCATGAGTGATGCAATTGATTTATCCGGGGATGGCGGTGTTCTCAAGAAAATTGTAAGGCGTGCAAAGCCAGATGCAATTGCTCCGACCCAAGACCTTCCGCTCGTTGATGTTCATTATGAAGGCATTCTTGAGGAAACCGGCGAAGTCTTTGACACGACGCACGAAGATAATACAATATTCTCATTTGAGATTGGGAAGGGCAGTGTGATCAAGGCTTGGGATATTGCAGTGAAAACCATGAAGGTTGGGGAGATTGCTAAGATCACTTGCAAGCCAGAATACGCCTATGGAAGTGCTGGTTCTCCACCAGATATCCCACCCGGTGCAACCCTTGTATTTGAAGTGGAGTTAGTTGCTTGCAATCCGCGGAAGGGATTAAGTTTGGGTAGTGCTTCAGAGGAAAGGGCTAGGCTAGAAGAACTGAAGAAACAGAGGGAGTTAGTTGCTGCAAACAAAGAGGAAGAGAAGAAGAAGAGAGAAGAGGCCAAAGCTGCTGCCGCTGCTCGTATTCAAGCAAAGTTAGATGCCAAGAAGGGCGGAGGAAAGGGAAAAGGGAAAGCAAAATAG

Protein Analysis

296

Amino Acids

31.95

Weight (kDa)

9.36

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 141 - 225 2.1e-29 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55520 AT3G55520 AT3G55520
fragaria_vesca FvH4_7g22820
malus_domestica MD01G1136400.v1.1 MD07G1201400.v1.1
prunus_persica Prupe.2G238000_v2.0.a1
pyrus_communis pycom07g18830
rosa_chinensis RchiOBHm_Chr1g0367961
rosa_laevigata RLG00000027253
rosa_multiflora Rmu_co8515997.1_g000001
rosa_roxburghii Rroxscaffold_4G00289050
rosa_rugosa Rorug01G0337800
rosa_samantha Rh1AG344600 Rh1BG306900 Rh1CG322500 Rh1DG339000
rosa_wichuraiana Rw1G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 421
AccII CGCG 3 cut(s) 100, 157, 688
AciI CCGC 7 cut(s) 155, 354, 419, 686, 688, 819, 858
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 1 cut(s) 106
AcuI CTGAAG 2 cut(s) 699, 764
AcvI CACGTG 1 cut(s) 95
AcyI GRCGYC 2 cut(s) 144, 180
AdeI CACNNNGTG 1 cut(s) 644
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 290, 692
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 4 cut(s) 235, 301, 662, 833
AluBI AGCT 3 cut(s) 198, 272, 812
AluI AGCT 3 cut(s) 198, 272, 812
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 2 cut(s) 187, 804
ApeKI GCWGC 6 cut(s) 314, 317, 767, 812, 815, 821
ApoI RAATTY 1 cut(s) 106
AseI ATTAAT 2 cut(s) 21, 45
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 100
AsuC2I CCSGG 3 cut(s) 202, 346, 642
BalI TGGCCA 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 95
BbvI GCAGC 6 cut(s) 301, 329, 754, 799, 802, 808
BccI CCATC 3 cut(s) 155, 179, 344
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BclI TGATCA 1 cut(s) 528
BcnI CCSGG 3 cut(s) 202, 346, 642
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 729, 734
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 7 cut(s) 315, 318, 768, 813, 816, 819, 822
BlsI GCNGC 7 cut(s) 316, 319, 769, 814, 817, 820, 823
Bme1390I CCNGG 3 cut(s) 202, 346, 642
BmrFI CCNGG 3 cut(s) 202, 346, 642
BmsI GCATC 4 cut(s) 175, 319, 382, 835
BpuEI CTTGAG 2 cut(s) 347, 470
BpuMI CCSGG 3 cut(s) 202, 346, 642
BsaAI YACGTR 1 cut(s) 95
BsaHI GRCGYC 2 cut(s) 144, 180
BsaJI CCNNGG 2 cut(s) 345, 686
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 692
Bse118I RCCGGY 1 cut(s) 458
BseDI CCNNGG 2 cut(s) 345, 686
BseGI GGATG 2 cut(s) 166, 355
BseLI CCNNNNNNNGG 2 cut(s) 290, 692
BseXI GCAGC 6 cut(s) 301, 329, 754, 799, 802, 808
Bsh1236I CGCG 3 cut(s) 100, 157, 688
BshFI GGCC 2 cut(s) 189, 806
BsiSI CCGG 4 cut(s) 202, 345, 459, 642
BslI CCNNNNNNNGG 2 cut(s) 290, 692
BsmAI GTCTC 1 cut(s) 230
BsmBI CGTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 2 cut(s) 189, 806
Bsp143I GATC 3 cut(s) 31, 528, 582
BspACI CCGC 7 cut(s) 155, 354, 419, 686, 688, 819, 858
BspANI GGCC 2 cut(s) 189, 806
BspFNI CGCG 3 cut(s) 100, 157, 688
BspMAI CTGCAG 1 cut(s) 319
BsrBI CCGCTC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 345, 686
BssMI GATC 3 cut(s) 31, 528, 582
BssNI GRCGYC 2 cut(s) 144, 180
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 3 cut(s) 777, 788, 795
BstACI GRCGYC 2 cut(s) 144, 180
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 381, 593, 679
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 2 cut(s) 166, 355
BstFNI CGCG 3 cut(s) 100, 157, 688
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 3 cut(s) 34, 531, 585
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 31, 528, 582
BstMWI GCNNNNNNNGC 8 cut(s) 95, 163, 195, 314, 385, 812, 818, 821
BstSCI CCNGG 3 cut(s) 200, 344, 640
BstSFI CTRYAG 1 cut(s) 315
BstUI CGCG 3 cut(s) 100, 157, 688
BstV1I GCAGC 6 cut(s) 301, 329, 754, 799, 802, 808
BsuRI GGCC 2 cut(s) 189, 806
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 2 cut(s) 166, 355
BtsI GCAGTG 2 cut(s) 529, 555
BtsIMutI CAGTG 2 cut(s) 529, 555
Cac8I GCNNGC 3 cut(s) 381, 593, 679
CfoI GCGC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 458
Cfr42I CCGCGG 1 cut(s) 689
CseI GACGC 4 cut(s) 146, 152, 188, 487
Csp6I GTAC 1 cut(s) 54
CviAII CATG 2 cut(s) 322, 559
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 579
DpnI GATC 3 cut(s) 33, 530, 584
DpnII GATC 3 cut(s) 31, 528, 582
DraIII CACNNNGTG 1 cut(s) 644
EaeI YGGCCR 1 cut(s) 187
Eam1104I CTCTTC 3 cut(s) 777, 788, 795
EarI CTCTTC 3 cut(s) 777, 788, 795
EciI GGCGGA 1 cut(s) 873
Eco32I GATATC 1 cut(s) 634
Eco57I CTGAAG 2 cut(s) 699, 764
Eco72I CACGTG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 2 cut(s) 325, 562
FaiI YATR 7 cut(s) 136, 138, 208, 323, 438, 560, 609
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FatI CATG 2 cut(s) 321, 558
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 7 cut(s) 315, 318, 768, 813, 816, 819, 822
FokI GGATG 2 cut(s) 153, 362
Fsp4HI GCNGC 7 cut(s) 315, 318, 768, 813, 816, 819, 822
FspBI CTAG 2 cut(s) 729, 734
GlaI GCGC 1 cut(s) 99
GluI GCNGC 7 cut(s) 315, 318, 768, 813, 816, 819, 822
HaeIII GGCC 2 cut(s) 189, 806
HapII CCGG 4 cut(s) 202, 345, 459, 642
HgaI GACGC 4 cut(s) 146, 152, 188, 487
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 2 cut(s) 144, 180
Hin1II CATG 2 cut(s) 325, 562
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 2 cut(s) 80, 125
HpaII CCGG 4 cut(s) 202, 345, 459, 642
Hpy188I TCNGA 4 cut(s) 178, 268, 405, 718
Hpy188III TCNNGA 2 cut(s) 364, 449
Hpy99I CGWCG 3 cut(s) 162, 244, 481
HpyAV CCTTC 7 cut(s) 180, 425, 434, 511, 556, 685, 847
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 163, 195, 314, 385, 812, 818, 821
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 2 cut(s) 144, 180
Hsp92II CATG 2 cut(s) 325, 562
HspAI GCGC 1 cut(s) 98
Ksp22I TGATCA 1 cut(s) 528
KspI CCGCGG 1 cut(s) 689
Kzo9I GATC 3 cut(s) 31, 528, 582
LmnI GCTCC 3 cut(s) 203, 277, 406
LpnPI CCDG 8 cut(s) 215, 358, 402, 472, 603, 609, 642, 655
Lsp1109I GCAGC 6 cut(s) 301, 329, 754, 799, 802, 808
LweI GCATC 4 cut(s) 175, 319, 382, 835
MaeI CTAG 2 cut(s) 729, 734
MaeII ACGT 1 cut(s) 94
MalI GATC 3 cut(s) 33, 530, 584
MbiI CCGCTC 1 cut(s) 421
MboI GATC 3 cut(s) 31, 528, 582
MboII GAAGA 9 cut(s) 313, 497, 749, 757, 794, 799, 802, 805, 812
MfeI CAATTG 2 cut(s) 333, 396
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 8 cut(s) 6, 18, 22, 27, 106, 333, 369, 396
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 8 cut(s) 266, 294, 445, 712, 747, 772, 796, 854
Mox20I TGGCCA 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 444
MscI TGGCCA 1 cut(s) 189
MseI TTAA 5 cut(s) 5, 21, 26, 45, 698
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 2 cut(s) 688, 821
MspI CCGG 4 cut(s) 202, 345, 459, 642
MspR9I CCNGG 3 cut(s) 202, 346, 642
MunI CAATTG 2 cut(s) 333, 396
Mva1269I GAATGC 1 cut(s) 444
MvnI CGCG 3 cut(s) 100, 157, 688
MwoI GCNNNNNNNGC 8 cut(s) 95, 163, 195, 314, 385, 812, 818, 821
NciI CCSGG 3 cut(s) 202, 346, 642
NdeII GATC 3 cut(s) 31, 528, 582
NlaIII CATG 2 cut(s) 325, 562
PctI GAATGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 7 cut(s) 316, 319, 769, 814, 817, 820, 823
PleI GAGTC 1 cut(s) 133
PmaCI CACGTG 1 cut(s) 95
PmlI CACGTG 1 cut(s) 95
PpsI GAGTC 1 cut(s) 133
Ppu21I YACGTR 1 cut(s) 95
PshBI ATTAAT 2 cut(s) 21, 45
PspCI CACGTG 1 cut(s) 95
PstI CTGCAG 1 cut(s) 319
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacII CCGCGG 1 cut(s) 689
SaqAI TTAA 5 cut(s) 5, 21, 26, 45, 698
SatI GCNGC 7 cut(s) 315, 318, 768, 813, 816, 819, 822
Sau3AI GATC 3 cut(s) 31, 528, 582
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 202, 346, 642
SetI ASST 6 cut(s) 97, 200, 274, 417, 567, 814
SfaNI GCATC 4 cut(s) 175, 319, 382, 835
SfcI CTRYAG 1 cut(s) 315
Sfr303I CCGCGG 1 cut(s) 689
SgrBI CCGCGG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 362, 449
SmoI CTYRAG 2 cut(s) 362, 449
Sse9I AATT 8 cut(s) 6, 18, 22, 27, 106, 333, 369, 396
SsiI CCGC 7 cut(s) 155, 354, 419, 686, 688, 819, 858
SspI AATATT 1 cut(s) 498
SspMI CTAG 2 cut(s) 729, 734
StyD4I CCNGG 3 cut(s) 200, 344, 640
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 123, 160, 286
TasI AATT 8 cut(s) 6, 18, 22, 27, 106, 333, 369, 396
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 5 cut(s) 5, 21, 26, 45, 698
Tru9I TTAA 5 cut(s) 5, 21, 26, 45, 698
TscAI CASTG 2 cut(s) 529, 555
TseI GCWGC 6 cut(s) 314, 317, 767, 812, 815, 821
TspDTI ATGAA 5 cut(s) 100, 162, 422, 453, 575
TspGWI ACGGA 2 cut(s) 250, 306
TspRI CASTG 2 cut(s) 529, 555
VspI ATTAAT 2 cut(s) 21, 45
XapI RAATTY 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 2 cut(s) 729, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.