pycom07g22120

Peptide methionine sulfoxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011797
Physical Location & Seq
Reverse (-)
23530426 .. 23532868
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGCTCACATTCTTCACCACCACCACCGCAACGGTACCTAAATTCTCCCTCTCTAACCCCTTCCTTTCTCTCTCTAAACTCCGACACAAACCCGCCTCCAATTTCCCGCAGACCCACAGGACCATCTCCTTCCGCACCCCCCAAATGAACATCCTCAACAAGCTCGGCTTCGGCCCCAAGACCGCTTACCCCAACTCCGAATCCTCCTCTATCGCCCAGGGCCCCGACGATGACGTTCCGGCGCTGGGTCAGCAGTTCGCCCAGTTTGGAGCCGGGTGCTTCTGGGGTGTCGAGCTGGCGTTTCAGCGAGTACCCGGCGTGACGAAGACGGAGGTTGGGTACACCCAGGGGTTTCTGCACAACCCGAGTTACGAGGACGTGTGTACCGGCACCACCCGGCACTCGGAGGTTGTGAGAGTGCAGTACGACCCTAAAGAGTGCAACTTTGAGAGCCTGCTCGATCTTTTCTGGTCCAGGCACGACCCCACCACGCTCAATCGCCAGGGTGGTGATGTTGGGACACAATACAGATCTGGAATATACTTCTATGCACCTGACCAAGAGAAGGAAGCACGCGAATCTCTGGAGCAACACCAGAAGAAAGTGAACCGAAAGATTGTCACAGAGATCCTTCCTGCCAAGAAGTTCTACCGAGCGGAGGAGTACCACCAGCAGTACCTTGCAAAAGGGGGACGTTTTGGTTTTAGGCAATCTACTGAGAAAGGATGCAATCGATCCAATCCGATGCTACGGCTAATCTATTTGGTTATGTCTCTAAAGGCAAACCGTACTCGTTATTGTTCATAG

Protein Analysis

269

Amino Acids

30.54

Weight (kDa)

9.38

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 87 - 229 5.4e-60 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca FvH4_7g26800
malus_domestica MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica Prupe.2G271200_v2.0.a1
pyrus_communis pycom01g18690 pycom07g22120
rosa_chinensis RchiOBHm_Chr1g0373491
rosa_laevigata RLG00000026822
rosa_roxburghii Rroxscaffold_4G00284210
rosa_rugosa Rorug01G0377600
rosa_samantha Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana Rw1G034840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 34
AccB1I GGYRCC 2 cut(s) 34, 389
AccBSI CCGCTC 1 cut(s) 656
AccII CGCG 1 cut(s) 576
AciI CCGC 6 cut(s) 27, 93, 107, 133, 183, 656
AclWI GGATC 2 cut(s) 622, 729
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 8 cut(s) 36, 312, 341, 385, 425, 665, 677, 790
AfiI CCNNNNNNNGG 4 cut(s) 245, 403, 565, 658
AflIII ACRYGT 1 cut(s) 378
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 4 cut(s) 216, 345, 473, 501
AluBI AGCT 2 cut(s) 163, 295
AluI AGCT 2 cut(s) 163, 295
Alw26I GTCTC 1 cut(s) 777
AlwI GGATC 2 cut(s) 622, 729
Ama87I CYCGRG 1 cut(s) 364
AoxI GGCC 2 cut(s) 172, 220
ApaI GGGCCC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 41
Asp718I GGTACC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 5 cut(s) 120, 173, 220, 221, 471
AsuC2I CCSGG 3 cut(s) 274, 315, 397
AsuHPI GGTGA 2 cut(s) 7, 521
AvaI CYCGRG 1 cut(s) 364
AvaII GGWCC 2 cut(s) 120, 471
BaeGI GKGCMC 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 367, 400
BanI GGYRCC 2 cut(s) 34, 389
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 332
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 4 cut(s) 218, 347, 475, 503
BcnI CCSGG 3 cut(s) 274, 315, 397
BcoDI GTCTC 1 cut(s) 777
BfoI RGCGCY 1 cut(s) 245
BglII AGATCT 1 cut(s) 530
Bme1390I CCNGG 7 cut(s) 218, 274, 315, 347, 397, 475, 503
Bme18I GGWCC 2 cut(s) 120, 471
BmeT110I CYCGRG 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 5 cut(s) 120, 173, 220, 221, 471
BmiI GGNNCC 6 cut(s) 36, 175, 222, 223, 271, 391
BmrFI CCNGG 7 cut(s) 218, 274, 315, 347, 397, 475, 503
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 716, 735
BmuI ACTGGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 332
BpmI CTGGAG 1 cut(s) 605
BpuMI CCSGG 3 cut(s) 274, 315, 397
Bsa29I ATCGAT 1 cut(s) 733
BsaJI CCNNGG 5 cut(s) 216, 217, 345, 346, 502
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 323, 353
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 403, 565, 658
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 4 cut(s) 218, 347, 475, 503
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 5 cut(s) 216, 217, 345, 346, 502
BseGI GGATG 2 cut(s) 150, 731
BseLI CCNNNNNNNGG 4 cut(s) 245, 403, 565, 658
BseMII CTCAG 1 cut(s) 708
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 2 cut(s) 196, 674
BseSI GKGCMC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 2 cut(s) 341, 440
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 2 cut(s) 174, 222
BshNI GGYRCC 2 cut(s) 34, 389
BshVI ATCGAT 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 364
BsiSI CCGG 5 cut(s) 239, 273, 315, 387, 397
BslFI GGGAC 2 cut(s) 532, 705
BslI CCNNNNNNNGG 4 cut(s) 245, 403, 565, 658
BsmAI GTCTC 1 cut(s) 777
BsmFI GGGAC 2 cut(s) 532, 705
BsnI GGCC 2 cut(s) 174, 222
BsoBI CYCGRG 1 cut(s) 364
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 460, 530, 627, 734
BspACI CCGC 6 cut(s) 27, 93, 107, 133, 183, 656
BspANI GGCC 2 cut(s) 174, 222
BspCNI CTCAG 1 cut(s) 709
BspDI ATCGAT 1 cut(s) 733
BspFNI CGCG 1 cut(s) 576
BspLI GGNNCC 6 cut(s) 36, 175, 222, 223, 271, 391
BspPI GGATC 2 cut(s) 622, 729
BspT107I GGYRCC 2 cut(s) 34, 389
BsrBI CCGCTC 1 cut(s) 656
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 5 cut(s) 216, 217, 345, 346, 502
BssMI GATC 4 cut(s) 460, 530, 627, 734
Bst2UI CCWGG 4 cut(s) 218, 347, 475, 503
Bst4CI ACNGT 2 cut(s) 34, 788
BstC8I GCNNGC 3 cut(s) 297, 455, 574
BstDEI CTNAG 1 cut(s) 717
BstF5I GGATG 2 cut(s) 150, 731
BstFNI CGCG 1 cut(s) 576
BstH2I RGCGCY 1 cut(s) 245
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 4 cut(s) 463, 533, 630, 737
BstMAI GTCTC 1 cut(s) 777
BstMBI GATC 4 cut(s) 460, 530, 627, 734
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 4 cut(s) 218, 347, 475, 503
BstSCI CCNGG 7 cut(s) 216, 272, 313, 345, 395, 473, 501
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 576
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 2 cut(s) 530, 627
BstYI RGATCY 2 cut(s) 530, 627
Bsu15I ATCGAT 1 cut(s) 733
BsuRI GGCC 2 cut(s) 174, 222
BsuTUI ATCGAT 1 cut(s) 733
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 2 cut(s) 150, 731
Cac8I GCNNGC 3 cut(s) 297, 455, 574
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 386
Cfr13I GGNCC 5 cut(s) 120, 173, 220, 221, 471
ClaI ATCGAT 1 cut(s) 733
Csp6I GTAC 8 cut(s) 35, 311, 340, 384, 424, 664, 676, 789
CviJI RGCY 8 cut(s) 163, 168, 174, 222, 272, 295, 453, 754
CviKI_1 RGCY 8 cut(s) 163, 168, 174, 222, 272, 295, 453, 754
CviQI GTAC 8 cut(s) 35, 311, 340, 384, 424, 664, 676, 789
DdeI CTNAG 1 cut(s) 717
DpnI GATC 4 cut(s) 462, 532, 629, 736
DpnII GATC 4 cut(s) 460, 530, 627, 734
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 120, 471
Eco88I CYCGRG 1 cut(s) 364
EcoO109I RGGNCCY 2 cut(s) 220, 221
EcoRII CCWGG 4 cut(s) 216, 345, 473, 501
EcoT38I GRGCYC 1 cut(s) 224
FaiI YATR 4 cut(s) 541, 549, 770, 805
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 532, 705
FauI CCCGC 2 cut(s) 100, 114
FokI GGATG 2 cut(s) 137, 738
FriOI GRGCYC 1 cut(s) 224
GlaI GCGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 605
HaeII RGCGCY 1 cut(s) 245
HaeIII GGCC 2 cut(s) 174, 222
HapII CCGG 5 cut(s) 239, 273, 315, 387, 397
HhaI GCGC 1 cut(s) 244
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 2 cut(s) 200, 578
HpaII CCGG 5 cut(s) 239, 273, 315, 387, 397
HphI GGTGA 2 cut(s) 7, 521
Hpy166II GTNNAC 3 cut(s) 342, 384, 607
Hpy188I TCNGA 4 cut(s) 83, 199, 406, 744
Hpy188III TCNNGA 2 cut(s) 534, 584
Hpy8I GTNNAC 3 cut(s) 342, 384, 607
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 4 cut(s) 70, 139, 559, 641
HpyCH4III ACNGT 2 cut(s) 34, 788
HpyCH4IV ACGT 3 cut(s) 234, 378, 694
HpyCH4V TGCA 6 cut(s) 358, 421, 441, 551, 683, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 717
HpySE526I ACGT 3 cut(s) 234, 378, 694
HspAI GCGC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 460, 530, 627, 734
LmnI GCTCC 2 cut(s) 269, 586
LweI GCATC 2 cut(s) 716, 735
MaeII ACGT 3 cut(s) 234, 378, 694
MaeIII GTNAC 3 cut(s) 319, 368, 619
MalI GATC 4 cut(s) 462, 532, 629, 736
MbiI CCGCTC 1 cut(s) 656
MboI GATC 4 cut(s) 460, 530, 627, 734
MboII GAAGA 3 cut(s) 4, 337, 610
MflI RGATCY 2 cut(s) 530, 627
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 2 cut(s) 41, 100
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 9 cut(s) 59, 106, 164, 214, 217, 325, 367, 400, 652
MspI CCGG 5 cut(s) 239, 273, 315, 387, 397
MspR9I CCNGG 7 cut(s) 218, 274, 315, 347, 397, 475, 503
MvaI CCWGG 4 cut(s) 218, 347, 475, 503
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 1 cut(s) 250
NciI CCSGG 3 cut(s) 274, 315, 397
NdeII GATC 4 cut(s) 460, 530, 627, 734
NlaIV GGNNCC 6 cut(s) 36, 175, 222, 223, 271, 391
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 319, 619
PasI CCCWGGG 2 cut(s) 217, 346
PfeI GAWTC 2 cut(s) 200, 578
Psp6I CCWGG 4 cut(s) 216, 345, 473, 501
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 4 cut(s) 216, 345, 473, 501
PspN4I GGNNCC 6 cut(s) 36, 175, 222, 223, 271, 391
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 5 cut(s) 120, 173, 220, 221, 471
PsuI RGATCY 2 cut(s) 530, 627
RsaI GTAC 8 cut(s) 36, 312, 341, 385, 425, 665, 677, 790
RsaNI GTAC 8 cut(s) 35, 311, 340, 384, 424, 664, 676, 789
Sau3AI GATC 4 cut(s) 460, 530, 627, 734
Sau96I GGNCC 5 cut(s) 120, 173, 220, 221, 471
ScrFI CCNGG 7 cut(s) 218, 274, 315, 347, 397, 475, 503
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 2 cut(s) 716, 735
SinI GGWCC 2 cut(s) 120, 471
Sse9I AATT 2 cut(s) 41, 100
SsiI CCGC 6 cut(s) 27, 93, 107, 133, 183, 656
StyD4I CCNGG 7 cut(s) 216, 272, 313, 345, 395, 473, 501
TaaI ACNGT 2 cut(s) 34, 788
TaiI ACGT 3 cut(s) 237, 381, 697
TaqI TCGA 3 cut(s) 291, 459, 733
TasI AATT 2 cut(s) 41, 100
TfiI GAWTC 2 cut(s) 200, 578
TseFI GTSAC 2 cut(s) 319, 619
Tsp45I GTSAC 2 cut(s) 319, 619
TspDTI ATGAA 2 cut(s) 161, 792
TspGWI ACGGA 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 120, 471
XapI RAATTY 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.