Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Forward (+)

2462318 .. 2463626

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAATAATTATGCTCACGTATTTGACCTTCTCACTCGCTTGCGACAGGCTGTTGATCATCCGTACCTTGCGGTGTATTCTGCACTTGCTGCACTGAGAAATGGAAGCAACCTTAATATAAATGAGAAAATCTGTGGAATTTGTCATGAAGCAGCAGAAGATCCAGTGGTTACTGCTTGTGAGCACGCGTTTTGCAAAGCTTGCTTGCTCGATTTTGCTGATTGTTTGGGACAAGTCTCATGCCCGACATGCTCAAAACCAGTTACTATTGATTTCGCTACAAAACCAGATGCTGCTAATCAGACTAAAACTACCATCAAGGGGTTTAGATCCTCAAGCATTTTGAACAGAATTAAGCTTGACAATTTACAGACTTGCACAAAAATTGAGGCTTTGAATTATGAGATTTGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

139

Amino Acids

15.16

Weight (kDa)

6.05

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	155, 324
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	346, 397
AluBI	AGCT	2 cut(s)	200, 358
AluI	AGCT	2 cut(s)	200, 358
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	155, 324
AlwNI	CAGNNNCTG	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	89, 152, 293
ApoI	RAATTY	1 cut(s)	138
BarI	GAAGNNNNNNTAC	2 cut(s)	12, 44
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	76, 164, 280
BccI	CCATC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	241
BisI	GCNGC	3 cut(s)	90, 153, 294
BlsI	GCNGC	3 cut(s)	91, 154, 295
BmsI	GCATC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	164, 260
BseGI	GGATG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	164, 260
BseXI	GCAGC	3 cut(s)	76, 164, 280
BsgI	GTGCAG	2 cut(s)	66, 75
Bsh1236I	CGCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	55, 160, 329
BspACI	CCGC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	188
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	155, 324
BsrI	ACTGG	2 cut(s)	164, 260
BssMI	GATC	3 cut(s)	55, 160, 329
BstAPI	GCANNNNNTGC	2 cut(s)	89, 201
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	41, 186, 202, 206
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	58
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	3 cut(s)	58, 163, 332
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	55, 160, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 201, 249
BstNSI	RCATGY	1 cut(s)	252
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	76, 164, 280
BstX2I	RGATCY	2 cut(s)	160, 329
BstYI	RGATCY	2 cut(s)	160, 329
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	92, 171
Cac8I	GCNNGC	4 cut(s)	41, 186, 202, 206
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	3 cut(s)	146, 240, 249
CviJI	RGCY	4 cut(s)	50, 200, 358, 392
CviKI_1	RGCY	4 cut(s)	50, 200, 358, 392
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	3 cut(s)	57, 162, 331
DpnII	GATC	3 cut(s)	55, 160, 329
FaeI	CATG	3 cut(s)	149, 243, 252
FaiI	YATR	6 cut(s)	12, 119, 147, 241, 250, 402
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	145, 239, 248
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	90, 153, 294
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	90, 153, 294
GluI	GCNGC	3 cut(s)	90, 153, 294
Hin1II	CATG	3 cut(s)	149, 243, 252
HindIII	AAGCTT	2 cut(s)	198, 356
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	83, 92, 195, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 201, 249
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	149, 243, 252
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 160, 329
LpnPI	CCDG	4 cut(s)	32, 177, 273, 300
Lsp1109I	GCAGC	3 cut(s)	76, 164, 280
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	169, 262
MalI	GATC	3 cut(s)	57, 162, 331
MboI	GATC	3 cut(s)	55, 160, 329
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	2 cut(s)	160, 329
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	6 cut(s)	7, 138, 351, 364, 384, 397
MluI	ACGCGT	1 cut(s)	186
MnlI	CCTC	2 cut(s)	343, 382
MseI	TTAA	2 cut(s)	114, 354
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	89, 201, 249
NdeII	GATC	3 cut(s)	55, 160, 329
NlaIII	CATG	3 cut(s)	149, 243, 252
NspI	RCATGY	1 cut(s)	252
PagI	TCATGA	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	91, 154, 295
Ppu21I	YACGTR	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	160, 329
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	114, 354
SatI	GCNGC	3 cut(s)	90, 153, 294
Sau3AI	GATC	3 cut(s)	55, 160, 329
SduI	GDGCHC	1 cut(s)	186
SetI	ASST	6 cut(s)	21, 30, 69, 114, 202, 360
SfaNI	GCATC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	6 cut(s)	7, 138, 351, 364, 384, 397
SsiI	CCGC	1 cut(s)	71
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	210
TasI	AATT	6 cut(s)	7, 138, 351, 364, 384, 397
Tru1I	TTAA	2 cut(s)	114, 354
Tru9I	TTAA	2 cut(s)	114, 354
TscAI	CASTG	2 cut(s)	99, 171
TseI	GCWGC	3 cut(s)	89, 152, 293
TspDTI	ATGAA	2 cut(s)	17, 162
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	99, 171
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.