Rh6CG418500

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
60205157 .. 60207077
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG418500.1

Sequence Viewer

Length: 1155 bp
ATGGCAGTTGCAGACTTCTTCGCCGGAGAGATTATCACGGAGCTCCTGAAGAACCTGATAGCCATATCCAAAAAATCATGGCAGTTCAAAGACAGCGCCAACGGCCTCAAAGACTCCATAGAACAGCTCCTCCCCATAATCCAAGAAATCAAGTACTCCGGCGTCGAGTTGCCGGCCATCCGCCAGTTTCAGCTCGACCGTATCTCGGAGACTCTCCGGAAGGGACATGAGCTGGCCCACAAGGTCCTCCTCTCCTCTCGCTACAACATTTACAAGAACCTCCAATATGCCCGCAAGATGGAGAGGATCGAAAAGACCGTCGCCAAGTTCATCCAGGGCCCATTGCAGGCCCATATCTTGGCCGACGTCCACCACATAAGGTTCCAGACCACCGAGCGCTTCGACCGCCTTGAAGGCTCCAGCTACCGCCTGGAGCAGACGCTCGGCGCTATGAAGATTGGAGCTTGCAGTGGCGGCGGAGGTGTGTCGTGGGTGGAAGAGGCTGTGAGGAGCGTGGAGGAGGAGGGTCGGATGCAATGGGAGAGCAGCAGTGAGTTGGTTTTGGGCTTGGGTTTCGGGTTGAAGAAAGTCAAGGAAATGGTTCTTGGCAGAGATGACTTGTTCGTTGGGATTAGTGGGATTGGCGGCTCGGGAAAAACCACTCTCGTTAAGGAGTTGATTAAGGATGATCATGTTCGATCTTACTTTGGCGAGAGAATCCTGTTCCTAACGGTGTCACAATCTCCGGATACAGAGGATTTGAAGGCCAAGATCTTGGGGTTCATTATGGGGAATCAAGTTTTGAGTCCCAGTTCTGTGCTTCCTCAAATGAACTTTCAGTTTGAATGGAGAAACCCAACAAAGACCCTGGTGGTTTTGGATGATGTTTGGTCACTTTCAACGCTTCAGCCACTGCTTTTCAACCTTCCTGGTTGTAAAACCCTTGTGGTTTCACGTTTCAAATTCCAAACAGTAACAAAAACCACCTATGACGTGGAGTTGCTGGGTGAAGATGAAGCAGTCTCTCTGTTTTGCCACTCTGCTTTTGGCCAAAAGTTCATTCCTCCTGGTGCTGATAAGAAATTGGTCAAGCAGCCGATTACTGATGCCAAGAAGAGAGATAGAACTTCCAAGAGAATGGGACAGGCATTCTGA

Protein Analysis

384

Amino Acids

43.18

Weight (kDa)

8.99

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 9 - 130 1.5e-14 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 196 - 351 2.3e-16 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 369
AccB7I CCANNNNNTGG 1 cut(s) 358
AccIII TCCGGA 2 cut(s) 216, 745
AciI CCGC 7 cut(s) 181, 292, 406, 427, 474, 477, 645
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 3 cut(s) 174, 360, 1048
AcsI RAATTY 1 cut(s) 962
AcuI CTGAAG 2 cut(s) 68, 890
AcyI GRCGYC 2 cut(s) 162, 366
AfaI GTAC 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 205, 298, 346, 358
AgsI TTSAA 8 cut(s) 88, 413, 583, 763, 845, 900, 922, 961
AjiI CACGTC 1 cut(s) 994
AjnI CCWGG 5 cut(s) 333, 429, 867, 928, 1066
AjuI GAANNNNNNNTTGG 4 cut(s) 588, 620, 1044, 1076
AloI GAACNNNNNNTCC 2 cut(s) 114, 146
AluBI AGCT 6 cut(s) 43, 127, 193, 232, 423, 464
AluI AGCT 6 cut(s) 43, 127, 193, 232, 423, 464
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 203, 1027
AlwI GGATC 1 cut(s) 314
AlwNI CAGNNNCTG 1 cut(s) 913
Ama87I CYCGRG 1 cut(s) 649
Aor13HI TCCGGA 2 cut(s) 216, 745
Aor51HI AGCGCT 1 cut(s) 398
AoxI GGCC 8 cut(s) 103, 174, 234, 337, 348, 360, 765, 1048
ApaI GGGCCC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 546, 1093
ApoI RAATTY 1 cut(s) 962
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
Asp700I GAANNNNTTC 1 cut(s) 600
AspLEI GCGC 3 cut(s) 98, 399, 449
AspS9I GGNCC 5 cut(s) 235, 244, 337, 338, 349
AsuHPI GGTGA 1 cut(s) 1019
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 1050
BanII GRGCYC 2 cut(s) 45, 341
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 2 cut(s) 558, 1105
BccI CCATC 2 cut(s) 185, 292
BceAI ACGGC 1 cut(s) 118
BciT130I CCWGG 5 cut(s) 335, 431, 869, 930, 1068
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 2 cut(s) 203, 1027
BfoI RGCGCY 3 cut(s) 99, 400, 450
BfuI GTATCC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 771
BisI GCNGC 4 cut(s) 475, 547, 646, 1094
BlsI GCNGC 4 cut(s) 476, 548, 647, 1095
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 5 cut(s) 335, 431, 869, 930, 1068
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 649
BmgBI CACGTC 1 cut(s) 994
BmgT120I GGNCC 5 cut(s) 235, 244, 337, 338, 349
BmiI GGNNCC 3 cut(s) 339, 383, 418
BmrFI CCNGG 5 cut(s) 335, 431, 869, 930, 1068
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 2 cut(s) 522, 1096
BmuI ACTGGG 1 cut(s) 804
BpmI CTGGAG 2 cut(s) 403, 452
BsaHI GRCGYC 2 cut(s) 162, 366
BsaJI CCNNGG 2 cut(s) 334, 867
BsaWI WCCGGW 2 cut(s) 216, 745
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 298, 346, 358
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 184, 810
Bse3DI GCAATG 2 cut(s) 341, 542
BseAI TCCGGA 2 cut(s) 216, 745
BseBI CCWGG 5 cut(s) 335, 431, 869, 930, 1068
BseDI CCNNGG 2 cut(s) 334, 867
BseGI GGATG 5 cut(s) 177, 330, 537, 691, 886
BseLI CCNNNNNNNGG 4 cut(s) 205, 298, 346, 358
BseMI GCAATG 2 cut(s) 341, 542
BseNI ACTGG 2 cut(s) 184, 810
BseRI GAGGAG 6 cut(s) 119, 239, 244, 523, 533, 536
BseSI GKGCMC 1 cut(s) 341
BseXI GCAGC 2 cut(s) 558, 1105
BseYI CCCAGC 1 cut(s) 1003
Bsh1285I CGRYCG 2 cut(s) 199, 406
BshFI GGCC 8 cut(s) 105, 176, 236, 339, 350, 362, 767, 1050
BsiEI CGRYCG 2 cut(s) 199, 406
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 5 cut(s) 24, 159, 173, 217, 746
BslFI GGGAC 2 cut(s) 237, 792
BslI CCNNNNNNNGG 4 cut(s) 205, 298, 346, 358
BsmAI GTCTC 2 cut(s) 203, 1027
BsmFI GGGAC 2 cut(s) 237, 792
BsmI GAATGC 1 cut(s) 1148
BsnI GGCC 8 cut(s) 105, 176, 236, 339, 350, 362, 767, 1050
BsoBI CYCGRG 1 cut(s) 649
Bsp120I GGGCCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 45, 341
Bsp13I TCCGGA 2 cut(s) 216, 745
Bsp143I GATC 4 cut(s) 306, 688, 698, 771
BspACI CCGC 7 cut(s) 181, 292, 406, 427, 474, 477, 645
BspANI GGCC 8 cut(s) 105, 176, 236, 339, 350, 362, 767, 1050
BspEI TCCGGA 2 cut(s) 216, 745
BspLI GGNNCC 3 cut(s) 339, 383, 418
BspPI GGATC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 341, 542
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 184, 810
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 334, 867
BssMI GATC 4 cut(s) 306, 688, 698, 771
BssNI GRCGYC 2 cut(s) 162, 366
Bst2UI CCWGG 5 cut(s) 335, 431, 869, 930, 1068
Bst4CI ACNGT 4 cut(s) 200, 319, 733, 973
Bst6I CTCTTC 2 cut(s) 492, 1109
BstACI GRCGYC 2 cut(s) 162, 366
BstC8I GCNNGC 5 cut(s) 174, 234, 292, 348, 466
BstF5I GGATG 5 cut(s) 177, 330, 537, 691, 886
BstH2I RGCGCY 3 cut(s) 99, 400, 450
BstHHI GCGC 3 cut(s) 98, 399, 449
BstKTI GATC 4 cut(s) 309, 691, 701, 774
BstMAI GTCTC 2 cut(s) 203, 1027
BstMBI GATC 4 cut(s) 306, 688, 698, 771
BstMCI CGRYCG 2 cut(s) 199, 406
BstMWI GCNNNNNNNGC 4 cut(s) 102, 405, 414, 474
BstNI CCWGG 5 cut(s) 335, 431, 869, 930, 1068
BstSCI CCNGG 5 cut(s) 333, 429, 867, 928, 1066
BstSLI GKGCMC 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 558, 1105
BstX2I RGATCY 1 cut(s) 771
BstXI CCANNNNNNTGG 2 cut(s) 775, 1138
BstYI RGATCY 1 cut(s) 771
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 8 cut(s) 105, 176, 236, 339, 350, 362, 767, 1050
BtrI CACGTC 1 cut(s) 994
BtsCI GGATG 5 cut(s) 177, 330, 537, 691, 886
BtsI GCAGTG 3 cut(s) 475, 556, 911
BtsIMutI CAGTG 3 cut(s) 475, 556, 911
Cac8I GCNNGC 5 cut(s) 174, 234, 292, 348, 466
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 3 cut(s) 98, 399, 449
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 5 cut(s) 235, 244, 337, 338, 349
CseI GACGC 2 cut(s) 151, 448
Csp6I GTAC 1 cut(s) 154
CviAII CATG 3 cut(s) 78, 227, 692
CviQI GTAC 1 cut(s) 154
DpnI GATC 4 cut(s) 308, 690, 700, 773
DpnII GATC 4 cut(s) 306, 688, 698, 771
EaeI YGGCCR 3 cut(s) 174, 360, 1048
Eam1104I CTCTTC 2 cut(s) 492, 1109
EarI CTCTTC 2 cut(s) 492, 1109
EciI GGCGGA 2 cut(s) 170, 492
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 45, 341
Eco47I GGWCC 1 cut(s) 244
Eco47III AGCGCT 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 68, 890
Eco88I CYCGRG 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 2 cut(s) 244, 337
EcoRII CCWGG 5 cut(s) 333, 429, 867, 928, 1066
EcoT38I GRGCYC 2 cut(s) 45, 341
FaeI CATG 3 cut(s) 81, 230, 695
FaqI GGGAC 2 cut(s) 237, 792
FatI CATG 3 cut(s) 77, 226, 691
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 4 cut(s) 475, 547, 646, 1094
FokI GGATG 5 cut(s) 164, 317, 544, 698, 893
FriOI GRGCYC 2 cut(s) 45, 341
Fsp4HI GCNGC 4 cut(s) 475, 547, 646, 1094
GlaI GCGC 3 cut(s) 97, 398, 448
GluI GCNGC 4 cut(s) 475, 547, 646, 1094
GsaI CCCAGC 1 cut(s) 1007
GsuI CTGGAG 2 cut(s) 403, 452
HaeII RGCGCY 3 cut(s) 99, 400, 450
HaeIII GGCC 8 cut(s) 105, 176, 236, 339, 350, 362, 767, 1050
HapII CCGG 5 cut(s) 24, 159, 173, 217, 746
HgaI GACGC 2 cut(s) 151, 448
HhaI GCGC 3 cut(s) 98, 399, 449
Hin1I GRCGYC 2 cut(s) 162, 366
Hin1II CATG 3 cut(s) 81, 230, 695
Hin6I GCGC 3 cut(s) 96, 397, 447
HinP1I GCGC 3 cut(s) 96, 397, 447
HinfI GANTC 5 cut(s) 113, 211, 717, 793, 805
HpaII CCGG 5 cut(s) 24, 159, 173, 217, 746
HphI GGTGA 1 cut(s) 1019
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 3 cut(s) 208, 531, 1154
Hpy188III TCNNGA 5 cut(s) 46, 217, 385, 651, 746
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 3 cut(s) 167, 323, 368
HpyAV CCTTC 4 cut(s) 214, 407, 757, 935
HpyCH4III ACNGT 4 cut(s) 200, 319, 733, 973
HpyCH4IV ACGT 3 cut(s) 366, 955, 993
HpyCH4V TGCA 4 cut(s) 11, 346, 468, 535
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 405, 414, 474
HpySE526I ACGT 3 cut(s) 366, 955, 993
Hsp92I GRCGYC 2 cut(s) 162, 366
Hsp92II CATG 3 cut(s) 81, 230, 695
HspAI GCGC 3 cut(s) 96, 397, 447
Kpn2I TCCGGA 2 cut(s) 216, 745
KroI GCCGGC 1 cut(s) 172
KroNI GCCGGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 4 cut(s) 306, 688, 698, 771
LmnI GCTCC 7 cut(s) 40, 48, 132, 422, 433, 461, 510
Lsp1109I GCAGC 2 cut(s) 558, 1105
LweI GCATC 2 cut(s) 522, 1096
MaeII ACGT 3 cut(s) 366, 955, 993
MaeIII GTNAC 3 cut(s) 735, 891, 973
MalI GATC 4 cut(s) 308, 690, 700, 773
MboI GATC 4 cut(s) 306, 688, 698, 771
MboII GAAGA 7 cut(s) 10, 61, 466, 509, 595, 1022, 1126
MflI RGATCY 1 cut(s) 771
MhlI GDGCHC 2 cut(s) 45, 341
MlsI TGGCCA 1 cut(s) 1050
MluCI AATT 2 cut(s) 962, 1082
MluNI TGGCCA 1 cut(s) 1050
MlyI GAGTC 3 cut(s) 107, 205, 814
MmeI TCCRAC 1 cut(s) 509
Mox20I TGGCCA 1 cut(s) 1050
MroI TCCGGA 2 cut(s) 216, 745
MroNI GCCGGC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 600
MscI TGGCCA 1 cut(s) 1050
MseI TTAA 2 cut(s) 669, 681
Msp20I TGGCCA 1 cut(s) 1050
MspI CCGG 5 cut(s) 24, 159, 173, 217, 746
MspR9I CCNGG 5 cut(s) 335, 431, 869, 930, 1068
Mva1269I GAATGC 1 cut(s) 1148
MvaI CCWGG 5 cut(s) 335, 431, 869, 930, 1068
MwoI GCNNNNNNNGC 4 cut(s) 102, 405, 414, 474
NaeI GCCGGC 1 cut(s) 174
NdeII GATC 4 cut(s) 306, 688, 698, 771
NgoMIV GCCGGC 1 cut(s) 172
NlaIII CATG 3 cut(s) 81, 230, 695
NlaIV GGNNCC 3 cut(s) 339, 383, 418
NmeAIII GCCGAG 1 cut(s) 423
NmuCI GTSAC 2 cut(s) 735, 891
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 1148
PdiI GCCGGC 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 717, 793
PflMI CCANNNNNTGG 1 cut(s) 358
PkrI GCNGC 4 cut(s) 476, 548, 647, 1095
PleI GAGTC 3 cut(s) 107, 205, 813
PpsI GAGTC 3 cut(s) 107, 205, 813
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 5 cut(s) 333, 429, 867, 928, 1066
PspFI CCCAGC 1 cut(s) 1003
PspGI CCWGG 5 cut(s) 333, 429, 867, 928, 1066
PspN4I GGNNCC 3 cut(s) 339, 383, 418
PspOMI GGGCCC 1 cut(s) 337
PspPI GGNCC 5 cut(s) 235, 244, 337, 338, 349
PspPPI RGGWCCY 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 771
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 669, 681
SatI GCNGC 4 cut(s) 475, 547, 646, 1094
Sau3AI GATC 4 cut(s) 306, 688, 698, 771
Sau96I GGNCC 5 cut(s) 235, 244, 337, 338, 349
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 3 cut(s) 107, 205, 814
ScrFI CCNGG 5 cut(s) 335, 431, 869, 930, 1068
SduI GDGCHC 2 cut(s) 45, 341
SfaNI GCATC 2 cut(s) 522, 1096
SinI GGWCC 1 cut(s) 244
Sse9I AATT 2 cut(s) 962, 1082
SsiI CCGC 7 cut(s) 181, 292, 406, 427, 474, 477, 645
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 5 cut(s) 333, 429, 867, 928, 1066
TaaI ACNGT 4 cut(s) 200, 319, 733, 973
TaiI ACGT 3 cut(s) 369, 958, 996
TaqI TCGA 5 cut(s) 165, 195, 309, 402, 697
TasI AATT 2 cut(s) 962, 1082
TatI WGTACW 1 cut(s) 153
TauI GCSGC 2 cut(s) 477, 648
TfiI GAWTC 2 cut(s) 717, 793
Tru1I TTAA 2 cut(s) 669, 681
Tru9I TTAA 2 cut(s) 669, 681
TscAI CASTG 3 cut(s) 475, 556, 918
TseFI GTSAC 2 cut(s) 735, 891
TseI GCWGC 2 cut(s) 546, 1093
Tsp45I GTSAC 2 cut(s) 735, 891
TspDTI ATGAA 6 cut(s) 319, 467, 772, 845, 1029, 1048
TspGWI ACGGA 1 cut(s) 53
TspRI CASTG 3 cut(s) 475, 556, 918
Van91I CCANNNNNTGG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 962
XcmI CCANNNNNNNNNTGG 3 cut(s) 427, 991, 1043
XmnI GAANNNNTTC 1 cut(s) 600
ZraI GACGTC 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.