Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030100.1

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2130

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030100.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 680 bp

atgttgtatgttttgttccatacagctgttgatcatccttaccttgtcgtgtattctgcaactgctgctttaagaaatggaaacaaggctaatattgataacactgagaaagtttgtggcatttgtcatgatccagcagaagatcaagtggttactgcttgtgaacatgtcttttgcaaggcatgcttaattgatttttctgcttccctgggacaagtttcatgcccttcatgctcaaaattgcttactgtggatctgactacaagtgtgggtgctggtaatcagactactaaaactaccattaagggttttagatcctcaagcattttgaacagaattcagcttgagaattttcagactagcacaaaaatagaggctttgaaagaagaaatcagattcatggttgaaagagatggttctgcaaagggaattgtttttagccagttcacatcattcttggatctcattcactactccttgcaaaagtcgggtgtcaactgtgttcagttggttttcttgatggacccatggtggaatccagccgtggagtggcaagcacaagatagaatccaccggatagggcagtacaaaccgatcagaattgtgagatttgtaattgaaaacacaattgaggaaaggattttgaagctacaggagaagaaggaactagtgtttgaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

227

Amino Acids

25.61

Weight (kDa)

6.59

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	125, 261, 309, 468
AcsI	RAATTY	2 cut(s)	336, 349
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	331, 382, 407, 620, 646
AhlI	ACTAGT	1 cut(s)	667
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	26, 343, 649
AluI	AGCT	3 cut(s)	26, 343, 649
AlwI	GGATC	4 cut(s)	125, 261, 309, 468
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	336, 349
AspS9I	GGNCC	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	523
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	2 cut(s)	407, 514
BceAI	ACGGC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	667
BfaI	CTAG	2 cut(s)	360, 668
BfmI	CTRYAG	1 cut(s)	650
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	304, 365
BsaJI	CCNNGG	4 cut(s)	207, 208, 527, 543
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	4 cut(s)	207, 208, 527, 543
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	225
Bsp143I	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
Bsp19I	CCATGG	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	97
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	4 cut(s)	125, 261, 309, 468
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	4 cut(s)	207, 208, 527, 543
BssMI	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	2 cut(s)	250, 500
BstAPI	GCANNNNNTGC	2 cut(s)	65, 183
BstC8I	GCNNGC	2 cut(s)	184, 555
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	2 cut(s)	527, 543
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	7 cut(s)	34, 133, 145, 256, 317, 463, 597
BstMBI	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 183, 231
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	170, 186
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	1 cut(s)	52
BstX2I	RGATCY	3 cut(s)	253, 314, 460
BstYI	RGATCY	3 cut(s)	253, 314, 460
BtgI	CCRYGG	2 cut(s)	527, 543
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	184, 555
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	7 cut(s)	128, 167, 183, 222, 231, 400, 528
CviJI	RGCY	7 cut(s)	26, 89, 343, 377, 441, 542, 649
CviKI_1	RGCY	7 cut(s)	26, 89, 343, 377, 441, 542, 649
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	7 cut(s)	33, 132, 144, 255, 316, 462, 596
DpnII	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
Eco130I	CCWWGG	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	523
EcoRI	GAATTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	7 cut(s)	131, 170, 186, 225, 234, 403, 531
FaiI	YATR	9 cut(s)	9, 21, 129, 168, 184, 223, 232, 401, 529
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	7 cut(s)	127, 166, 182, 221, 230, 399, 527
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	2 cut(s)	360, 668
GluI	GCNGC	1 cut(s)	66
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	7 cut(s)	131, 170, 186, 225, 234, 403, 531
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	396, 535, 567
HpaII	CCGG	1 cut(s)	574
Hpy166II	GTNNAC	3 cut(s)	164, 447, 496
Hpy188I	TCNGA	5 cut(s)	258, 285, 357, 395, 599
Hpy188III	TCNNGA	2 cut(s)	128, 517
Hpy8I	GTNNAC	3 cut(s)	164, 447, 496
HpyAV	CCTTC	2 cut(s)	237, 655
HpyCH4III	ACNGT	2 cut(s)	250, 500
HpyCH4V	TGCA	4 cut(s)	59, 177, 422, 481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 183, 231
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	7 cut(s)	131, 170, 186, 225, 234, 403, 531
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
LpnPI	CCDG	8 cut(s)	147, 194, 221, 261, 455, 552, 587, 638
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	2 cut(s)	360, 668
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	7 cut(s)	33, 132, 144, 255, 316, 462, 596
MboI	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
MboII	GAAGA	3 cut(s)	152, 398, 670
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	3 cut(s)	253, 314, 460
MluCI	AATT	8 cut(s)	189, 239, 336, 349, 429, 600, 615, 627
MnlI	CCTC	4 cut(s)	328, 367, 625, 670
MseI	TTAA	3 cut(s)	71, 188, 303
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	65, 183, 231
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
NlaIII	CATG	7 cut(s)	131, 170, 186, 225, 234, 403, 531
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	2 cut(s)	170, 186
PaeI	GCATGC	1 cut(s)	186
PagI	TCATGA	1 cut(s)	127
PasI	CCCWGGG	1 cut(s)	208
PciI	ACATGT	1 cut(s)	166
PfeI	GAWTC	3 cut(s)	396, 535, 567
PkrI	GCNGC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	523
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	3 cut(s)	253, 314, 460
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	71, 188, 303
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	7 cut(s)	31, 130, 142, 253, 314, 460, 594
Sau96I	GGNCC	1 cut(s)	523
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	4 cut(s)	28, 45, 345, 651
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	1 cut(s)	523
SmlI	CTYRAG	2 cut(s)	319, 344
SmoI	CTYRAG	2 cut(s)	319, 344
SpeI	ACTAGT	1 cut(s)	667
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	8 cut(s)	189, 239, 336, 349, 429, 600, 615, 627
SspI	AATATT	1 cut(s)	94
SspMI	CTAG	2 cut(s)	360, 668
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	250, 500
TasI	AATT	8 cut(s)	189, 239, 336, 349, 429, 600, 615, 627
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	3 cut(s)	396, 535, 567
Tru1I	TTAA	3 cut(s)	71, 188, 303
Tru9I	TTAA	3 cut(s)	71, 188, 303
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	3 cut(s)	210, 219, 388
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	2 cut(s)	336, 349
XceI	RCATGY	2 cut(s)	170, 186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	546
XspI	CTAG	2 cut(s)	360, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.