pycom08g01030

thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006511
Physical Location & Seq
Reverse (-)
800511 .. 801374
864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 762 bp
ATGGCTCGATTACCACCATCATTGTTAATTTCTCTGTTAATCATCCTGTGGCTACAAACATCAGATGTTGTTTCAAGGACATTCACAATGGAGAACAAGTGCGACTACACAGTGTGGCCGGGGATTCTCACCAACGCCGGCGTCTCACCTCTTCCAACCACCGGCTTCGCCCTCCAAAAGGGCGAAACGAAAACTATCTCCGCCCCAGCCTCGTGGGGCGGCCGCTTCTGGGGCCGAACCTTCTGCTCCCACGACTCTGCCGGCAAATTCTCTTGCCTCACAGCCGACTGCGGCTCAGGAAAGTTAGAATGCTCAGGCAACGGAGCCACCCCGCCCGCCACTCTCGCTGAATTCACACTCGACGGCGCCGGCGGGCTTGATTTCTTCGACGTCAGCCTTGTGGACGGGTACAACCTCCCTATGCTGGTGGTCCCTGGTGGCGGCACCGGGACCAACTGTACGAACACCGGCTGCGTTACCGACCTCAACACCAGCTGCCCTTCCGACCTCAAGGTCACCGGTGCCGACGGAGCTGAAGCAATCGCGTGCAAGAGCGCGTGCGAGGTGTTCGGCCAGCCGGAGTACTGTTGTAGCGGCGCGTACGGTTCTCAGGACACATGCAAGCCCTCTCAATATTCTCAGATTTTCAAGAGCGCGTGCCCGTACGCATACAGTTACGCTTACGACGACAAGAACAGCACCTTCACTTGCGCCGGTGGCGACTACACCATCATCTTCTGCCCATCGCCTAGCACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

254

Amino Acids

26.54

Weight (kDa)

4.62

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 32 - 248 7.4e-84 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
AatII GACGTC 1 cut(s) 393
AccB1I GGYRCC 3 cut(s) 365, 443, 521
AccII CGCG 4 cut(s) 545, 557, 599, 656
AciI CCGC 9 cut(s) 201, 219, 223, 291, 332, 336, 372, 441, 594
AcoI YGGCCR 3 cut(s) 116, 220, 571
AcsI RAATTY 2 cut(s) 266, 350
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 3 cut(s) 141, 366, 390
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 5 cut(s) 410, 460, 584, 602, 665
AfiI CCNNNNNNNGG 5 cut(s) 161, 178, 229, 424, 440
AgeI ACCGGT 1 cut(s) 518
AgsI TTSAA 2 cut(s) 75, 649
AjnI CCWGG 2 cut(s) 433, 755
AluBI AGCT 2 cut(s) 495, 533
AluI AGCT 2 cut(s) 495, 533
Alw26I GTCTC 1 cut(s) 148
AoxI GGCC 4 cut(s) 116, 220, 232, 571
ApeKI GCWGC 2 cut(s) 471, 495
ApoI RAATTY 2 cut(s) 266, 350
AsiGI ACCGGT 1 cut(s) 518
AspLEI GCGC 5 cut(s) 368, 557, 599, 656, 713
AspS9I GGNCC 3 cut(s) 232, 430, 450
AsuC2I CCSGG 2 cut(s) 120, 448
AsuHPI GGTGA 3 cut(s) 121, 138, 508
AvaII GGWCC 2 cut(s) 430, 450
BaeGI GKGCMC 1 cut(s) 662
BanI GGYRCC 3 cut(s) 365, 443, 521
BauI CACGAG 1 cut(s) 211
BbvI GCAGC 2 cut(s) 458, 482
BccI CCATC 3 cut(s) 25, 737, 751
BceAI ACGGC 1 cut(s) 379
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BciT130I CCWGG 2 cut(s) 435, 757
BcnI CCSGG 2 cut(s) 120, 448
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 369
BisI GCNGC 7 cut(s) 220, 223, 292, 442, 472, 496, 595
BlsI GCNGC 7 cut(s) 221, 224, 293, 443, 473, 497, 596
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 4 cut(s) 120, 435, 448, 757
Bme18I GGWCC 2 cut(s) 430, 450
BmgT120I GGNCC 3 cut(s) 232, 430, 450
BmiI GGNNCC 7 cut(s) 233, 325, 367, 432, 445, 451, 523
BmrFI CCNGG 4 cut(s) 120, 435, 448, 757
Bpu10I CCTNAGC 2 cut(s) 295, 313
BpuEI CTTGAG 1 cut(s) 494
BpuMI CCSGG 2 cut(s) 120, 448
BsaHI GRCGYC 3 cut(s) 141, 366, 390
BsaJI CCNNGG 2 cut(s) 119, 433
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 178, 229, 424, 440
Bse118I RCCGGY 7 cut(s) 137, 161, 260, 368, 467, 518, 713
BseBI CCWGG 2 cut(s) 435, 757
BseDI CCNNGG 2 cut(s) 119, 433
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 5 cut(s) 161, 178, 229, 424, 440
BseMII CTCAG 4 cut(s) 309, 327, 623, 653
BseSI GKGCMC 1 cut(s) 662
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 458, 482
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 4 cut(s) 545, 557, 599, 656
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 4 cut(s) 118, 222, 234, 573
BshNI GGYRCC 3 cut(s) 365, 443, 521
BshTI ACCGGT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 223
BsiWI CGTACG 2 cut(s) 600, 663
BslFI GGGAC 2 cut(s) 416, 463
BslI CCNNNNNNNGG 5 cut(s) 161, 178, 229, 424, 440
BsmAI GTCTC 1 cut(s) 148
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 416, 463
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 4 cut(s) 118, 222, 234, 573
Bsp1286I GDGCHC 1 cut(s) 662
BspACI CCGC 9 cut(s) 201, 219, 223, 291, 332, 336, 372, 441, 594
BspANI GGCC 4 cut(s) 118, 222, 234, 573
BspCNI CTCAG 4 cut(s) 308, 326, 622, 652
BspFNI CGCG 4 cut(s) 545, 557, 599, 656
BspLI GGNNCC 7 cut(s) 233, 325, 367, 432, 445, 451, 523
BspT107I GGYRCC 3 cut(s) 365, 443, 521
BsrFI RCCGGY 7 cut(s) 137, 161, 260, 368, 467, 518, 713
BssAI RCCGGY 7 cut(s) 137, 161, 260, 368, 467, 518, 713
BssECI CCNNGG 2 cut(s) 119, 433
BssNI GRCGYC 3 cut(s) 141, 366, 390
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 435, 757
Bst4CI ACNGT 5 cut(s) 112, 458, 587, 605, 674
Bst6I CTCTTC 1 cut(s) 156
BstACI GRCGYC 3 cut(s) 141, 366, 390
BstDEI CTNAG 4 cut(s) 295, 313, 609, 639
BstEII GGTNACC 1 cut(s) 514
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 4 cut(s) 545, 557, 599, 656
BstH2I RGCGCY 1 cut(s) 369
BstHHI GCGC 5 cut(s) 368, 557, 599, 656, 713
BstMAI GTCTC 1 cut(s) 148
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 4 cut(s) 231, 344, 530, 717
BstNI CCWGG 2 cut(s) 435, 757
BstNSI RCATGY 1 cut(s) 621
BstPI GGTNACC 1 cut(s) 514
BstSCI CCNGG 4 cut(s) 118, 433, 446, 755
BstSLI GKGCMC 1 cut(s) 662
BstUI CGCG 4 cut(s) 545, 557, 599, 656
BstV1I GCAGC 2 cut(s) 458, 482
BstXI CCANNNNNNTGG 1 cut(s) 213
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 4 cut(s) 118, 222, 234, 573
BtgZI GCGATG 1 cut(s) 729
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 117
CciNI GCGGCCGC 1 cut(s) 220
CfoI GCGC 5 cut(s) 368, 557, 599, 656, 713
Cfr10I RCCGGY 7 cut(s) 137, 161, 260, 368, 467, 518, 713
Cfr13I GGNCC 3 cut(s) 232, 430, 450
CseI GACGC 1 cut(s) 130
CsiI ACCWGGT 1 cut(s) 755
Csp6I GTAC 5 cut(s) 409, 459, 583, 601, 664
CspAI ACCGGT 1 cut(s) 518
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 1 cut(s) 618
CviQI GTAC 5 cut(s) 409, 459, 583, 601, 664
DdeI CTNAG 4 cut(s) 295, 313, 609, 639
DinI GGCGCC 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 114
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
EaeI YGGCCR 3 cut(s) 116, 220, 571
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 430, 450
Eco52I CGGCCG 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 555
Eco91I GGTNACC 1 cut(s) 514
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO65I GGTNACC 1 cut(s) 514
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 433, 755
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 1 cut(s) 621
FaiI YATR 3 cut(s) 422, 619, 670
FaqI GGGAC 2 cut(s) 416, 463
FatI CATG 1 cut(s) 617
FauI CCCGC 3 cut(s) 339, 343, 365
Fnu4HI GCNGC 7 cut(s) 220, 223, 292, 442, 472, 496, 595
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 7 cut(s) 220, 223, 292, 442, 472, 496, 595
FspBI CTAG 1 cut(s) 750
GlaI GCGC 5 cut(s) 367, 556, 598, 655, 712
GluI GCNGC 7 cut(s) 220, 223, 292, 442, 472, 496, 595
GsaI CCCAGC 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 369
HaeIII GGCC 4 cut(s) 118, 222, 234, 573
HgaI GACGC 1 cut(s) 130
HhaI GCGC 5 cut(s) 368, 557, 599, 656, 713
Hin1I GRCGYC 3 cut(s) 141, 366, 390
Hin1II CATG 1 cut(s) 621
Hin6I GCGC 5 cut(s) 366, 555, 597, 654, 711
HinP1I GCGC 5 cut(s) 366, 555, 597, 654, 711
HinfI GANTC 2 cut(s) 124, 254
HphI GGTGA 3 cut(s) 121, 138, 508
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 64, 505, 642
Hpy188III TCNNGA 3 cut(s) 297, 611, 649
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 4 cut(s) 365, 392, 530, 689
HpyAV CCTTC 3 cut(s) 250, 510, 712
HpyCH4III ACNGT 5 cut(s) 112, 458, 587, 605, 674
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 549, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 231, 344, 530, 717
HpyF3I CTNAG 4 cut(s) 295, 313, 609, 639
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 3 cut(s) 141, 366, 390
Hsp92II CATG 1 cut(s) 621
HspAI GCGC 5 cut(s) 366, 555, 597, 654, 711
KasI GGCGCC 1 cut(s) 365
KroI GCCGGC 3 cut(s) 137, 260, 368
KroNI GCCGGC 3 cut(s) 139, 262, 370
LmnI GCTCC 3 cut(s) 251, 323, 530
Lsp1109I GCAGC 2 cut(s) 458, 482
MabI ACCWGGT 1 cut(s) 755
MaeI CTAG 1 cut(s) 750
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 475, 514, 674
MboII GAAGA 3 cut(s) 143, 376, 727
MhlI GDGCHC 1 cut(s) 662
MluCI AATT 3 cut(s) 27, 266, 350
Mly113I GGCGCC 1 cut(s) 366
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 179, 528
MnlI CCTC 9 cut(s) 159, 182, 220, 287, 425, 494, 518, 556, 637
MreI CGCCGGCG 2 cut(s) 137, 368
MroNI GCCGGC 3 cut(s) 137, 260, 368
MseI TTAA 2 cut(s) 26, 38
MspA1I CMGCKG 1 cut(s) 495
MspR9I CCNGG 4 cut(s) 120, 435, 448, 757
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 2 cut(s) 435, 757
MvnI CGCG 4 cut(s) 545, 557, 599, 656
MwoI GCNNNNNNNGC 4 cut(s) 231, 344, 530, 717
NaeI GCCGGC 3 cut(s) 139, 262, 370
NarI GGCGCC 1 cut(s) 366
NciI CCSGG 2 cut(s) 120, 448
NgoMIV GCCGGC 3 cut(s) 137, 260, 368
NlaIII CATG 1 cut(s) 621
NlaIV GGNNCC 7 cut(s) 233, 325, 367, 432, 445, 451, 523
NmuCI GTSAC 1 cut(s) 514
NotI GCGGCCGC 1 cut(s) 220
NspI RCATGY 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 314
PdiI GCCGGC 3 cut(s) 139, 262, 370
PfeI GAWTC 1 cut(s) 124
Pfl23II CGTACG 2 cut(s) 600, 663
PinAI ACCGGT 1 cut(s) 518
PkrI GCNGC 7 cut(s) 221, 224, 293, 443, 473, 497, 596
PleI GAGTC 1 cut(s) 248
PluTI GGCGCC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 433, 755
PspEI GGTNACC 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 433, 755
PspLI CGTACG 2 cut(s) 600, 663
PspN4I GGNNCC 7 cut(s) 233, 325, 367, 432, 445, 451, 523
PspPI GGNCC 3 cut(s) 232, 430, 450
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 5 cut(s) 410, 460, 584, 602, 665
RsaNI GTAC 5 cut(s) 409, 459, 583, 601, 664
SaqAI TTAA 2 cut(s) 26, 38
SatI GCNGC 7 cut(s) 220, 223, 292, 442, 472, 496, 595
Sau96I GGNCC 3 cut(s) 232, 430, 450
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 4 cut(s) 120, 435, 448, 757
SduI GDGCHC 1 cut(s) 662
SexAI ACCWGGT 1 cut(s) 755
SfoI GGCGCC 1 cut(s) 367
SgrAI CRCCGGYG 4 cut(s) 137, 368, 518, 713
SinI GGWCC 2 cut(s) 430, 450
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 3 cut(s) 27, 266, 350
SsiI CCGC 9 cut(s) 201, 219, 223, 291, 332, 336, 372, 441, 594
SspDI GGCGCC 1 cut(s) 365
SspI AATATT 1 cut(s) 635
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 4 cut(s) 118, 433, 446, 755
TaaI ACNGT 5 cut(s) 112, 458, 587, 605, 674
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 7, 360, 387
TasI AATT 3 cut(s) 27, 266, 350
TatI WGTACW 1 cut(s) 582
TauI GCSGC 5 cut(s) 222, 225, 294, 444, 597
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 2 cut(s) 26, 38
Tru9I TTAA 2 cut(s) 26, 38
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 471, 495
Tsp45I GTSAC 1 cut(s) 514
TspGWI ACGGA 2 cut(s) 336, 543
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 430, 450
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 266, 350
XceI RCATGY 1 cut(s) 621
XspI CTAG 1 cut(s) 750
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.