Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010429

Physical Location & Seq

Genomic Coordinates Forward (+)

184534 .. 187202

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGATGCTTCTGCCAGTGCCAGGTTCGACTTGCTTCCCTTCCATTCAATTGGCTTCTCCGACACTCATCCGCCACCACCACCATGTCTGGCCTCTGTCTGCCACCGCAGCCGCTGCCGTTACCAATTCATCCGAACCCCATCTGCCCCCAATTCCATCTTCCTCAACTACGAATCATTTAACCTCAACCTCGAGACGACGCCGCTTTGGGGACGACCAAGCTGCCGCTTCCCCCTATGACTTTGGCCCCCTCCTCACCTTCCTCGCCAACTCATTGTCATCCGATGATGATTCCGCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTCCAACCTCACTCGACCCGTCCGAGTTCCAGCTGGCCCAGTCCTACCGCGCTGTCCCTGCCCCACTCTGGCACTCCCTCCTCAAGTCCCTCTGCGCCTCCCACTCCTCTTCCGACATTGGACTTGCCTACGCCGTCGTTTCGTGGCTCCAAAAGCACAACCTCTGCTTCTCCTACGAACTCCTCTACTCCATCCTCATCCACGCCCTCGGCCGCTCCGAGAAGCTCTACGAGGCTTTCTTGCTCTCCCAGCGCCAATCCCTCACTCCCCTCACCTACAATGCACTCATCGGCGCCTGTGCTCGCAACGGGGACCTCGAGAAGGCCCTCCATTTGATGTCCCGCATGCGCCAGGACGGTTACCGCTCCGACTTCGTCAACTACAGCTTGATCATTCAGTCCCTCACCCGCTCCAATAAGATTGATTCCCCAATCATGTTCAAGCTCTACAGGGAGATTGAGTCCGAGAGCATTGAGATTGATGGCCAGCTCTTCAACGACATCATTGCTGGTTTCGCTAAGGCCGGCGAGGCCTCCCAGGCTGTGCACCTTCTAGCCATGGTCCAGGCCACTGGCTTGAGCCCCAAAACTGCCACTCTGGTTGCTGTCATCTCAGCCTTGGGGAATTCCGGCAGGGTAGTTGAAGCTGAAGCTATCTTTGAGGAAATGAGAGAAGGAGGATTGCAACCCAGGACTAGGGCTTACAATGCCCTCCTCAAAGGCTATGTGAAGGCAGGCCAACTGAAAGATGCCGAATCCATTGTGTCCCAGATGGAGAAGAGCGGTATTTCTCCTGATGAGCACACTTACAGCCTGCTCATTGATGCCTACGCGAATGCAGGTAGGTGGGAAAGCGCAAGAATTGTGTTGAAAGAGATGGAAGCTAGCAATGTGCAGCCTAATTCCTATGTTTTCAGCAGGATTTTAGCCAGCTACCGTGATAGAGGGGAGTGGCAAAAGTCGTTCCAAGTTTTGAGGGAGATGAAGAGCAGTGGAGTAAGACCCGATAGGCATTTTTACAATGTCATGATTGACACTTTTGGAAAGTCCAACTGTCTTGATCATGCTATGGCTACCTTTGAAAGGATGCTATCTGAGGGAATCCACCCGGACACCGTCACCTGGAATACACTTATAGATTGTCATTGCAAGTCAGGCCACCATGTAAGGGCGGAGGAGTTGTTTGAGGAAATGCAGCAAAGTGGGTGCGCCCCTTGCGCCACCACCTATAACATCATGATCAATTCCTTTGGGGAGCAGCAAAGATGGGATGAGGTGAAAGGCTTGTTGGGGAAGATGCAGTCTCAGGGTTTACTGCCTAACATAGTTACCTATACCACATTAGTTGACATTTATGGAAAGTCGGGGAGATTTACTGATGCAATAGAGTGTTTGGAGGTTATGAAGTCTGCAGGCATGAAGCCATCCCCGACGATGTACAATGCCCTAATTAATGCCTATGCACAAAGAGGTTTGTCGGAGCAAGCACTGAACGCATTTAGGGTAATGAGAGCAGATGGATTAAAACCCAGTCCCTTGGCTCTCAATTCGTTAATCAACGCATTTGGTGAAGATAGAAGGGATACTGAGGCCTTTTCTGTGTTGCAGTACATGAAGGAAAATGACCTGAAACCAGATGTAGTTACGTATACTACACTTATGAAAACCCTTATCCGTGTTGATAAATTTTGTAAGGTTCCAGCAGTGTATGAAGAAATGATTATGTCTGGCTGCACTCCAGATAGGAAAGCTAGGGCAATGTTACGGTCTGCGCTGAAATACATGAAACAGACACTCAGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009295 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010239 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034357 GO:0034641 GO:0042644 GO:0042646 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

711

Amino Acids

78.71

Weight (kDa)

6.84

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	191 - 293	2.9e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	201 - 244	1.1e-07	PPR repeat family
PPR	PF01535	201 - 229	7.8e-08	PPR repeat
PPR_long	PF17177	202 - 356	2.3e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	262 - 362	4.6e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	328 - 388	4.6e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	341 - 388	5.6e-15	PPR repeat family
PPR	PF01535	343 - 372	1.9e-06	PPR repeat
PPR_long	PF17177	359 - 445	1.9e-10	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	361 - 471	1.3e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	371 - 403	4.4e-06	PPR repeat
PPR_3	PF13812	398 - 458	2.4e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	449 - 483	7.9e-06	PPR repeat family
PPR_long	PF17177	450 - 604	3.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	470 - 528	4.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	476 - 508	1.1e-11	PPR repeat
PPR_2	PF13041	479 - 526	4.3e-17	PPR repeat family
PPR	PF01535	482 - 512	3.4e-10	PPR repeat
PPR_2	PF13041	514 - 559	2.2e-10	PPR repeat family
PPR_3	PF13812	538 - 598	1.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	546 - 578	4e-07	PPR repeat
PPR_2	PF13041	549 - 585	2.5e-07	PPR repeat family
PPR	PF01535	552 - 581	7.9e-06	PPR repeat
PPR_3	PF13812	581 - 633	4.4e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	587 - 631	4e-07	PPR repeat family
TPR_24	PF23276	589 - 680	1.2e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	610 - 665	4.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	624 - 666	1.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42310
fragaria_vesca	FvH4_2g37460 FvH4_2g37460 FvH4_2g37460 FvH4_5g30181
malus_domestica	MD12G1003200.v1.1 MD15G1002100.v1.1
prunus_persica	Prupe.1G354600_v2.0.a1
pyrus_communis	pycom08g00200 pycom15g00100
rosa_chinensis	RchiOBHm_Chr6g0304261
rosa_laevigata	RLG00000010997
rosa_multiflora	Rmu_co8272487.1_g000001 Rmu_ssc0000218.1_g000026
rosa_roxburghii	Rroxscaffold_7G00163900
rosa_rugosa	Rorug06G0329300
rosa_samantha	Rh6AG442900 Rh6BG459600 Rh6CG455600 Rh6DG442400
rosa_wichuraiana	Rw6G038420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1157
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	4 cut(s)	543, 693, 738, 1110
AccI	GTMKAC	1 cut(s)	1976
AccII	CGCG	2 cut(s)	378, 1160
AclWI	GGATC	1 cut(s)	2121
AcoI	YGGCCR	2 cut(s)	538, 811
AcsI	RAATTY	2 cut(s)	952, 2012
AcuI	CTGAAG	1 cut(s)	996
AcyI	GRCGYC	2 cut(s)	199, 621
AfaI	GTAC	2 cut(s)	1766, 1937
AfiI	CCNNNNNNNGG	8 cut(s)	20, 208, 396, 649, 1023, 1410, 1449, 1495
AgsI	TTSAA	6 cut(s)	47, 769, 823, 971, 1198, 1409
AjnI	CCWGG	6 cut(s)	19, 678, 864, 891, 1016, 1448
AjuI	GAANNNNNNNTTGG	4 cut(s)	142, 174, 1598, 1630
Alw21I	GWGCWC	3 cut(s)	631, 876, 1131
Alw26I	GTCTC	2 cut(s)	187, 1635
Alw44I	GTGCAC	1 cut(s)	872
AlwI	GGATC	1 cut(s)	2121
AlwNI	CAGNNNCTG	1 cut(s)	113
Ama87I	CYCGRG	2 cut(s)	190, 644
ApaLI	GTGCAC	1 cut(s)	872
ApeKI	GCWGC	7 cut(s)	107, 113, 221, 1222, 1522, 1585, 2058
ApoI	RAATTY	2 cut(s)	952, 2012
AseI	ATTAAT	1 cut(s)	1779
AspLEI	GCGC	9 cut(s)	380, 425, 582, 623, 678, 1184, 1538, 1547, 2101
AspS9I	GGNCC	5 cut(s)	245, 364, 640, 652, 889
AsuC2I	CCSGG	1 cut(s)	1436
AsuHPI	GGTGA	6 cut(s)	247, 592, 724, 1438, 1615, 1907
AsuNHI	GCTAGC	1 cut(s)	1211
AvaI	CYCGRG	2 cut(s)	190, 644
AvaII	GGWCC	2 cut(s)	640, 889
BaeGI	GKGCMC	1 cut(s)	876
BalI	TGGCCA	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	911
Bbv12I	GWGCWC	3 cut(s)	631, 876, 1131
BbvI	GCAGC	7 cut(s)	100, 119, 208, 1234, 1534, 1597, 2045
BccI	CCATC	9 cut(s)	147, 163, 527, 803, 1093, 1198, 1587, 1759, 1838
BceAI	ACGGC	2 cut(s)	101, 446
BcgI	CGANNNNNNTGC	4 cut(s)	203, 237, 815, 849
BciT130I	CCWGG	6 cut(s)	21, 680, 866, 893, 1018, 1450
BciVI	GTATCC	1 cut(s)	1903
BclI	TGATCA	3 cut(s)	717, 1387, 1566
BcnI	CCSGG	1 cut(s)	1436
BcoDI	GTCTC	2 cut(s)	187, 1635
BfaI	CTAG	4 cut(s)	881, 1023, 1212, 2079
BfmI	CTRYAG	3 cut(s)	709, 775, 1737
BfoI	RGCGCY	2 cut(s)	583, 624
BfuAI	ACCTGC	1 cut(s)	1157
BfuI	GTATCC	1 cut(s)	1903
BglI	GCCNNNNNGGC	2 cut(s)	857, 866
Bme1390I	CCNGG	7 cut(s)	21, 680, 866, 893, 1018, 1436, 1450
Bme18I	GGWCC	2 cut(s)	640, 889
BmeT110I	CYCGRG	2 cut(s)	190, 644
BmgT120I	GGNCC	5 cut(s)	245, 364, 640, 652, 889
BmiI	GGNNCC	5 cut(s)	247, 476, 622, 641, 2025
BmrFI	CCNGG	7 cut(s)	21, 680, 866, 893, 1018, 1436, 1450
BmrI	ACTGGG	2 cut(s)	361, 1851
BmsI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
BmtI	GCTAGC	1 cut(s)	1215
BmuI	ACTGGG	2 cut(s)	361, 1851
BpmI	CTGGAG	1 cut(s)	2049
Bpu10I	CCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	395, 925
BpuMI	CCSGG	1 cut(s)	1436
BsaAI	YACGTR	1 cut(s)	1974
BsaHI	GRCGYC	2 cut(s)	199, 621
BsaJI	CCNNGG	6 cut(s)	535, 864, 885, 945, 1016, 1863
BsaXI	ACNNNNNCTCC	4 cut(s)	773, 803, 1493, 1523
Bsc4I	CCNNNNNNNGG	8 cut(s)	20, 208, 396, 649, 1023, 1410, 1449, 1495
Bse118I	RCCGGY	1 cut(s)	851
Bse1I	ACTGG	4 cut(s)	14, 367, 904, 1857
Bse3DI	GCAATG	4 cut(s)	831, 1222, 1471, 2091
BseBI	CCWGG	6 cut(s)	21, 680, 866, 893, 1018, 1450
BseDI	CCNNGG	6 cut(s)	535, 864, 885, 945, 1016, 1863
BseGI	GGATG	8 cut(s)	66, 128, 278, 519, 525, 1419, 1603, 1751
BseLI	CCNNNNNNNGG	8 cut(s)	20, 208, 396, 649, 1023, 1410, 1449, 1495
BseMI	GCAATG	4 cut(s)	831, 1222, 1471, 2091
BseMII	CTCAG	4 cut(s)	954, 1413, 1646, 1905
BseNI	ACTGG	4 cut(s)	14, 367, 904, 1857
BseSI	GKGCMC	1 cut(s)	876
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	7 cut(s)	100, 119, 208, 1234, 1534, 1597, 2045
BseYI	CCCAGC	1 cut(s)	576
BsgI	GTGCAG	2 cut(s)	1241, 2044
Bsh1236I	CGCG	2 cut(s)	378, 1160
Bsh1285I	CGRYCG	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	620
BsiEI	CGRYCG	1 cut(s)	541
BsiHKAI	GWGCWC	3 cut(s)	631, 876, 1131
BsiHKCI	CYCGRG	2 cut(s)	190, 644
BsiSI	CCGG	3 cut(s)	852, 957, 1436
BslFI	GGGAC	8 cut(s)	224, 368, 400, 652, 653, 712, 1078, 1845
BslI	CCNNNNNNNGG	8 cut(s)	20, 208, 396, 649, 1023, 1410, 1449, 1495
BsmAI	GTCTC	2 cut(s)	187, 1635
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	8 cut(s)	224, 368, 400, 652, 653, 712, 1078, 1845
BsmI	GAATGC	1 cut(s)	1168
BsoBI	CYCGRG	2 cut(s)	190, 644
Bsp1286I	GDGCHC	4 cut(s)	631, 876, 911, 1131
Bsp1407I	TGTACA	1 cut(s)	1764
Bsp143I	GATC	4 cut(s)	717, 1387, 1566, 2126
Bsp19I	CCATGG	1 cut(s)	885
BspCNI	CTCAG	4 cut(s)	953, 1414, 1645, 1906
BspFNI	CGCG	2 cut(s)	378, 1160
BspHI	TCATGA	2 cut(s)	1353, 1563
BspLI	GGNNCC	5 cut(s)	247, 476, 622, 641, 2025
BspMAI	CTGCAG	1 cut(s)	1741
BspMI	ACCTGC	1 cut(s)	1157
BspOI	GCTAGC	1 cut(s)	1215
BspPI	GGATC	1 cut(s)	2121
BspQI	GCTCTTC	3 cut(s)	824, 1100, 1307
BspT107I	GGYRCC	1 cut(s)	620
BsrBI	CCGCTC	4 cut(s)	543, 693, 738, 1110
BsrDI	GCAATG	4 cut(s)	831, 1222, 1471, 2091
BsrFI	RCCGGY	1 cut(s)	851
BsrGI	TGTACA	1 cut(s)	1764
BsrI	ACTGG	4 cut(s)	14, 367, 904, 1857
BssAI	RCCGGY	1 cut(s)	851
BssECI	CCNNGG	6 cut(s)	535, 864, 885, 945, 1016, 1863
BssMI	GATC	4 cut(s)	717, 1387, 1566, 2126
BssNAI	GTATAC	1 cut(s)	1977
BssNI	GRCGYC	2 cut(s)	199, 621
BssT1I	CCWWGG	3 cut(s)	885, 945, 1863
Bst1107I	GTATAC	1 cut(s)	1977
Bst2UI	CCWGG	6 cut(s)	21, 680, 866, 893, 1018, 1450
Bst4CI	ACNGT	5 cut(s)	686, 1265, 1382, 1444, 2094
Bst6I	CTCTTC	5 cut(s)	310, 442, 824, 1100, 1307
BstACI	GRCGYC	2 cut(s)	199, 621
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	1764
BstBAI	YACGTR	1 cut(s)	1974
BstDEI	CTNAG	6 cut(s)	846, 940, 1422, 1632, 1914, 2123
BstDSI	CCRYGG	1 cut(s)	885
BstEII	GGTNACC	1 cut(s)	686
BstENI	CCTNNNNNAGG	2 cut(s)	647, 1408
BstF5I	GGATG	8 cut(s)	66, 128, 278, 519, 525, 1419, 1603, 1751
BstFNI	CGCG	2 cut(s)	378, 1160
BstH2I	RGCGCY	2 cut(s)	583, 624
BstHHI	GCGC	9 cut(s)	380, 425, 582, 623, 678, 1184, 1538, 1547, 2101
BstKTI	GATC	4 cut(s)	720, 1390, 1569, 2129
BstMAI	GTCTC	2 cut(s)	187, 1635
BstMBI	GATC	4 cut(s)	717, 1387, 1566, 2126
BstMCI	CGRYCG	1 cut(s)	541
BstNI	CCWGG	6 cut(s)	21, 680, 866, 893, 1018, 1450
BstNSI	RCATGY	1 cut(s)	676
BstPI	GGTNACC	1 cut(s)	686
BstSCI	CCNGG	7 cut(s)	19, 678, 864, 891, 1016, 1434, 1448
BstSFI	CTRYAG	3 cut(s)	709, 775, 1737
BstSLI	GKGCMC	1 cut(s)	876
BstSNI	TACGTA	1 cut(s)	1974
BstUI	CGCG	2 cut(s)	378, 1160
BstV1I	GCAGC	7 cut(s)	100, 119, 208, 1234, 1534, 1597, 2045
BstX2I	RGATCY	1 cut(s)	2126
BstXI	CCANNNNNNTGG	3 cut(s)	49, 899, 1864
BstYI	RGATCY	1 cut(s)	2126
BstZ17I	GTATAC	1 cut(s)	1977
BstZI	CGGCCG	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	1903
BtgI	CCRYGG	1 cut(s)	885
BtsCI	GGATG	8 cut(s)	66, 128, 278, 519, 525, 1419, 1603, 1751
BtsI	GCAGTG	2 cut(s)	1324, 2037
BtsIMutI	CAGTG	5 cut(s)	21, 897, 1324, 1814, 2037
BveI	ACCTGC	1 cut(s)	1157
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	2 cut(s)	1353, 1563
CfoI	GCGC	9 cut(s)	380, 425, 582, 623, 678, 1184, 1538, 1547, 2101
Cfr10I	RCCGGY	1 cut(s)	851
Cfr13I	GGNCC	5 cut(s)	245, 364, 640, 652, 889
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	1765, 1936
CspCI	CAANNNNNGTGG	4 cut(s)	910, 945, 1654, 1689
CviQI	GTAC	2 cut(s)	1765, 1936
DdeI	CTNAG	6 cut(s)	846, 940, 1422, 1632, 1914, 2123
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	4 cut(s)	719, 1389, 1568, 2128
DpnII	GATC	4 cut(s)	717, 1387, 1566, 2126
EaeI	YGGCCR	2 cut(s)	538, 811
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	5 cut(s)	310, 442, 824, 1100, 1307
EarI	CTCTTC	5 cut(s)	310, 442, 824, 1100, 1307
EciI	GGCGGA	3 cut(s)	59, 283, 1514
EclXI	CGGCCG	1 cut(s)	538
Eco105I	TACGTA	1 cut(s)	1974
Eco130I	CCWWGG	3 cut(s)	885, 945, 1863
Eco147I	AGGCCT	2 cut(s)	860, 1919
Eco24I	GRGCYC	1 cut(s)	911
Eco47I	GGWCC	2 cut(s)	640, 889
Eco52I	CGGCCG	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	996
Eco88I	CYCGRG	2 cut(s)	190, 644
Eco91I	GGTNACC	1 cut(s)	686
EcoNI	CCTNNNNNAGG	2 cut(s)	647, 1408
EcoO109I	RGGNCCY	2 cut(s)	640, 652
EcoO65I	GGTNACC	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	952
EcoRII	CCWGG	6 cut(s)	19, 678, 864, 891, 1016, 1448
EcoT14I	CCWWGG	3 cut(s)	885, 945, 1863
EcoT38I	GRGCYC	1 cut(s)	911
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	3 cut(s)	885, 945, 1863
Esp3I	CGTCTC	1 cut(s)	187
FaqI	GGGAC	8 cut(s)	224, 368, 400, 652, 653, 712, 1078, 1845
FauI	CCCGC	2 cut(s)	677, 743
FbaI	TGATCA	3 cut(s)	717, 1387, 1566
FblI	GTMKAC	1 cut(s)	1976
FokI	GGATG	8 cut(s)	53, 115, 265, 506, 512, 1426, 1610, 1738
FriOI	GRGCYC	1 cut(s)	911
FspBI	CTAG	4 cut(s)	881, 1023, 1212, 2079
GlaI	GCGC	9 cut(s)	379, 424, 581, 622, 677, 1183, 1537, 1546, 2100
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	2049
HaeII	RGCGCY	2 cut(s)	583, 624
HapII	CCGG	3 cut(s)	852, 957, 1436
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	9 cut(s)	380, 425, 582, 623, 678, 1184, 1538, 1547, 2101
Hin1I	GRCGYC	2 cut(s)	199, 621
Hin6I	GCGC	9 cut(s)	378, 423, 580, 621, 676, 1182, 1536, 1545, 2099
HinP1I	GCGC	9 cut(s)	378, 423, 580, 621, 676, 1182, 1536, 1545, 2099
HincII	GTYRAC	2 cut(s)	706, 1675
HindII	GTYRAC	2 cut(s)	706, 1675
HinfI	GANTC	6 cut(s)	172, 290, 752, 788, 1082, 1428
HpaII	CCGG	3 cut(s)	852, 957, 1436
HphI	GGTGA	6 cut(s)	247, 592, 724, 1438, 1615, 1907
Hpy166II	GTNNAC	5 cut(s)	706, 874, 1640, 1675, 1977
Hpy188III	TCNNGA	7 cut(s)	192, 646, 1121, 1354, 1385, 1564, 2066
Hpy8I	GTNNAC	5 cut(s)	706, 874, 1640, 1675, 1977
Hpy99I	CGWCG	3 cut(s)	201, 467, 1762
HpyAV	CCTTC	8 cut(s)	48, 268, 643, 887, 995, 1051, 1899, 1936
HpyCH4III	ACNGT	5 cut(s)	686, 1265, 1382, 1444, 2094
HpyCH4IV	ACGT	1 cut(s)	1973
HpyF3I	CTNAG	6 cut(s)	846, 940, 1422, 1632, 1914, 2123
HpySE526I	ACGT	1 cut(s)	1973
Hsp92I	GRCGYC	2 cut(s)	199, 621
HspAI	GCGC	9 cut(s)	378, 423, 580, 621, 676, 1182, 1536, 1545, 2099
KasI	GGCGCC	1 cut(s)	620
KroI	GCCGGC	1 cut(s)	851
KroNI	GCCGGC	1 cut(s)	853
Ksp22I	TGATCA	3 cut(s)	717, 1387, 1566
Kzo9I	GATC	4 cut(s)	717, 1387, 1566, 2126
LguI	GCTCTTC	3 cut(s)	824, 1100, 1307
LmnI	GCTCC	6 cut(s)	480, 548, 698, 743, 1582, 1807
Lsp1109I	GCAGC	7 cut(s)	100, 119, 208, 1234, 1534, 1597, 2045
LweI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
MaeI	CTAG	4 cut(s)	881, 1023, 1212, 2079
MaeII	ACGT	1 cut(s)	1973
MaeIII	GTNAC	6 cut(s)	118, 686, 1444, 1654, 1969, 2088
MalI	GATC	4 cut(s)	719, 1389, 1568, 2128
MbiI	CCGCTC	4 cut(s)	543, 693, 738, 1110
MboI	GATC	4 cut(s)	717, 1387, 1566, 2126
MboII	GAAGA	9 cut(s)	150, 297, 429, 811, 1117, 1324, 1633, 1910, 2051
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	2126
MhlI	GDGCHC	4 cut(s)	631, 876, 911, 1131
MlsI	TGGCCA	1 cut(s)	813
MluNI	TGGCCA	1 cut(s)	813
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	797
MmeI	TCCRAC	6 cut(s)	83, 356, 465, 720, 1401, 1785
Mox20I	TGGCCA	1 cut(s)	813
MroNI	GCCGGC	1 cut(s)	851
MscI	TGGCCA	1 cut(s)	813
MseI	TTAA	4 cut(s)	179, 1779, 1850, 1880
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	813
MspA1I	CMGCKG	2 cut(s)	113, 361
MspI	CCGG	3 cut(s)	852, 957, 1436
MspR9I	CCNGG	7 cut(s)	21, 680, 866, 893, 1018, 1436, 1450
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	1168
MvaI	CCWGG	6 cut(s)	21, 680, 866, 893, 1018, 1450
MvnI	CGCG	2 cut(s)	378, 1160
NaeI	GCCGGC	1 cut(s)	853
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	1 cut(s)	1436
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	4 cut(s)	717, 1387, 1566, 2126
NgoMIV	GCCGGC	1 cut(s)	851
NheI	GCTAGC	1 cut(s)	1211
NlaIV	GGNNCC	5 cut(s)	247, 476, 622, 641, 2025
NmeAIII	GCCGAG	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	1444
NspI	RCATGY	1 cut(s)	676
PaeI	GCATGC	1 cut(s)	676
PaeR7I	CTCGAG	2 cut(s)	190, 644
PagI	TCATGA	2 cut(s)	1353, 1563
PceI	AGGCCT	2 cut(s)	860, 1919
PciSI	GCTCTTC	3 cut(s)	824, 1100, 1307
PcsI	WCGNNNNNNNCGW	3 cut(s)	348, 543, 642
PctI	GAATGC	1 cut(s)	1168
PdiI	GCCGGC	1 cut(s)	853
PfeI	GAWTC	5 cut(s)	172, 290, 752, 1082, 1428
PflFI	GACNNNGTC	2 cut(s)	701, 1442
PleI	GAGTC	1 cut(s)	796
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	796
Ppu21I	YACGTR	1 cut(s)	1974
PpuMI	RGGWCCY	1 cut(s)	640
PshBI	ATTAAT	1 cut(s)	1779
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	6 cut(s)	19, 678, 864, 891, 1016, 1448
PspEI	GGTNACC	1 cut(s)	686
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	6 cut(s)	19, 678, 864, 891, 1016, 1448
PspN4I	GGNNCC	5 cut(s)	247, 476, 622, 641, 2025
PspPI	GGNCC	5 cut(s)	245, 364, 640, 652, 889
PspPPI	RGGWCCY	1 cut(s)	640
PstI	CTGCAG	1 cut(s)	1741
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	2126
PsyI	GACNNNGTC	2 cut(s)	701, 1442
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	2 cut(s)	1766, 1937
RsaNI	GTAC	2 cut(s)	1765, 1936
RseI	CAYNNNNRTG	1 cut(s)	81
SapI	GCTCTTC	3 cut(s)	824, 1100, 1307
SaqAI	TTAA	4 cut(s)	179, 1779, 1850, 1880
Sau3AI	GATC	4 cut(s)	717, 1387, 1566, 2126
Sau96I	GGNCC	5 cut(s)	245, 364, 640, 652, 889
SchI	GAGTC	1 cut(s)	797
ScrFI	CCNGG	7 cut(s)	21, 680, 866, 893, 1018, 1436, 1450
SduI	GDGCHC	4 cut(s)	631, 876, 911, 1131
SfaNI	GCATC	5 cut(s)	1066, 1141, 1404, 1614, 1696
SfcI	CTRYAG	3 cut(s)	709, 775, 1737
SfiI	GGCCNNNNNGGCC	1 cut(s)	857
SfoI	GGCGCC	1 cut(s)	622
Sfr274I	CTCGAG	2 cut(s)	190, 644
SinI	GGWCC	2 cut(s)	640, 889
SlaI	CTCGAG	2 cut(s)	190, 644
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	4 cut(s)	190, 410, 644, 904
SmoI	CTYRAG	4 cut(s)	190, 410, 644, 904
SnaBI	TACGTA	1 cut(s)	1974
SphI	GCATGC	1 cut(s)	676
SseBI	AGGCCT	2 cut(s)	860, 1919
SspDI	GGCGCC	1 cut(s)	620
SspMI	CTAG	4 cut(s)	881, 1023, 1212, 2079
StuI	AGGCCT	2 cut(s)	860, 1919
StyD4I	CCNGG	7 cut(s)	19, 678, 864, 891, 1016, 1434, 1448
StyI	CCWWGG	3 cut(s)	885, 945, 1863
TaaI	ACNGT	5 cut(s)	686, 1265, 1382, 1444, 2094
TaiI	ACGT	1 cut(s)	1976
TaqI	TCGA	4 cut(s)	26, 191, 342, 645
TatI	WGTACW	2 cut(s)	1764, 1935
TauI	GCSGC	4 cut(s)	113, 204, 227, 543
TfiI	GAWTC	5 cut(s)	172, 290, 752, 1082, 1428
Tru1I	TTAA	4 cut(s)	179, 1779, 1850, 1880
Tru9I	TTAA	4 cut(s)	179, 1779, 1850, 1880
TscAI	CASTG	5 cut(s)	21, 904, 1324, 1821, 2037
TseFI	GTSAC	1 cut(s)	1444
TseI	GCWGC	7 cut(s)	107, 113, 221, 1222, 1522, 1585, 2058
Tsp45I	GTSAC	1 cut(s)	1444
TspDTI	ATGAA	8 cut(s)	117, 1325, 1745, 1760, 1955, 2003, 2052, 2126
TspGWI	ACGGA	1 cut(s)	1991
TspRI	CASTG	5 cut(s)	21, 904, 1324, 1821, 2037
Tth111I	GACNNNGTC	2 cut(s)	701, 1442
VneI	GTGCAC	1 cut(s)	872
VpaK11BI	GGWCC	2 cut(s)	640, 889
VspI	ATTAAT	1 cut(s)	1779
XagI	CCTNNNNNAGG	2 cut(s)	647, 1408
XapI	RAATTY	2 cut(s)	952, 2012
XceI	RCATGY	1 cut(s)	676
XhoI	CTCGAG	2 cut(s)	190, 644
XmiI	GTMKAC	1 cut(s)	1976
XspI	CTAG	4 cut(s)	881, 1023, 1212, 2079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.