Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Reverse (-)

40203907 .. 40206742

Gene Structure 2836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAATAATTATGCTCACATCTTTGATCTTCTCACACGCTTGCGGCAGAAAGAAGAAATCAGATTCATGGTTGAAAGAGATGGTTCTGCAAAGGGAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTCACTACTCCTTGCAAAAGTCGGGTGTCAACTGTGTTCAGTTGGTTGGAAGCATGACCATGTCTGCGAGGGATAGTGCTATAAAGAGATTCACTGAGGATCCAGATTGCAGAATTTTCTTAATGAGCTTGAAAGCCGGAGGTGTTGCTCTTAATCTTACAGTCGCATCACATGTGAGTATTTTCTGTGTTTTAAGTTACTTGGAGAGTTGGAGTTATGCTATACATATGAAGATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

8.88

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	25 - 108	6e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	3 cut(s)	135, 227, 240
AcsI	RAATTY	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	2 cut(s)	74, 265
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
AlwI	GGATC	3 cut(s)	135, 227, 240
ApoI	RAATTY	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	232
BccI	CCATC	1 cut(s)	74
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	270
Bsp143I	GATC	4 cut(s)	25, 127, 232, 366
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	135, 227, 240
BsrI	ACTGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	25, 127, 232, 366
Bst4CI	ACNGT	2 cut(s)	167, 295
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	1 cut(s)	228
BstKTI	GATC	4 cut(s)	28, 130, 235, 369
BstMBI	GATC	4 cut(s)	25, 127, 232, 366
BstNSI	RCATGY	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	127, 232
BstYI	RGATCY	2 cut(s)	127, 232
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	41
CviAII	CATG	4 cut(s)	67, 187, 193, 305
CviJI	RGCY	3 cut(s)	108, 261, 269
CviKI_1	RGCY	3 cut(s)	108, 261, 269
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	4 cut(s)	27, 129, 234, 368
DpnII	GATC	4 cut(s)	25, 127, 232, 366
FaeI	CATG	4 cut(s)	70, 190, 196, 308
FatI	CATG	4 cut(s)	66, 186, 192, 304
FauNDI	CATATG	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
GluI	GCNGC	1 cut(s)	44
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	4 cut(s)	70, 190, 196, 308
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	2 cut(s)	63, 222
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	114, 163
Hpy188I	TCNGA	1 cut(s)	62
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	114, 163
HpyCH4III	ACNGT	2 cut(s)	167, 295
HpyCH4V	TGCA	3 cut(s)	89, 148, 243
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	4 cut(s)	70, 190, 196, 308
Kzo9I	GATC	4 cut(s)	25, 127, 232, 366
LpnPI	CCDG	4 cut(s)	122, 249, 283, 355
LweI	GCATC	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	4 cut(s)	27, 129, 234, 368
MboI	GATC	4 cut(s)	25, 127, 232, 366
MboII	GAAGA	2 cut(s)	20, 65
MflI	RGATCY	2 cut(s)	127, 232
MluCI	AATT	3 cut(s)	7, 96, 246
MmeI	TCCRAC	2 cut(s)	160, 323
MnlI	CCTC	3 cut(s)	195, 223, 266
MseI	TTAA	3 cut(s)	254, 285, 326
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	1 cut(s)	270
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	4 cut(s)	25, 127, 232, 366
NlaIII	CATG	4 cut(s)	70, 190, 196, 308
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	308
PciI	ACATGT	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	63, 222
PflFI	GACNNNGTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	45
PscI	ACATGT	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	127, 232
PsyI	GACNNNGTC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	254, 285, 326
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	4 cut(s)	25, 127, 232, 366
SetI	ASST	3 cut(s)	263, 277, 374
SfaNI	GCATC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	7, 96, 246
SsiI	CCGC	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	167, 295
TasI	AATT	3 cut(s)	7, 96, 246
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	63, 222
Tru1I	TTAA	3 cut(s)	254, 285, 326
Tru9I	TTAA	3 cut(s)	254, 285, 326
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	17, 55
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.