Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Forward (+)

60519067 .. 60521114

Gene Structure 2048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAATAATTATGCTCACATCTTTGATCTTCTCACACGCTTGCGGCAGGCTGTTGATCATCCTTACCTTGTCGTGTATTCTGCAACTGCTGCTTTAAGAAATGGAAACAAGGCTAATATTGATAACACTGAGAAAGTTTGTGGCATTTGTCATGATCCAGCAGAAGATCAAGTGGTTACTGCTTGTGAACATGTCTTTTGCAAGGCATGCTTAATTGATTTTTCTGCTTCCCTGGGACAAGTTTCATGCCCTTCATGCTCAAAATTGCTTACTGTGGATCTGACTACAAGTGTGGGTGCTGGTAATCAGACTACTAAAACTACCATTAAGGGTTTTAGATCCTCAAGCATTTTGAACAGAATTCAGCTTGAGAATTTTCAGACTAGCACAAAAATAGAGGCTTTGAAAGAAGAAATCAGATTCATGGTTGAAAGAGATGGTTCTGCAAAGGGAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTCACTACTCCTTGCAAAAGTCGGGTGTCAACTGTGTTCAGTTGGTTGGAAGCATGACCATGTCTGCGAGGGATACTGCTATAAAGAGATTCACTGAGGATGCAGATTGCAGAATTTTCTTAATGAGCTTGAAAGCCGGAGGTGTTGCTCTTAATCTTACAGTCGCATCACATGTTTTCTTGATGGACCCATGGTGGAATCCAGCCGTGGAGCGGCAAGCACAAGATAGAATCCACCGGATAGGGCAGTACAAACCGATCAGAATTGTGAGATTTGTAATTGAGAACACAATTGAGGAAAGGATTTTGAAGCTACAGGAGAAGAAGGAACTAGTGTTTGAGGGCACCATTGGTGGTTCTACAGAGGCGCTCTATAAAGTTCTGCAATTTTTTACTATGTGTCTACAGCGTACAGAGACTGATATAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

307

Amino Acids

34.45

Weight (kDa)

7.03

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_UBOX	PF13445	47 - 84	1e-06	RING-type zinc-finger
zf-C3HC4	PF00097	47 - 86	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	47 - 86	4.5e-06	Zinc finger, C3HC4 type (RING finger)
Helicase_C	PF00271	131 - 245	1.8e-20	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	833
AccBSI	CCGCTC	1 cut(s)	703
AccI	GTMKAC	1 cut(s)	892
AciI	CCGC	2 cut(s)	43, 703
AclWI	GGATC	4 cut(s)	149, 285, 333, 492
AcsI	RAATTY	3 cut(s)	360, 373, 603
AfaI	GTAC	2 cut(s)	740, 901
AfiI	CCNNNNNNNGG	1 cut(s)	702
AflIII	ACRYGT	2 cut(s)	190, 661
AgsI	TTSAA	5 cut(s)	355, 406, 431, 622, 799
AhlI	ACTAGT	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	367, 618, 802
AluI	AGCT	3 cut(s)	367, 618, 802
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	4 cut(s)	149, 285, 333, 492
AlwNI	CAGNNNCTG	1 cut(s)	908
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	3 cut(s)	360, 373, 603
AspLEI	GCGC	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	676
AvaII	GGWCC	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	833
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	431, 667
BceAI	ACGGC	1 cut(s)	680
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	556
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	899
BcuI	ACTAGT	1 cut(s)	820
BfaI	CTAG	2 cut(s)	384, 821
BfmI	CTRYAG	3 cut(s)	803, 849, 893
BfoI	RGCGCY	1 cut(s)	860
BfuI	GTATCC	1 cut(s)	556
BisI	GCNGC	3 cut(s)	44, 90, 704
BlsI	GCNGC	3 cut(s)	45, 91, 705
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	1 cut(s)	676
BmiI	GGNNCC	2 cut(s)	678, 835
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	580, 665
BpuEI	CTTGAG	2 cut(s)	328, 389
BsaJI	CCNNGG	4 cut(s)	231, 232, 680, 696
BsaWI	WCCGGW	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	1 cut(s)	702
Bse1I	ACTGG	1 cut(s)	466
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	231, 232, 680, 696
BseGI	GGATG	2 cut(s)	58, 595
BseLI	CCNNNNNNNGG	1 cut(s)	702
BseMII	CTCAG	2 cut(s)	120, 576
BseNI	ACTGG	1 cut(s)	466
BseSI	GKGCMC	1 cut(s)	836
BseXI	GCAGC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	833
BsiSI	CCGG	2 cut(s)	627, 727
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	702
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
Bsp19I	CCATGG	1 cut(s)	680
BspACI	CCGC	2 cut(s)	43, 703
BspCNI	CTCAG	2 cut(s)	121, 577
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	678, 835
BspPI	GGATC	4 cut(s)	149, 285, 333, 492
BspT107I	GGYRCC	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	703
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	4 cut(s)	231, 232, 680, 696
BssMI	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	274, 524, 652
BstAPI	GCANNNNNTGC	2 cut(s)	89, 207
BstC8I	GCNNGC	4 cut(s)	41, 48, 208, 708
BstDEI	CTNAG	2 cut(s)	129, 585
BstDSI	CCRYGG	2 cut(s)	680, 696
BstF5I	GGATG	2 cut(s)	58, 595
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	1 cut(s)	859
BstKTI	GATC	8 cut(s)	28, 58, 157, 169, 280, 341, 487, 750
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 207, 255
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	3 cut(s)	194, 210, 665
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	3 cut(s)	803, 849, 893
BstSLI	GKGCMC	1 cut(s)	836
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	3 cut(s)	277, 338, 484
BstYI	RGATCY	3 cut(s)	277, 338, 484
BsuI	GTATCC	1 cut(s)	556
BtgI	CCRYGG	2 cut(s)	680, 696
BtsCI	GGATG	2 cut(s)	58, 595
BtsIMutI	CAGTG	2 cut(s)	126, 582
Cac8I	GCNNGC	4 cut(s)	41, 48, 208, 708
CaiI	CAGNNNCTG	1 cut(s)	908
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	859
Cfr13I	GGNCC	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	739, 900
CviJI	RGCY	9 cut(s)	50, 113, 367, 401, 465, 618, 626, 695, 802
CviKI_1	RGCY	9 cut(s)	50, 113, 367, 401, 465, 618, 626, 695, 802
CviQI	GTAC	2 cut(s)	739, 900
DdeI	CTNAG	2 cut(s)	129, 585
DpnI	GATC	8 cut(s)	27, 57, 156, 168, 279, 340, 486, 749
DpnII	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
Eco130I	CCWWGG	1 cut(s)	680
Eco47I	GGWCC	1 cut(s)	676
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	680
ErhI	CCWWGG	1 cut(s)	680
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FaqI	GGGAC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	55
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	3 cut(s)	44, 90, 704
FokI	GGATG	2 cut(s)	45, 602
Fsp4HI	GCNGC	3 cut(s)	44, 90, 704
FspBI	CTAG	2 cut(s)	384, 821
GlaI	GCGC	1 cut(s)	858
GluI	GCNGC	3 cut(s)	44, 90, 704
HaeII	RGCGCY	1 cut(s)	860
HapII	CCGG	2 cut(s)	627, 727
HhaI	GCGC	1 cut(s)	859
Hin6I	GCGC	1 cut(s)	857
HinP1I	GCGC	1 cut(s)	857
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	4 cut(s)	420, 579, 688, 720
HpaII	CCGG	2 cut(s)	627, 727
Hpy166II	GTNNAC	4 cut(s)	188, 471, 520, 893
Hpy188I	TCNGA	5 cut(s)	282, 309, 381, 419, 752
Hpy188III	TCNNGA	2 cut(s)	152, 670
Hpy8I	GTNNAC	4 cut(s)	188, 471, 520, 893
HpyAV	CCTTC	2 cut(s)	261, 808
HpyCH4III	ACNGT	3 cut(s)	274, 524, 652
HpyCH4V	TGCA	7 cut(s)	83, 201, 446, 505, 593, 600, 874
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 207, 255
HpyF3I	CTNAG	2 cut(s)	129, 585
HspAI	GCGC	1 cut(s)	857
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	580, 665
MaeI	CTAG	2 cut(s)	384, 821
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	8 cut(s)	27, 57, 156, 168, 279, 340, 486, 749
MbiI	CCGCTC	1 cut(s)	703
MboI	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
MboII	GAAGA	4 cut(s)	20, 176, 422, 823
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	3 cut(s)	277, 338, 484
MhlI	GDGCHC	1 cut(s)	836
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	8 cut(s)	352, 391, 552, 580, 623, 778, 823, 847
MseI	TTAA	5 cut(s)	95, 212, 327, 611, 642
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	2 cut(s)	627, 727
MspR9I	CCNGG	1 cut(s)	233
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	89, 207, 255
NcoI	CCATGG	1 cut(s)	680
NdeII	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
NlaIV	GGNNCC	2 cut(s)	678, 835
NspI	RCATGY	3 cut(s)	194, 210, 665
PaeI	GCATGC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	151
PasI	CCCWGGG	1 cut(s)	232
PciI	ACATGT	2 cut(s)	190, 661
PfeI	GAWTC	4 cut(s)	420, 579, 688, 720
PflFI	GACNNNGTC	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	45, 91, 705
PscI	ACATGT	2 cut(s)	190, 661
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	678, 835
PspPI	GGNCC	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	908
PsuI	RGATCY	3 cut(s)	277, 338, 484
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	2 cut(s)	740, 901
RsaNI	GTAC	2 cut(s)	739, 900
RseI	CAYNNNNRTG	1 cut(s)	548
SaqAI	TTAA	5 cut(s)	95, 212, 327, 611, 642
SatI	GCNGC	3 cut(s)	44, 90, 704
Sau3AI	GATC	8 cut(s)	25, 55, 154, 166, 277, 338, 484, 747
Sau96I	GGNCC	1 cut(s)	676
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	836
SetI	ASST	5 cut(s)	69, 369, 620, 634, 804
SfaNI	GCATC	2 cut(s)	580, 665
SfcI	CTRYAG	3 cut(s)	803, 849, 893
SinI	GGWCC	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	2 cut(s)	343, 368
SmoI	CTYRAG	2 cut(s)	343, 368
SpeI	ACTAGT	1 cut(s)	820
SphI	GCATGC	1 cut(s)	210
SsiI	CCGC	2 cut(s)	43, 703
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	2 cut(s)	384, 821
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	3 cut(s)	274, 524, 652
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	2 cut(s)	46, 706
TfiI	GAWTC	4 cut(s)	420, 579, 688, 720
Tru1I	TTAA	5 cut(s)	95, 212, 327, 611, 642
Tru9I	TTAA	5 cut(s)	95, 212, 327, 611, 642
TscAI	CASTG	2 cut(s)	133, 589
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	17, 234, 243, 412
TspRI	CASTG	2 cut(s)	133, 589
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	3 cut(s)	360, 373, 603
XceI	RCATGY	3 cut(s)	194, 210, 665
XmiI	GTMKAC	1 cut(s)	892
XspI	CTAG	2 cut(s)	384, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.