Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Forward (+)

12569829 .. 12571174

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTTGAAAGAGATGGTTCTGCAAAGGGAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTCACTACTCCTTGCAAAAGTCGGGTGTCAACTGTGTTCAGTTGGTTGGAAGCATGACCATGTCTGCGAGGGATACTGCTATAAAGAGATTCACTGAGGATCCAGATTGCAGAATTTTCTTAATGAGCTTGAAAGCCGGAGGTGTTGCTCTTAATCTTACAGTCGCATCACATATATCTGCACGATCTAGTTGCGTGATGAACGACTTGAGCATGTTTGGTGGCCAAATCCCAGATTCCTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

104

Amino Acids

11.24

Weight (kDa)

6.03

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	7 - 81	3.7e-10	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	69, 161, 174
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	8, 199
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
AlwI	GGATC	3 cut(s)	69, 161, 174
AoxI	GGCC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	180
BalI	TGGCCA	1 cut(s)	291
BamHI	GGATCC	1 cut(s)	166
BccI	CCATC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BciVI	GTATCC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	204
BsnI	GGCC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	61, 166, 251
BspANI	GGCC	1 cut(s)	291
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	69, 161, 174
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	3 cut(s)	61, 166, 251
BssT1I	CCWWGG	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	101, 229
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	64, 169, 254
BstMBI	GATC	3 cut(s)	61, 166, 251
BstNSI	RCATGY	1 cut(s)	283
BstX2I	RGATCY	2 cut(s)	61, 166
BstYI	RGATCY	2 cut(s)	61, 166
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	159
CviAII	CATG	3 cut(s)	121, 127, 280
CviJI	RGCY	4 cut(s)	42, 195, 203, 291
CviKI_1	RGCY	4 cut(s)	42, 195, 203, 291
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	63, 168, 253
DpnII	GATC	3 cut(s)	61, 166, 251
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	124, 130, 283
FaiI	YATR	6 cut(s)	122, 128, 149, 240, 242, 281
FatI	CATG	3 cut(s)	120, 126, 279
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	291
HapII	CCGG	1 cut(s)	204
Hin1II	CATG	3 cut(s)	124, 130, 283
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	156, 302
HpaII	CCGG	1 cut(s)	204
Hpy166II	GTNNAC	2 cut(s)	48, 97
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	48, 97
HpyCH4III	ACNGT	2 cut(s)	101, 229
HpyCH4V	TGCA	4 cut(s)	23, 82, 177, 248
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	124, 130, 283
Kzo9I	GATC	3 cut(s)	61, 166, 251
LpnPI	CCDG	3 cut(s)	56, 183, 217
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	255
MalI	GATC	3 cut(s)	63, 168, 253
MboI	GATC	3 cut(s)	61, 166, 251
MflI	RGATCY	2 cut(s)	61, 166
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	2 cut(s)	30, 180
MluNI	TGGCCA	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	129, 157, 200
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	2 cut(s)	188, 219
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	1 cut(s)	204
NdeII	GATC	3 cut(s)	61, 166, 251
NlaIII	CATG	3 cut(s)	124, 130, 283
NlaIV	GGNNCC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	156, 302
PflFI	GACNNNGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	61, 166
PsyI	GACNNNGTC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	188, 219
Sau3AI	GATC	3 cut(s)	61, 166, 251
SetI	ASST	2 cut(s)	197, 211
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	30, 180
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	101, 229
TasI	AATT	2 cut(s)	30, 180
TfiI	GAWTC	2 cut(s)	156, 302
Tru1I	TTAA	2 cut(s)	188, 219
Tru9I	TTAA	2 cut(s)	188, 219
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	166
Tth111I	GACNNNGTC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.