Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007676

Physical Location & Seq

Genomic Coordinates Forward (+)

22390091 .. 22391702

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCCTTGCGCTTTGGTGTTGCCGAACTCGCCGATTTTCTCGCCGTCGCAAATTCCCTCCCATTTTTTCTGGTCGTCGGCTTTAGCTTCCCCTTCTGCCTGTTCTTCGCCTAGGGTCCTCCATGGTGCGCCGCCCACACCGTCGCGGTCGCCGGCTTTGACGACGCCGGCTTTTGAGTCTCGGTTTCAGAGGCAGGTGATAAGCGAGTGCCAGAAGCAGGCTTCGGGTTTGGCTCTGAAGAGGCCGATGATGATTGATATTCCGGTGGCGCCCTTGGTGAATTTTAAGGTGGAGTCGAGTGAGGGTGCGGCGGAGAGAGTGGAGGTGCTGGAGGTTGATGAGGATGGGTATTCGGTTTATTGTAAGAGGGGGAGGAGAGGTCCAATGGAGGATCGTTACTCTGCTGTTGTTGATCTTCACGATGATTCGAGACGGGCATTCTTTGGTGTGTTTGATGGGCATGGAGGAGCAAAAGCGGCTGAATTTGCAGCCAAGAACTTGACTAAAAACATTGCGGATCGTTTGACGAGTGGAAGTGAAGAGGAAATCGTGGAAGCAGTCAAAGATGGTTATCTAACCACCGATGTCGAGTTTCTGACGGAGGATGTTGGTGGTGGCGCATGCTGTGTGACTGCCTTGATACAAAAGGGCAACCTTGTGGTGTCCAATGCCGGTGACTGTCGTGCTGTTATGAGCCGAGGAGGGGTTGCCGAGGCCCTTACATCCGATCATCATCCTTCTAGAATAGATGAAAAGGAAAGGATTGAGACCACGGGTGGTTATGTAGATTGTTGCCGCGGTGTTTGGAGAATTCAGGGATCTCTTGCTGCTTCGAGATCAATTGGAGATCGACAGCTTAAAGAATGGGTGATAGCAGAACCAGAGACTAAAGTCTTGAGAATAAACCCCGAATGCGAGTTTTTAATGTTAGCTTCTGATGGCCTTTGGGACAAGGTTACTAATCAAGAGGCGGTAGATATAGTTCGCCCTTTATGCGTTGGTGTTGATAAGCCGGAGCTCTTTTCTGCTTGCAAGAAGCTCGTTGATCTGTCAATAACGAGAGGTTCCATGGATGATACAAGTGTGATGATAGTCCAATTAGGTCGTTTCGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009888 GO:0009987 GO:0010033 GO:0010374 GO:0010440 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0090558 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

373

Amino Acids

40.38

Weight (kDa)

5.26

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	117 - 359	6.6e-58	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07160 AT1G29620 AT1G32720 AT2G14270 AT2G30020
fragaria_vesca	FvH4_7g24650 FvH4_7g24650
malus_domestica	MD01G1154600.v1.1 MD07G1223600.v1.1 MD07G1223700.v1.1
prunus_persica	Prupe.2G252200_v2.0.a1
pyrus_communis	pycom01g17200 pycom07g20220
rosa_chinensis	RchiOBHm_Chr1g0370481
rosa_laevigata	RLG00000027036
rosa_multiflora	Rmu_sc0002558.1_g000010
rosa_roxburghii	Rroxscaffold_4G00286520
rosa_rugosa	Rorug01G0357100.1 Rorug01G0357200
rosa_samantha	Rh1AG365700 Rh1BG328600 Rh1CG341700 Rh1DG358900
rosa_wichuraiana	Rw1G032220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	184
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	2 cut(s)	145, 798
AciI	CCGC	9 cut(s)	131, 145, 308, 311, 476, 515, 796, 798, 971
AclWI	GGATC	3 cut(s)	399, 525, 826
AcsI	RAATTY	4 cut(s)	51, 280, 482, 810
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	2 cut(s)	164, 269
AfiI	CCNNNNNNNGG	2 cut(s)	217, 703
AluBI	AGCT	5 cut(s)	86, 856, 932, 1018, 1039
AluI	AGCT	5 cut(s)	86, 856, 932, 1018, 1039
Alw21I	GWGCWC	1 cut(s)	1020
Alw26I	GTCTC	4 cut(s)	183, 424, 761, 878
AlwI	GGATC	3 cut(s)	399, 525, 826
AoxI	GGCC	3 cut(s)	242, 714, 940
ApeKI	GCWGC	2 cut(s)	488, 827
ApoI	RAATTY	4 cut(s)	51, 280, 482, 810
AspA2I	CCTAGG	1 cut(s)	110
AspLEI	GCGC	4 cut(s)	11, 130, 271, 620
AspS9I	GGNCC	3 cut(s)	115, 380, 715
AsuHPI	GGTGA	4 cut(s)	208, 289, 686, 880
AvaII	GGWCC	2 cut(s)	115, 380
AvrII	CCTAGG	1 cut(s)	110
BaeI	ACNNNNGTAYC	2 cut(s)	1068, 1101
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	1020
Bbv12I	GWGCWC	1 cut(s)	1020
BbvI	GCAGC	2 cut(s)	500, 814
BccI	CCATC	4 cut(s)	338, 449, 560, 932
BceAI	ACGGC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	1021, 1055
BcoDI	GTCTC	4 cut(s)	183, 424, 761, 878
BfaI	CTAG	2 cut(s)	111, 741
BfoI	RGCGCY	1 cut(s)	272
BfuAI	ACCTGC	1 cut(s)	184
BisI	GCNGC	6 cut(s)	131, 309, 477, 489, 796, 828
BlnI	CCTAGG	1 cut(s)	110
BlsI	GCNGC	6 cut(s)	132, 310, 478, 490, 797, 829
Bme18I	GGWCC	2 cut(s)	115, 380
BmgT120I	GGNCC	3 cut(s)	115, 380, 715
BmiI	GGNNCC	3 cut(s)	116, 270, 1066
BoxI	GACNNNNGTC	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	916
BsaBI	GATNNNNATC	2 cut(s)	570, 732
BsaHI	GRCGYC	2 cut(s)	164, 269
BsaI	GGTCTC	1 cut(s)	761
BsaJI	CCNNGG	8 cut(s)	110, 121, 273, 697, 711, 771, 796, 1068
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 703
Bse118I	RCCGGY	3 cut(s)	151, 166, 671
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	2 cut(s)	570, 732
BseDI	CCNNGG	8 cut(s)	110, 121, 273, 697, 711, 771, 796, 1068
BseGI	GGATG	5 cut(s)	349, 610, 722, 733, 1078
BseJI	GATNNNNATC	2 cut(s)	570, 732
BseLI	CCNNNNNNNGG	2 cut(s)	217, 703
BseMI	GCAATG	1 cut(s)	510
BseRI	GAGGAG	3 cut(s)	388, 480, 714
BseXI	GCAGC	2 cut(s)	500, 814
Bsh1236I	CGCG	2 cut(s)	145, 798
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	244, 716, 942
BshNI	GGYRCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	1020
BsiSI	CCGG	5 cut(s)	152, 167, 263, 672, 1013
BslFI	GGGAC	1 cut(s)	962
BslI	CCNNNNNNNGG	2 cut(s)	217, 703
BsmAI	GTCTC	4 cut(s)	183, 424, 761, 878
BsmBI	CGTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	962
BsmI	GAATGC	2 cut(s)	437, 917
BsnI	GGCC	3 cut(s)	244, 716, 942
Bso31I	GGTCTC	1 cut(s)	761
Bsp1286I	GDGCHC	1 cut(s)	1020
Bsp143I	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
Bsp19I	CCATGG	2 cut(s)	121, 1068
BspACI	CCGC	9 cut(s)	131, 145, 308, 311, 476, 515, 796, 798, 971
BspANI	GGCC	3 cut(s)	244, 716, 942
BspFNI	CGCG	2 cut(s)	145, 798
BspLI	GGNNCC	3 cut(s)	116, 270, 1066
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	3 cut(s)	399, 525, 826
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	3 cut(s)	151, 166, 671
BssAI	RCCGGY	3 cut(s)	151, 166, 671
BssECI	CCNNGG	8 cut(s)	110, 121, 273, 697, 711, 771, 796, 1068
BssMI	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
BssNI	GRCGYC	2 cut(s)	164, 269
BssT1I	CCWWGG	4 cut(s)	110, 121, 273, 1068
Bst4CI	ACNGT	2 cut(s)	141, 680
Bst6I	CTCTTC	2 cut(s)	233, 534
BstACI	GRCGYC	2 cut(s)	164, 269
BstC8I	GCNNGC	5 cut(s)	153, 168, 219, 622, 1030
BstDSI	CCRYGG	4 cut(s)	121, 771, 796, 1068
BstF5I	GGATG	5 cut(s)	349, 610, 722, 733, 1078
BstFNI	CGCG	2 cut(s)	145, 798
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	4 cut(s)	11, 130, 271, 620
BstKTI	GATC	8 cut(s)	394, 415, 520, 730, 821, 839, 850, 1048
BstMAI	GTCTC	4 cut(s)	183, 424, 761, 878
BstMBI	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 476, 485, 993
BstNSI	RCATGY	1 cut(s)	624
BstPAI	GACNNNNGTC	1 cut(s)	890
BstUI	CGCG	2 cut(s)	145, 798
BstV1I	GCAGC	2 cut(s)	500, 814
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	244, 716, 942
BtgI	CCRYGG	4 cut(s)	121, 771, 796, 1068
BtsCI	GGATG	5 cut(s)	349, 610, 722, 733, 1078
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	5 cut(s)	153, 168, 219, 622, 1030
CfoI	GCGC	4 cut(s)	11, 130, 271, 620
Cfr10I	RCCGGY	3 cut(s)	151, 166, 671
Cfr13I	GGNCC	3 cut(s)	115, 380, 715
Cfr42I	CCGCGG	1 cut(s)	799
CseI	GACGC	1 cut(s)	172
CviAII	CATG	4 cut(s)	122, 461, 621, 1069
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	8 cut(s)	393, 414, 519, 729, 820, 838, 849, 1047
DpnII	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
Eam1104I	CTCTTC	2 cut(s)	233, 534
EarI	CTCTTC	2 cut(s)	233, 534
EciI	GGCGGA	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	1018
Eco130I	CCWWGG	4 cut(s)	110, 121, 273, 1068
Eco24I	GRGCYC	1 cut(s)	1020
Eco31I	GGTCTC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	115, 380
Eco53kI	GAGCTC	1 cut(s)	1018
Eco57I	CTGAAG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	1018
EcoO109I	RGGNCCY	2 cut(s)	115, 715
EcoRI	GAATTC	1 cut(s)	810
EcoT14I	CCWWGG	4 cut(s)	110, 121, 273, 1068
EcoT38I	GRGCYC	1 cut(s)	1020
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	4 cut(s)	110, 121, 273, 1068
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	4 cut(s)	125, 464, 624, 1072
FaiI	YATR	9 cut(s)	123, 462, 622, 692, 783, 980, 994, 1070, 1117
FaqI	GGGAC	1 cut(s)	962
FatI	CATG	4 cut(s)	121, 460, 620, 1068
Fnu4HI	GCNGC	6 cut(s)	131, 309, 477, 489, 796, 828
FokI	GGATG	5 cut(s)	356, 617, 709, 720, 1085
FriOI	GRGCYC	1 cut(s)	1020
Fsp4HI	GCNGC	6 cut(s)	131, 309, 477, 489, 796, 828
FspBI	CTAG	2 cut(s)	111, 741
GlaI	GCGC	4 cut(s)	10, 129, 270, 619
GluI	GCNGC	6 cut(s)	131, 309, 477, 489, 796, 828
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	244, 716, 942
HapII	CCGG	5 cut(s)	152, 167, 263, 672, 1013
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	4 cut(s)	11, 130, 271, 620
Hin1I	GRCGYC	2 cut(s)	164, 269
Hin1II	CATG	4 cut(s)	125, 464, 624, 1072
Hin6I	GCGC	4 cut(s)	9, 128, 269, 618
HinP1I	GCGC	4 cut(s)	9, 128, 269, 618
HinfI	GANTC	3 cut(s)	176, 293, 425
HpaII	CCGG	5 cut(s)	152, 167, 263, 672, 1013
HphI	GGTGA	4 cut(s)	208, 289, 686, 880
Hpy188I	TCNGA	5 cut(s)	189, 237, 597, 727, 937
Hpy188III	TCNNGA	6 cut(s)	419, 429, 741, 834, 895, 965
Hpy99I	CGWCG	4 cut(s)	49, 79, 145, 166
HpyAV	CCTTC	2 cut(s)	102, 747
HpyCH4III	ACNGT	2 cut(s)	141, 680
HpyCH4V	TGCA	2 cut(s)	488, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 476, 485, 993
Hsp92I	GRCGYC	2 cut(s)	164, 269
Hsp92II	CATG	4 cut(s)	125, 464, 624, 1072
HspAI	GCGC	4 cut(s)	9, 128, 269, 618
KasI	GGCGCC	1 cut(s)	268
KroI	GCCGGC	2 cut(s)	151, 166
KroNI	GCCGGC	2 cut(s)	153, 168
KspI	CCGCGG	1 cut(s)	799
Kzo9I	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
LmnI	GCTCC	2 cut(s)	467, 1015
Lsp1109I	GCAGC	2 cut(s)	500, 814
MaeI	CTAG	2 cut(s)	111, 741
MaeIII	GTNAC	4 cut(s)	395, 628, 674, 955
MalI	GATC	8 cut(s)	393, 414, 519, 729, 820, 838, 849, 1047
MboI	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
MboII	GAAGA	4 cut(s)	96, 250, 407, 551
MfeI	CAATTG	1 cut(s)	840
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	1020
MluCI	AATT	6 cut(s)	51, 280, 482, 810, 840, 1097
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	2 cut(s)	185, 302
MroNI	GCCGGC	2 cut(s)	151, 166
MseI	TTAA	3 cut(s)	285, 858, 923
MspA1I	CMGCKG	1 cut(s)	798
MspI	CCGG	5 cut(s)	152, 167, 263, 672, 1013
MunI	CAATTG	1 cut(s)	840
Mva1269I	GAATGC	2 cut(s)	437, 917
MvnI	CGCG	2 cut(s)	145, 798
MwoI	GCNNNNNNNGC	4 cut(s)	28, 476, 485, 993
NaeI	GCCGGC	2 cut(s)	153, 168
NarI	GGCGCC	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	121, 1068
NdeII	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
NgoMIV	GCCGGC	2 cut(s)	151, 166
NlaIII	CATG	4 cut(s)	125, 464, 624, 1072
NlaIV	GGNNCC	3 cut(s)	116, 270, 1066
NmeAIII	GCCGAG	2 cut(s)	722, 736
NmuCI	GTSAC	2 cut(s)	628, 674
NspI	RCATGY	1 cut(s)	624
PaeI	GCATGC	1 cut(s)	624
PaqCI	CACCTGC	1 cut(s)	184
PctI	GAATGC	2 cut(s)	437, 917
PdiI	GCCGGC	2 cut(s)	153, 168
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	6 cut(s)	132, 310, 478, 490, 797, 829
PleI	GAGTC	2 cut(s)	184, 301
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	184, 301
PpuMI	RGGWCCY	1 cut(s)	115
PshAI	GACNNNNGTC	1 cut(s)	890
Psp124BI	GAGCTC	1 cut(s)	1020
Psp5II	RGGWCCY	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	116, 270, 1066
PspPI	GGNCC	3 cut(s)	115, 380, 715
PspPPI	RGGWCCY	1 cut(s)	115
PsrI	GAACNNNNNNTAC	2 cut(s)	966, 998
PsuI	RGATCY	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	1020
SacII	CCGCGG	1 cut(s)	799
SaqAI	TTAA	3 cut(s)	285, 858, 923
SatI	GCNGC	6 cut(s)	131, 309, 477, 489, 796, 828
Sau3AI	GATC	8 cut(s)	391, 412, 517, 727, 818, 836, 847, 1045
Sau96I	GGNCC	3 cut(s)	115, 380, 715
SchI	GAGTC	2 cut(s)	185, 302
SduI	GDGCHC	1 cut(s)	1020
SfoI	GGCGCC	1 cut(s)	270
Sfr303I	CCGCGG	1 cut(s)	799
SgrBI	CCGCGG	1 cut(s)	799
SinI	GGWCC	2 cut(s)	115, 380
SmlI	CTYRAG	1 cut(s)	895
SmoI	CTYRAG	1 cut(s)	895
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	6 cut(s)	51, 280, 482, 810, 840, 1097
SsiI	CCGC	9 cut(s)	131, 145, 308, 311, 476, 515, 796, 798, 971
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	111, 741
SstI	GAGCTC	1 cut(s)	1020
StyI	CCWWGG	4 cut(s)	110, 121, 273, 1068
TaaI	ACNGT	2 cut(s)	141, 680
TaqI	TCGA	5 cut(s)	296, 428, 588, 833, 850
TasI	AATT	6 cut(s)	51, 280, 482, 810, 840, 1097
TauI	GCSGC	4 cut(s)	133, 311, 479, 798
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	285, 858, 923
Tru9I	TTAA	3 cut(s)	285, 858, 923
TseFI	GTSAC	2 cut(s)	628, 674
TseI	GCWGC	2 cut(s)	488, 827
Tsp45I	GTSAC	2 cut(s)	628, 674
TspDTI	ATGAA	1 cut(s)	765
TspGWI	ACGGA	1 cut(s)	614
VpaK11BI	GGWCC	2 cut(s)	115, 380
XapI	RAATTY	4 cut(s)	51, 280, 482, 810
XbaI	TCTAGA	1 cut(s)	740
XceI	RCATGY	1 cut(s)	624
XmaJI	CCTAGG	1 cut(s)	110
XspI	CTAG	2 cut(s)	111, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.