pycom08g19900

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0007862
Physical Location & Seq
Reverse (-)
19859099 .. 19860198
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGTTTGAGATTCTTAAGTATCCCGGGGGAATTACTGTGATTCCTGTGCAATCAGCTTCAATCTGGCAGAAACCCCAGATTTTATTTAATTTTACTCTCAATAATTCTATATCGGACATAGTGGAAAATTTTGTTGAGTTAAATGAGCAGTTGAAGTTTGGATTGCATCTGAGGCCTTCTGAGGATGTATTTTTGCGAATTATAAACGGAATAGGTTCAACTAAAGCGCCCCCAGTTGTGGTTCAGGCATCTCTCGTGTCTGATGTAGGGGTCATTGTGCCACAGAGATTGAAGCAGTTGGTTCAAACAATCAAAGGTTCCCCTGCAAAAAATCTGGGTCTTAATAACACTGTCTTTGGTAAAGTTAAAAGTATCAGTTTATCTTCTTATCCAAAGGGTGCACCCGTTGCAACCTCTCCAACTCCTTCACCAGCTCCATCTCCAGATCATCAATTTCTCCATATCCTGCTTCACCGGTTCACTCTCCAGAACTGTCACCTCACGGTCATTATCTTCCACCTGCACTGTCACCTGACATTCATCATCTACCACCAGCGCCCATACCAGACATTCATCTTCTCCCCCCGGCACCCTCCCCTGACATTCATCACCTCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.96

Weight (kDa)

9.65

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 30 - 120 4.8e-20 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AarI CACCTGC 1 cut(s) 528
Acc36I ACCTGC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 588
AcsI RAATTY 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 238
AflII CTTAAG 1 cut(s) 14
AgeI ACCGGT 1 cut(s) 474
AgsI TTSAA 5 cut(s) 60, 154, 219, 292, 305
AluBI AGCT 2 cut(s) 56, 434
AluI AGCT 2 cut(s) 56, 434
Alw21I GWGCWC 1 cut(s) 403
Alw44I GTGCAC 1 cut(s) 399
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 173
ApaLI GTGCAC 1 cut(s) 399
ApoI RAATTY 1 cut(s) 127
AsiGI ACCGGT 1 cut(s) 474
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 2 cut(s) 229, 558
AsuC2I CCSGG 3 cut(s) 24, 25, 586
AsuHPI GGTGA 5 cut(s) 420, 464, 488, 521, 601
AvaI CYCGRG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 403
BanI GGYRCC 1 cut(s) 588
BauI CACGAG 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 403
BccI CCATC 1 cut(s) 445
BciVI GTATCC 1 cut(s) 30
BcnI CCSGG 3 cut(s) 24, 25, 586
BfoI RGCGCY 2 cut(s) 230, 559
BfrI CTTAAG 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 528
BfuI GTATCC 1 cut(s) 30
Bme1390I CCNGG 3 cut(s) 24, 25, 586
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 2 cut(s) 319, 590
BmrFI CCNGG 3 cut(s) 24, 25, 586
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 175, 257
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 2 cut(s) 426, 470
BpuMI CCSGG 3 cut(s) 24, 25, 586
BsaJI CCNNGG 3 cut(s) 23, 24, 584
BsaWI WCCGGW 1 cut(s) 474
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 23, 24, 584
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 161, 171
BseNI ACTGG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 588
BshTI ACCGGT 1 cut(s) 474
BsiHKAI GWGCWC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 3 cut(s) 24, 475, 586
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 1 cut(s) 445
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 162, 172
BspLI GGNNCC 2 cut(s) 319, 590
BspMI ACCTGC 1 cut(s) 528
BspT107I GGYRCC 1 cut(s) 588
BspTI CTTAAG 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 474
BsrI ACTGG 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 3 cut(s) 23, 24, 584
BssMI GATC 1 cut(s) 445
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst4CI ACNGT 5 cut(s) 37, 352, 494, 505, 527
BstAFI CTTAAG 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 407
BstDEI CTNAG 3 cut(s) 170, 180, 618
BstF5I GGATG 1 cut(s) 190
BstH2I RGCGCY 2 cut(s) 230, 559
BstHHI GCGC 2 cut(s) 229, 558
BstKTI GATC 1 cut(s) 448
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 2 cut(s) 172, 407
BstSCI CCNGG 3 cut(s) 22, 23, 584
BstSLI GKGCMC 1 cut(s) 403
BsuI GTATCC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 175
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 2 cut(s) 348, 523
BveI ACCTGC 1 cut(s) 528
CfoI GCGC 2 cut(s) 229, 558
Cfr10I RCCGGY 1 cut(s) 474
Cfr9I CCCGGG 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 474
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviJI RGCY 3 cut(s) 56, 175, 434
CviKI_1 RGCY 3 cut(s) 56, 175, 434
DdeI CTNAG 3 cut(s) 170, 180, 618
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
Eco147I AGGCCT 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 23
FaiI YATR 5 cut(s) 110, 119, 203, 462, 562
FokI GGATG 1 cut(s) 197
GlaI GCGC 2 cut(s) 228, 557
GsuI CTGGAG 2 cut(s) 426, 470
HaeII RGCGCY 2 cut(s) 230, 559
HaeIII GGCC 1 cut(s) 175
HapII CCGG 3 cut(s) 24, 475, 586
HhaI GCGC 2 cut(s) 229, 558
Hin6I GCGC 2 cut(s) 227, 556
HinP1I GCGC 2 cut(s) 227, 556
HinfI GANTC 2 cut(s) 10, 40
HpaII CCGG 3 cut(s) 24, 475, 586
HphI GGTGA 5 cut(s) 420, 464, 488, 521, 601
Hpy166II GTNNAC 2 cut(s) 401, 480
Hpy188I TCNGA 4 cut(s) 115, 171, 181, 262
Hpy188III TCNNGA 2 cut(s) 443, 487
Hpy8I GTNNAC 2 cut(s) 401, 480
HpyAV CCTTC 2 cut(s) 186, 435
HpyCH4III ACNGT 5 cut(s) 37, 352, 494, 505, 527
HpyCH4V TGCA 6 cut(s) 49, 166, 326, 401, 410, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 407
HpyF3I CTNAG 3 cut(s) 170, 180, 618
HspAI GCGC 2 cut(s) 227, 556
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 439
LweI GCATC 2 cut(s) 175, 257
MaeIII GTNAC 2 cut(s) 494, 527
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 3 cut(s) 375, 505, 568
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 6 cut(s) 30, 88, 103, 127, 198, 452
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 5 cut(s) 165, 175, 424, 509, 603
MroXI GAANNNNTTC 1 cut(s) 214
MseI TTAA 5 cut(s) 15, 87, 140, 342, 366
MspCI CTTAAG 1 cut(s) 14
MspI CCGG 3 cut(s) 24, 475, 586
MspR9I CCNGG 3 cut(s) 24, 25, 586
MwoI GCNNNNNNNGC 2 cut(s) 172, 407
NciI CCSGG 3 cut(s) 24, 25, 586
NdeII GATC 1 cut(s) 445
NlaIV GGNNCC 2 cut(s) 319, 590
NmuCI GTSAC 2 cut(s) 494, 527
PaqCI CACCTGC 1 cut(s) 528
PceI AGGCCT 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 10, 40
PinAI ACCGGT 1 cut(s) 474
PsiI TTATAA 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 319, 590
SaqAI TTAA 5 cut(s) 15, 87, 140, 342, 366
Sau3AI GATC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 24, 25, 586
SduI GDGCHC 1 cut(s) 403
SetI ASST 9 cut(s) 58, 217, 319, 416, 436, 501, 522, 534, 614
SfaNI GCATC 2 cut(s) 175, 257
SmaI CCCGGG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 6 cut(s) 30, 88, 103, 127, 198, 452
SseBI AGGCCT 1 cut(s) 175
StuI AGGCCT 1 cut(s) 175
StyD4I CCNGG 3 cut(s) 22, 23, 584
TaaI ACNGT 5 cut(s) 37, 352, 494, 505, 527
TasI AATT 6 cut(s) 30, 88, 103, 127, 198, 452
TfiI GAWTC 2 cut(s) 10, 40
Tru1I TTAA 5 cut(s) 15, 87, 140, 342, 366
Tru9I TTAA 5 cut(s) 15, 87, 140, 342, 366
TscAI CASTG 2 cut(s) 355, 530
TseFI GTSAC 2 cut(s) 494, 527
Tsp45I GTSAC 2 cut(s) 494, 527
TspDTI ATGAA 3 cut(s) 529, 562, 595
TspGWI ACGGA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 2 cut(s) 355, 530
Vha464I CTTAAG 1 cut(s) 14
VneI GTGCAC 1 cut(s) 399
XapI RAATTY 1 cut(s) 127
XmaI CCCGGG 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.