pycom08g01010

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006511
Physical Location & Seq
Reverse (-)
784531 .. 786525
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 885 bp
ATGGCTCGATTACCATCATTGTTAATTTCTCTGTTAACCATCCTGGGGCTACAAACATCAGGTGTTGTTTCAAGGACATTCACAATGGAGAACAAGTGCGACTACACAGTGTGGCCGGGCATTCTCACCAACGCCGGCGTCTCACCTCTTCCGACCACCGGCTTCGCCCTCGCAAAGGGCGAAACGAAAACTATCTCCGCCCCAGCCTCGTGGGGCGGCCGCTTCTGGGGCCGAACCCTCTGCTCCCACGACTCCGCCGGCAAATTCTCCTGCCTCACCGCCGACTGCGGCTCAGGAAAATTAGAATGCTCAGGCAACGGAGCCGCCCCGCCCGCCACTCTCGCTGAATTCACACTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTCAGCCTCGTGGACGGGTACAACCTCCCAATGCTGGTGGTCCCCAATGGCGGCACTGGGACCAACTGTACGAACACCGGCTGCGTTACCGACCTCAACACCATCTGCCCTTCCGATCTCAAGGTCACCAGTGCCGACGGAGGTGAAGCAGTCGCGTGCAAGAGCGCGTGCGAGGCGTTCGCTCAGCCGCAGTACTGTTGCAGCGGCGCCTACGGTTCACCCGACACTTGCAAGCCCTCTCAATACTCTCAGATTTTCAAGAGCGCGTGCCCAAAAGCATACAGTTACGCTTACGACGACAAGACCAGCACCTTCACATGCGCCGGTGGCGACTACACCATCATCTTCTGCCCATCGCCTAGCACCAGGTTTTTTCCGTTACGTCGGTTTAACTCAACGGAATATCCGAAAGCCAGAAAGCGTCACAGGACAACACACAGCCGCAGCCGACAACCACACCGCCGTCGACAACCACCTCAACCTCGCCGCAAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

295

Amino Acids

31.52

Weight (kDa)

8.99

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 31 - 247 3.6e-85 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 853
AccII CGCG 3 cut(s) 542, 554, 653
AcoI YGGCCR 2 cut(s) 113, 217
AcsI RAATTY 2 cut(s) 263, 347
AcyI GRCGYC 3 cut(s) 138, 387, 594
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 3 cut(s) 407, 457, 581
AfiI CCNNNNNNNGG 6 cut(s) 45, 158, 175, 226, 421, 437
AgsI TTSAA 2 cut(s) 72, 646
AjnI CCWGG 2 cut(s) 42, 752
Alw26I GTCTC 1 cut(s) 145
AoxI GGCC 3 cut(s) 113, 217, 229
ApeKI GCWGC 3 cut(s) 468, 588, 831
ApoI RAATTY 2 cut(s) 263, 347
AspLEI GCGC 4 cut(s) 554, 596, 653, 710
AspS9I GGNCC 3 cut(s) 229, 427, 447
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 6 cut(s) 118, 135, 268, 505, 542, 597
AvaII GGWCC 2 cut(s) 427, 447
BaeGI GKGCMC 1 cut(s) 659
BanI GGYRCC 1 cut(s) 593
BauI CACGAG 2 cut(s) 208, 395
BbvI GCAGC 3 cut(s) 455, 600, 843
BccI CCATC 5 cut(s) 22, 47, 497, 734, 748
BceAI ACGGC 2 cut(s) 376, 834
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BciT130I CCWGG 2 cut(s) 44, 754
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 597
BlpI GCTNAGC 1 cut(s) 570
BmcAI AGTACT 1 cut(s) 581
Bme1390I CCNGG 3 cut(s) 44, 117, 754
Bme18I GGWCC 2 cut(s) 427, 447
BmgT120I GGNCC 3 cut(s) 229, 427, 447
BmiI GGNNCC 6 cut(s) 230, 322, 364, 429, 448, 595
BmrFI CCNGG 3 cut(s) 44, 117, 754
BmrI ACTGGG 1 cut(s) 453
BmuI ACTGGG 1 cut(s) 453
Bpu10I CCTNAGC 2 cut(s) 292, 310
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 13
BsaHI GRCGYC 3 cut(s) 138, 387, 594
BsaJI CCNNGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 158, 175, 226, 421, 437
Bse118I RCCGGY 5 cut(s) 134, 158, 257, 464, 710
Bse1I ACTGG 2 cut(s) 448, 516
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 2 cut(s) 44, 754
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 6 cut(s) 45, 158, 175, 226, 421, 437
BseMII CTCAG 4 cut(s) 306, 324, 584, 650
BseNI ACTGG 2 cut(s) 448, 516
BseSI GKGCMC 1 cut(s) 659
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 455, 600, 843
BseYI CCCAGC 1 cut(s) 202
Bsh1236I CGCG 3 cut(s) 542, 554, 653
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 3 cut(s) 115, 219, 231
BshNI GGYRCC 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 220
BsiSI CCGG 7 cut(s) 116, 135, 159, 258, 366, 465, 711
BslFI GGGAC 2 cut(s) 413, 460
BslI CCNNNNNNNGG 6 cut(s) 45, 158, 175, 226, 421, 437
BsmAI GTCTC 1 cut(s) 145
BsmBI CGTCTC 1 cut(s) 145
BsmFI GGGAC 2 cut(s) 413, 460
BsmI GAATGC 2 cut(s) 120, 311
BsnI GGCC 3 cut(s) 115, 219, 231
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 1 cut(s) 502
Bsp1720I GCTNAGC 1 cut(s) 570
BspANI GGCC 3 cut(s) 115, 219, 231
BspCNI CTCAG 4 cut(s) 305, 323, 583, 649
BspFNI CGCG 3 cut(s) 542, 554, 653
BspLI GGNNCC 6 cut(s) 230, 322, 364, 429, 448, 595
BspT107I GGYRCC 1 cut(s) 593
BsrFI RCCGGY 5 cut(s) 134, 158, 257, 464, 710
BsrI ACTGG 2 cut(s) 448, 516
BssAI RCCGGY 5 cut(s) 134, 158, 257, 464, 710
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 3 cut(s) 138, 387, 594
BssSI CACGAG 2 cut(s) 208, 395
Bst2BI CACGAG 2 cut(s) 208, 395
Bst2UI CCWGG 2 cut(s) 44, 754
Bst4CI ACNGT 5 cut(s) 109, 455, 584, 602, 671
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 3 cut(s) 138, 387, 594
BstC8I GCNNGC 8 cut(s) 136, 259, 333, 371, 544, 556, 620, 655
BstDEI CTNAG 4 cut(s) 292, 310, 570, 636
BstEII GGTNACC 1 cut(s) 511
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 3 cut(s) 542, 554, 653
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 4 cut(s) 554, 596, 653, 710
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 502
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 5 cut(s) 228, 332, 341, 560, 714
BstNI CCWGG 2 cut(s) 44, 754
BstNSI RCATGY 1 cut(s) 708
BstPI GGTNACC 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 42, 115, 752
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 3 cut(s) 542, 554, 653
BstV1I GCAGC 3 cut(s) 455, 600, 843
BstXI CCANNNNNNTGG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 3 cut(s) 115, 219, 231
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 114, 441, 523
Cac8I GCNNGC 8 cut(s) 136, 259, 333, 371, 544, 556, 620, 655
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 4 cut(s) 554, 596, 653, 710
Cfr10I RCCGGY 5 cut(s) 134, 158, 257, 464, 710
Cfr13I GGNCC 3 cut(s) 229, 427, 447
CseI GACGC 2 cut(s) 127, 797
CsiI ACCWGGT 1 cut(s) 752
Csp6I GTAC 3 cut(s) 406, 456, 580
CspCI CAANNNNNGTGG 2 cut(s) 405, 440
CviAII CATG 1 cut(s) 705
CviQI GTAC 3 cut(s) 406, 456, 580
DdeI CTNAG 4 cut(s) 292, 310, 570, 636
DinI GGCGCC 1 cut(s) 595
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 113, 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 2 cut(s) 187, 244
EclXI CGGCCG 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 427, 447
Eco52I CGGCCG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 511
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO65I GGTNACC 1 cut(s) 511
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 2 cut(s) 42, 752
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 1 cut(s) 708
FaiI YATR 2 cut(s) 667, 706
FaqI GGGAC 2 cut(s) 413, 460
FatI CATG 1 cut(s) 704
FauI CCCGC 3 cut(s) 336, 340, 362
FblI GTMKAC 1 cut(s) 853
FokI GGATG 1 cut(s) 26
FspBI CTAG 1 cut(s) 747
GlaI GCGC 4 cut(s) 553, 595, 652, 709
GsaI CCCAGC 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 3 cut(s) 115, 219, 231
HapII CCGG 7 cut(s) 116, 135, 159, 258, 366, 465, 711
HgaI GACGC 2 cut(s) 127, 797
HhaI GCGC 4 cut(s) 554, 596, 653, 710
Hin1I GRCGYC 3 cut(s) 138, 387, 594
Hin1II CATG 1 cut(s) 708
Hin6I GCGC 4 cut(s) 552, 594, 651, 708
HinP1I GCGC 4 cut(s) 552, 594, 651, 708
HincII GTYRAC 2 cut(s) 36, 854
HindII GTYRAC 2 cut(s) 36, 854
HinfI GANTC 1 cut(s) 251
HpaI GTTAAC 1 cut(s) 36
HpaII CCGG 7 cut(s) 116, 135, 159, 258, 366, 465, 711
HphI GGTGA 6 cut(s) 118, 135, 268, 505, 542, 597
Hpy166II GTNNAC 4 cut(s) 36, 400, 605, 854
Hpy188I TCNGA 4 cut(s) 153, 502, 639, 795
Hpy188III TCNNGA 2 cut(s) 294, 646
Hpy8I GTNNAC 4 cut(s) 36, 400, 605, 854
Hpy99I CGWCG 6 cut(s) 362, 389, 527, 686, 774, 855
HpyAV CCTTC 2 cut(s) 507, 709
HpyCH4III ACNGT 5 cut(s) 109, 455, 584, 602, 671
HpyCH4IV ACGT 2 cut(s) 387, 769
HpyCH4V TGCA 3 cut(s) 546, 588, 618
HpyF10VI GCNNNNNNNGC 5 cut(s) 228, 332, 341, 560, 714
HpyF3I CTNAG 4 cut(s) 292, 310, 570, 636
HpySE526I ACGT 2 cut(s) 387, 769
Hsp92I GRCGYC 3 cut(s) 138, 387, 594
Hsp92II CATG 1 cut(s) 708
HspAI GCGC 4 cut(s) 552, 594, 651, 708
KasI GGCGCC 1 cut(s) 593
KroI GCCGGC 2 cut(s) 134, 257
KroNI GCCGGC 2 cut(s) 136, 259
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 502
LmnI GCTCC 3 cut(s) 248, 320, 368
Lsp1109I GCAGC 3 cut(s) 455, 600, 843
MabI ACCWGGT 1 cut(s) 752
MaeI CTAG 1 cut(s) 747
MaeII ACGT 2 cut(s) 387, 769
MaeIII GTNAC 5 cut(s) 472, 511, 671, 765, 809
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 3 cut(s) 140, 373, 724
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 4 cut(s) 24, 263, 299, 347
Mly113I GGCGCC 1 cut(s) 594
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 176
MreI CGCCGGCG 1 cut(s) 134
MroNI GCCGGC 2 cut(s) 134, 257
MseI TTAA 3 cut(s) 23, 35, 777
MspA1I CMGCKG 1 cut(s) 591
MspI CCGG 7 cut(s) 116, 135, 159, 258, 366, 465, 711
MspR9I CCNGG 3 cut(s) 44, 117, 754
Mva1269I GAATGC 2 cut(s) 120, 311
MvaI CCWGG 2 cut(s) 44, 754
MvnI CGCG 3 cut(s) 542, 554, 653
MwoI GCNNNNNNNGC 5 cut(s) 228, 332, 341, 560, 714
NaeI GCCGGC 2 cut(s) 136, 259
NarI GGCGCC 1 cut(s) 594
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 502
NgoMIV GCCGGC 2 cut(s) 134, 257
NlaIII CATG 1 cut(s) 708
NlaIV GGNNCC 6 cut(s) 230, 322, 364, 429, 448, 595
NmuCI GTSAC 2 cut(s) 511, 809
NotI GCGGCCGC 1 cut(s) 217
NspI RCATGY 1 cut(s) 708
PcsI WCGNNNNNNNCGW 5 cut(s) 177, 393, 606, 681, 791
PctI GAATGC 2 cut(s) 120, 311
PdiI GCCGGC 2 cut(s) 136, 259
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 42, 752
PspEI GGTNACC 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 202
PspGI CCWGG 2 cut(s) 42, 752
PspN4I GGNNCC 6 cut(s) 230, 322, 364, 429, 448, 595
PspPI GGNCC 3 cut(s) 229, 427, 447
RsaI GTAC 3 cut(s) 407, 457, 581
RsaNI GTAC 3 cut(s) 406, 456, 580
SalI GTCGAC 1 cut(s) 852
SaqAI TTAA 3 cut(s) 23, 35, 777
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 3 cut(s) 229, 427, 447
ScaI AGTACT 1 cut(s) 581
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 3 cut(s) 44, 117, 754
SduI GDGCHC 1 cut(s) 659
SexAI ACCWGGT 1 cut(s) 752
SfoI GGCGCC 1 cut(s) 595
SgrAI CRCCGGYG 2 cut(s) 134, 710
SinI GGWCC 2 cut(s) 427, 447
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 4 cut(s) 24, 263, 299, 347
SspDI GGCGCC 1 cut(s) 593
SspMI CTAG 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 42, 115, 752
TaaI ACNGT 5 cut(s) 109, 455, 584, 602, 671
TaiI ACGT 2 cut(s) 390, 772
TaqI TCGA 4 cut(s) 7, 357, 384, 853
TasI AATT 4 cut(s) 24, 263, 299, 347
TatI WGTACW 1 cut(s) 579
TauI GCSGC 9 cut(s) 219, 222, 291, 326, 441, 577, 594, 831, 876
Tru1I TTAA 3 cut(s) 23, 35, 777
Tru9I TTAA 3 cut(s) 23, 35, 777
TscAI CASTG 3 cut(s) 114, 448, 523
TseFI GTSAC 2 cut(s) 511, 809
TseI GCWGC 3 cut(s) 468, 588, 831
Tsp45I GTSAC 2 cut(s) 511, 809
TspGWI ACGGA 4 cut(s) 333, 540, 753, 800
TspRI CASTG 3 cut(s) 114, 448, 523
VpaK11BI GGWCC 2 cut(s) 427, 447
XagI CCTNNNNNAGG 1 cut(s) 173
XapI RAATTY 2 cut(s) 263, 347
XceI RCATGY 1 cut(s) 708
XmiI GTMKAC 1 cut(s) 853
XspI CTAG 1 cut(s) 747
ZraI GACGTC 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.