pycom08g03430

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Reverse (-)
2674071 .. 2675535
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03430.1

Sequence Viewer

Length: 1143 bp
ATGCTGAAAAATCAGTGTTTAAACAAATATATTACTTTTTACACAAATTTATATCATCCTTTTAATTGGAATGCTGTCTCCATAACAAGACAAACCAATTCACCCGCCATAGTCGCACAGCTCCCACCACCACCAACAAGGGCAATGACGGACTTCTTCGTCGAAGAGGTCACGACGGAGCTCCTGAAAACCTTAATCGCCATCTCCCGCAAATCATGCCACAGCAGAGGAACCGCCGAGCAACTCAAATCCTCAATCGAGGAGCTCCTCCCCATAATTCAAGAAATCAAGTACTCCGGCGTCGAGCTACCGGCCGAACGGCAGTTCCAGCTCAACCGCCTGTCGGAAGTTCTCCAGAACGGCCTCGAACTGGCCCGAAAAGTCCTCGCGTCGCCGCGTTGGAACTTGTACAAGAACGTCCAATTGGCGAAAAAGCTGGAGTCTTTACAGAAGACGGTGTCCAGATTTCTTCAGGGCCCATTGCAGGTCCATATCTTGGCCGACGTCCACCACATTAGGGCGGAGGTGACTCAGCGGTTCGACCGGCTTGATTGGTCAAGCCGGATGATGGAACAGCGGCTTGGGGCCTTAAAGATTGGGACTTGTGTCGGCGGGGGTGGCGGTGGCGGGTGGATGGAGGAAGCTGTGAGGAGGGTGGAGGAGGAAGGGCAGATGAAGTGGGAGGTGAGCAGTTCGGTGGTGTTGGGATTGGGGGTGGGGATGAAGACGGTGAAGGGAATGATTTTTGGGAGGGAGGACTTGAGGGTCGTCGGGATTTGTGGGATTGGTGGCTCTGGAAAAACCACTCTCGCCAGAGAGCTTTGCAAGGATGATCAAGTTAGATCTTATTTCAGTGAGAGAATTCTGTTCCTGACGGTATCACAGTCTGCAGATGTGAACCAGTTGAAGGCCAAGATTGTGCAGTTCATCATGGGGAACCAAGTTCTCAGTCTCAATTCTGTGCTTCCCCAATGGAACTTGCAATACGAGTGGATCACCGCAACGAAAACTCTGGTGGTTTTGGATGATGTGTGGTCACTGGCAGTGCTTGAGCCGCTGCTCGTTAAAATCCCGGGCTGCAAGTTTCTTGTGGTCTCACGTTTCAAATTCCCAACCGTTCCGCTTATGATGTGCAGTTGTTGA

Protein Analysis

381

Amino Acids

42.76

Weight (kDa)

9.2

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 57 - 178 2.6e-11 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 242 - 367 8.1e-16 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 764
AatII GACGTC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 496
AccII CGCG 2 cut(s) 389, 397
AclWI GGATC 1 cut(s) 1001
AcoI YGGCCR 2 cut(s) 312, 498
AcsI RAATTY 3 cut(s) 46, 861, 1106
AcuI CTGAAG 1 cut(s) 455
AcyI GRCGYC 2 cut(s) 300, 504
AfaI GTAC 2 cut(s) 293, 410
AfiI CCNNNNNNNGG 7 cut(s) 343, 370, 484, 496, 517, 568, 907
AgsI TTSAA 3 cut(s) 281, 907, 1105
AjuI GAANNNNNNNTTGG 4 cut(s) 407, 439, 564, 596
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 8 cut(s) 121, 181, 265, 307, 331, 436, 644, 820
AluI AGCT 8 cut(s) 121, 181, 265, 307, 331, 436, 644, 820
Alw21I GWGCWC 2 cut(s) 183, 267
Alw26I GTCTC 3 cut(s) 82, 956, 1099
AlwI GGATC 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 1072
AoxI GGCC 7 cut(s) 312, 361, 372, 475, 498, 585, 909
ApaI GGGCCC 1 cut(s) 479
ApeKI GCWGC 2 cut(s) 1057, 1077
ApoI RAATTY 3 cut(s) 46, 861, 1106
AspS9I GGNCC 5 cut(s) 373, 475, 476, 487, 585
AsuC2I CCSGG 2 cut(s) 1073, 1074
AsuHPI GGTGA 5 cut(s) 93, 538, 697, 742, 988
AvaI CYCGRG 1 cut(s) 1072
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 479
BanII GRGCYC 3 cut(s) 183, 267, 479
BbsI GAAGAC 2 cut(s) 458, 731
Bbv12I GWGCWC 2 cut(s) 183, 267
BbvI GCAGC 2 cut(s) 1044, 1064
BccI CCATC 3 cut(s) 209, 562, 628
BceAI ACGGC 2 cut(s) 335, 376
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 2 cut(s) 1073, 1074
BcoDI GTCTC 3 cut(s) 82, 956, 1099
BfmI CTRYAG 1 cut(s) 888
BfuAI ACCTGC 1 cut(s) 475
BglII AGATCT 1 cut(s) 842
BisI GCNGC 5 cut(s) 395, 578, 1055, 1058, 1078
BlsI GCNGC 5 cut(s) 396, 579, 1056, 1059, 1079
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 1073, 1074
Bme18I GGWCC 1 cut(s) 487
BmeT110I CYCGRG 1 cut(s) 1072
BmgT120I GGNCC 5 cut(s) 373, 475, 476, 487, 585
BmiI GGNNCC 4 cut(s) 232, 477, 586, 938
BmrFI CCNGG 2 cut(s) 1073, 1074
BoxI GACNNNNGTC 1 cut(s) 605
BpiI GAAGAC 2 cut(s) 458, 731
BpmI CTGGAG 2 cut(s) 338, 458
BpuEI CTTGAG 2 cut(s) 781, 1070
BpuMI CCSGG 2 cut(s) 1073, 1074
BsaHI GRCGYC 2 cut(s) 300, 504
BsaI GGTCTC 1 cut(s) 1099
BsaJI CCNNGG 1 cut(s) 1072
Bsc4I CCNNNNNNNGG 7 cut(s) 343, 370, 484, 496, 517, 568, 907
Bse118I RCCGGY 2 cut(s) 310, 543
Bse1I ACTGG 3 cut(s) 375, 901, 1044
Bse3DI GCAATG 2 cut(s) 150, 479
BseDI CCNNGG 1 cut(s) 1072
BseGI GGATG 6 cut(s) 55, 570, 639, 726, 835, 1030
BseLI CCNNNNNNNGG 7 cut(s) 343, 370, 484, 496, 517, 568, 907
BseMI GCAATG 2 cut(s) 150, 479
BseMII CTCAG 2 cut(s) 545, 961
BseNI ACTGG 3 cut(s) 375, 901, 1044
BseRI GAGGAG 4 cut(s) 257, 275, 664, 674
BseSI GKGCMC 1 cut(s) 479
BseX3I CGGCCG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 1044, 1064
BsgI GTGCAG 1 cut(s) 941
Bsh1236I CGCG 2 cut(s) 389, 397
Bsh1285I CGRYCG 2 cut(s) 315, 544
BshFI GGCC 7 cut(s) 314, 363, 374, 477, 500, 587, 911
BsiEI CGRYCG 2 cut(s) 315, 544
BsiHKAI GWGCWC 2 cut(s) 183, 267
BsiHKCI CYCGRG 1 cut(s) 1072
BsiSI CCGG 5 cut(s) 297, 311, 544, 562, 1073
BslFI GGGAC 1 cut(s) 613
BslI CCNNNNNNNGG 7 cut(s) 343, 370, 484, 496, 517, 568, 907
BsmAI GTCTC 3 cut(s) 82, 956, 1099
BsmFI GGGAC 1 cut(s) 613
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 7 cut(s) 314, 363, 374, 477, 500, 587, 911
Bso31I GGTCTC 1 cut(s) 1099
BsoBI CYCGRG 1 cut(s) 1072
Bsp120I GGGCCC 1 cut(s) 475
Bsp1286I GDGCHC 3 cut(s) 183, 267, 479
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 3 cut(s) 832, 842, 993
BspANI GGCC 7 cut(s) 314, 363, 374, 477, 500, 587, 911
BspCNI CTCAG 2 cut(s) 544, 960
BspFNI CGCG 2 cut(s) 389, 397
BspLI GGNNCC 4 cut(s) 232, 477, 586, 938
BspMAI CTGCAG 1 cut(s) 892
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 1 cut(s) 1001
BspTNI GGTCTC 1 cut(s) 1099
BsrDI GCAATG 2 cut(s) 150, 479
BsrFI RCCGGY 2 cut(s) 310, 543
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 3 cut(s) 375, 901, 1044
BssAI RCCGGY 2 cut(s) 310, 543
BssECI CCNNGG 1 cut(s) 1072
BssMI GATC 3 cut(s) 832, 842, 993
BssNI GRCGYC 2 cut(s) 300, 504
Bst4CI ACNGT 5 cut(s) 457, 730, 877, 885, 1117
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 2 cut(s) 300, 504
BstAPI GCANNNNNTGC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 531, 947
BstF5I GGATG 6 cut(s) 55, 570, 639, 726, 835, 1030
BstFNI CGCG 2 cut(s) 389, 397
BstKTI GATC 3 cut(s) 835, 845, 996
BstMAI GTCTC 3 cut(s) 82, 956, 1099
BstMBI GATC 3 cut(s) 832, 842, 993
BstMCI CGRYCG 2 cut(s) 315, 544
BstMWI GCNNNNNNNGC 5 cut(s) 113, 216, 328, 618, 1054
BstPAI GACNNNNGTC 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 1071, 1072
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 389, 397
BstV1I GCAGC 2 cut(s) 1044, 1064
BstV2I GAAGAC 2 cut(s) 458, 731
BstX2I RGATCY 1 cut(s) 842
BstYI RGATCY 1 cut(s) 842
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 7 cut(s) 314, 363, 374, 477, 500, 587, 911
BtsCI GGATG 6 cut(s) 55, 570, 639, 726, 835, 1030
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 4 cut(s) 20, 859, 1037, 1050
BveI ACCTGC 1 cut(s) 475
Cfr10I RCCGGY 2 cut(s) 310, 543
Cfr13I GGNCC 5 cut(s) 373, 475, 476, 487, 585
Cfr9I CCCGGG 1 cut(s) 1072
CseI GACGC 2 cut(s) 289, 378
Csp6I GTAC 2 cut(s) 292, 409
CspCI CAANNNNNGTGG 2 cut(s) 971, 1006
CviAII CATG 2 cut(s) 216, 931
CviQI GTAC 2 cut(s) 292, 409
DdeI CTNAG 2 cut(s) 531, 947
DpnI GATC 3 cut(s) 834, 844, 995
DpnII GATC 3 cut(s) 832, 842, 993
DraI TTTAAA 1 cut(s) 21
DrdI GACNNNNNNGTC 2 cut(s) 158, 764
DseDI GACNNNNNNGTC 2 cut(s) 158, 764
EaeI YGGCCR 2 cut(s) 312, 498
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 536
Ecl136II GAGCTC 2 cut(s) 181, 265
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 3 cut(s) 183, 267, 479
Eco31I GGTCTC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 487
Eco52I CGGCCG 1 cut(s) 312
Eco53kI GAGCTC 2 cut(s) 181, 265
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 1072
EcoICRI GAGCTC 2 cut(s) 181, 265
EcoO109I RGGNCCY 2 cut(s) 475, 585
EcoRI GAATTC 1 cut(s) 861
EcoT38I GRGCYC 3 cut(s) 183, 267, 479
FaeI CATG 2 cut(s) 219, 934
FaiI YATR 9 cut(s) 30, 52, 83, 110, 217, 275, 492, 932, 1127
FaqI GGGAC 1 cut(s) 613
FatI CATG 2 cut(s) 215, 930
FauI CCCGC 4 cut(s) 112, 215, 605, 620
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 395, 578, 1055, 1058, 1078
FokI GGATG 6 cut(s) 42, 577, 646, 733, 842, 1037
FriOI GRGCYC 3 cut(s) 183, 267, 479
Fsp4HI GCNGC 5 cut(s) 395, 578, 1055, 1058, 1078
GluI GCNGC 5 cut(s) 395, 578, 1055, 1058, 1078
GsuI CTGGAG 2 cut(s) 338, 458
HaeIII GGCC 7 cut(s) 314, 363, 374, 477, 500, 587, 911
HapII CCGG 5 cut(s) 297, 311, 544, 562, 1073
HgaI GACGC 2 cut(s) 289, 378
Hin1I GRCGYC 2 cut(s) 300, 504
Hin1II CATG 2 cut(s) 219, 934
HinfI GANTC 2 cut(s) 440, 529
HpaII CCGG 5 cut(s) 297, 311, 544, 562, 1073
HphI GGTGA 5 cut(s) 93, 538, 697, 742, 988
Hpy166II GTNNAC 2 cut(s) 508, 898
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 8 cut(s) 172, 184, 281, 355, 462, 772, 795, 871
Hpy8I GTNNAC 2 cut(s) 508, 898
Hpy99I CGWCG 6 cut(s) 164, 178, 305, 394, 506, 773
HpyAV CCTTC 3 cut(s) 659, 727, 901
HpyCH4III ACNGT 5 cut(s) 457, 730, 877, 885, 1117
HpyCH4IV ACGT 3 cut(s) 417, 504, 1099
HpyCH4V TGCA 7 cut(s) 484, 825, 890, 922, 982, 1080, 1134
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 216, 328, 618, 1054
HpyF3I CTNAG 2 cut(s) 531, 947
HpySE526I ACGT 3 cut(s) 417, 504, 1099
Hsp92I GRCGYC 2 cut(s) 300, 504
Hsp92II CATG 2 cut(s) 219, 934
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 3 cut(s) 832, 842, 993
LmnI GCTCC 5 cut(s) 126, 178, 186, 262, 270
Lsp1109I GCAGC 2 cut(s) 1044, 1064
MaeII ACGT 3 cut(s) 417, 504, 1099
MaeIII GTNAC 3 cut(s) 169, 526, 1035
MalI GATC 3 cut(s) 834, 844, 995
MboI GATC 3 cut(s) 832, 842, 993
MboII GAAGA 5 cut(s) 148, 176, 461, 463, 736
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 3 cut(s) 183, 267, 479
MluCI AATT 8 cut(s) 46, 64, 97, 276, 422, 861, 955, 1106
MlyI GAGTC 2 cut(s) 449, 523
MmeI TCCRAC 2 cut(s) 324, 380
MseI TTAA 5 cut(s) 20, 63, 194, 590, 1065
MspA1I CMGCKG 3 cut(s) 535, 577, 1057
MspI CCGG 5 cut(s) 297, 311, 544, 562, 1073
MspR9I CCNGG 2 cut(s) 1073, 1074
MssI GTTTAAAC 1 cut(s) 21
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 76
MvnI CGCG 2 cut(s) 389, 397
MwoI GCNNNNNNNGC 5 cut(s) 113, 216, 328, 618, 1054
NciI CCSGG 2 cut(s) 1073, 1074
NdeII GATC 3 cut(s) 832, 842, 993
NlaIII CATG 2 cut(s) 219, 934
NlaIV GGNNCC 4 cut(s) 232, 477, 586, 938
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 3 cut(s) 169, 526, 1035
PctI GAATGC 1 cut(s) 76
PflFI GACNNNGTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 496
PkrI GCNGC 5 cut(s) 396, 579, 1056, 1059, 1079
PleI GAGTC 2 cut(s) 448, 523
PmeI GTTTAAAC 1 cut(s) 21
PpsI GAGTC 2 cut(s) 448, 523
PshAI GACNNNNGTC 1 cut(s) 605
Psp124BI GAGCTC 2 cut(s) 183, 267
PspN4I GGNNCC 4 cut(s) 232, 477, 586, 938
PspOMI GGGCCC 1 cut(s) 475
PspPI GGNCC 5 cut(s) 373, 475, 476, 487, 585
PsrI GAACNNNNNNTAC 2 cut(s) 968, 1000
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 842
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 2 cut(s) 293, 410
RsaNI GTAC 2 cut(s) 292, 409
SacI GAGCTC 2 cut(s) 183, 267
SaqAI TTAA 5 cut(s) 20, 63, 194, 590, 1065
SatI GCNGC 5 cut(s) 395, 578, 1055, 1058, 1078
Sau3AI GATC 3 cut(s) 832, 842, 993
Sau96I GGNCC 5 cut(s) 373, 475, 476, 487, 585
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 2 cut(s) 449, 523
ScrFI CCNGG 2 cut(s) 1073, 1074
SduI GDGCHC 3 cut(s) 183, 267, 479
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 487
SmaI CCCGGG 1 cut(s) 1074
SmlI CTYRAG 2 cut(s) 760, 1049
SmoI CTYRAG 2 cut(s) 760, 1049
Sse9I AATT 8 cut(s) 46, 64, 97, 276, 422, 861, 955, 1106
SstI GAGCTC 2 cut(s) 183, 267
StyD4I CCNGG 2 cut(s) 1071, 1072
TaaI ACNGT 5 cut(s) 457, 730, 877, 885, 1117
TaiI ACGT 3 cut(s) 420, 507, 1102
TaqI TCGA 5 cut(s) 162, 258, 303, 366, 540
TasI AATT 8 cut(s) 46, 64, 97, 276, 422, 861, 955, 1106
TatI WGTACW 2 cut(s) 291, 408
TauI GCSGC 3 cut(s) 397, 580, 1057
Tru1I TTAA 5 cut(s) 20, 63, 194, 590, 1065
Tru9I TTAA 5 cut(s) 20, 63, 194, 590, 1065
TscAI CASTG 4 cut(s) 20, 859, 1044, 1050
TseFI GTSAC 3 cut(s) 169, 526, 1035
TseI GCWGC 2 cut(s) 1057, 1077
Tsp45I GTSAC 3 cut(s) 169, 526, 1035
TspDTI ATGAA 3 cut(s) 689, 737, 916
TspGWI ACGGA 2 cut(s) 164, 191
TspMI CCCGGG 1 cut(s) 1072
TspRI CASTG 4 cut(s) 20, 859, 1044, 1050
Tth111I GACNNNGTC 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 496
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 3 cut(s) 46, 861, 1106
XmaI CCCGGG 1 cut(s) 1072
ZraI GACGTC 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.