Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002845.1

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Forward (+)

75056 .. 79500

Gene Structure 4445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002845.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgttccaggttactgcttgtgaacatgtcttttgcaaggcatgcttaattgatttttctgcttccctgggacaagtttcatgcccttcatgctcaaaattgcttactgtggatctgactacaagtgtgggtgctggtaatcagactactaaaactaccattaagggttttagatcctcaagcattttgaacagaattcagcttgagaattttcagactagcacaaaaatagaggctttgaaagaagaaatcagattcatggttgaaagagatggttctgcaaagggaattgtttttagccagttcacatcattcttggatctcattcactactccttgcaaaagtcgggtgtcaactgtgttcagttgatctgccgatccatcagacgacggagtcagctacaaaccgtcgacccaatgatcgactgcactcaaaatcacctccttgcagcaccgccgtgggtgagaatcatcactagaggccaccctagagaggaccgcaaggtggaggcgaagatgtctatgcaggtttcaccggtagaggtcgtcggaaaaaggaacgtcggccgggtcgggtcggtcccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

9.38

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	2 cut(s)	455, 499
AclWI	GGATC	4 cut(s)	120, 168, 327, 372
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	195, 208
AfiI	CCNNNNNNNGG	2 cut(s)	493, 505
AflIII	ACRYGT	1 cut(s)	25
AgeI	ACCGGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	190, 241, 266
AjnI	CCWGG	2 cut(s)	6, 66
AleI	CACNNNNGTG	1 cut(s)	457
AluBI	AGCT	2 cut(s)	202, 400
AluI	AGCT	2 cut(s)	202, 400
AlwI	GGATC	4 cut(s)	120, 168, 327, 372
AoxI	GGCC	2 cut(s)	481, 565
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	195, 208
AsiGI	ACCGGT	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	496, 580
AsuC2I	CCSGG	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	431, 475, 525
AvaII	GGWCC	2 cut(s)	496, 580
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	2 cut(s)	266, 389
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	2 cut(s)	8, 68
BcnI	CCSGG	1 cut(s)	569
BfaI	CTAG	3 cut(s)	219, 477, 489
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	1 cut(s)	450
BlsI	GCNGC	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	8, 68, 569
Bme18I	GGWCC	2 cut(s)	496, 580
BmgT120I	GGNCC	2 cut(s)	496, 580
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	8, 68, 569
BpuEI	CTTGAG	2 cut(s)	163, 224
BpuMI	CCSGG	1 cut(s)	569
BsaJI	CCNNGG	3 cut(s)	66, 67, 458
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 505
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	8, 68
BseDI	CCNNGG	3 cut(s)	66, 67, 458
BseLI	CCNNNNNNNGG	2 cut(s)	493, 505
BseNI	ACTGG	1 cut(s)	301
BseX3I	CGGCCG	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	412
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	483, 567
BshTI	ACCGGT	1 cut(s)	535
BsiEI	CGRYCG	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	536, 568
BslFI	GGGAC	2 cut(s)	84, 566
BslI	CCNNNNNNNGG	2 cut(s)	493, 505
BsmFI	GGGAC	2 cut(s)	84, 566
BsnI	GGCC	2 cut(s)	483, 567
Bsp143I	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
BspACI	CCGC	2 cut(s)	455, 499
BspANI	GGCC	2 cut(s)	483, 567
BspLI	GGNNCC	1 cut(s)	582
BspMI	ACCTGC	1 cut(s)	517
BspPI	GGATC	4 cut(s)	120, 168, 327, 372
BsrFI	RCCGGY	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	535
BssECI	CCNNGG	3 cut(s)	66, 67, 458
BssMI	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
Bst2UI	CCWGG	2 cut(s)	8, 68
Bst4CI	ACNGT	3 cut(s)	109, 359, 409
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	458
BstKTI	GATC	6 cut(s)	115, 176, 322, 372, 380, 423
BstMBI	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 90
BstNI	CCWGG	2 cut(s)	8, 68
BstNSI	RCATGY	2 cut(s)	29, 45
BstSCI	CCNGG	3 cut(s)	6, 66, 567
BstV1I	GCAGC	1 cut(s)	461
BstX2I	RGATCY	3 cut(s)	112, 173, 319
BstYI	RGATCY	3 cut(s)	112, 173, 319
BstZI	CGGCCG	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	483, 567
BtgI	CCRYGG	1 cut(s)	458
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	535
Cfr13I	GGNCC	2 cut(s)	496, 580
CspAI	ACCGGT	1 cut(s)	535
CviAII	CATG	5 cut(s)	26, 42, 81, 90, 259
CviJI	RGCY	6 cut(s)	202, 236, 300, 400, 483, 567
CviKI_1	RGCY	6 cut(s)	202, 236, 300, 400, 483, 567
DpnI	GATC	6 cut(s)	114, 175, 321, 371, 379, 422
DpnII	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	565
EagI	CGGCCG	1 cut(s)	565
EclXI	CGGCCG	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	496, 580
Eco52I	CGGCCG	1 cut(s)	565
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	6, 66
FaeI	CATG	5 cut(s)	29, 45, 84, 93, 262
FaiI	YATR	6 cut(s)	27, 43, 82, 91, 260, 524
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	84, 566
FatI	CATG	5 cut(s)	25, 41, 80, 89, 258
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	3 cut(s)	219, 477, 489
GluI	GCNGC	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	483, 567
HapII	CCGG	2 cut(s)	536, 568
Hin1II	CATG	5 cut(s)	29, 45, 84, 93, 262
HincII	GTYRAC	2 cut(s)	355, 412
HindII	GTYRAC	2 cut(s)	355, 412
HinfI	GANTC	3 cut(s)	255, 394, 468
HpaII	CCGG	2 cut(s)	536, 568
HphI	GGTGA	3 cut(s)	431, 475, 525
Hpy166II	GTNNAC	4 cut(s)	23, 306, 355, 412
Hpy188I	TCNGA	6 cut(s)	117, 144, 216, 254, 386, 551
Hpy8I	GTNNAC	4 cut(s)	23, 306, 355, 412
Hpy99I	CGWCG	4 cut(s)	393, 413, 551, 566
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	3 cut(s)	109, 359, 409
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	6 cut(s)	36, 281, 340, 429, 449, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 90
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	29, 45, 84, 93, 262
Kzo9I	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
LpnPI	CCDG	8 cut(s)	20, 53, 80, 120, 314, 512, 549, 581
Lsp1109I	GCAGC	1 cut(s)	461
MaeI	CTAG	3 cut(s)	219, 477, 489
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	6 cut(s)	114, 175, 321, 371, 379, 422
MboI	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
MboII	GAAGA	2 cut(s)	257, 526
MflI	RGATCY	3 cut(s)	112, 173, 319
MluCI	AATT	5 cut(s)	48, 98, 195, 208, 288
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	187, 226, 452, 473, 487, 502, 535
MseI	TTAA	2 cut(s)	47, 162
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	2 cut(s)	536, 568
MspR9I	CCNGG	3 cut(s)	8, 68, 569
MvaI	CCWGG	2 cut(s)	8, 68
MwoI	GCNNNNNNNGC	2 cut(s)	42, 90
NciI	CCSGG	1 cut(s)	569
NdeII	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
NlaIII	CATG	5 cut(s)	29, 45, 84, 93, 262
NlaIV	GGNNCC	1 cut(s)	582
NspI	RCATGY	2 cut(s)	29, 45
OliI	CACNNNNGTG	1 cut(s)	457
PaeI	GCATGC	1 cut(s)	45
PasI	CCCWGGG	1 cut(s)	67
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	255, 468
PflFI	GACNNNGTC	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	535
PkrI	GCNGC	1 cut(s)	451
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PscI	ACATGT	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	6, 66
PspGI	CCWGG	2 cut(s)	6, 66
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	2 cut(s)	496, 580
PsuI	RGATCY	3 cut(s)	112, 173, 319
PsyI	GACNNNGTC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	47, 162
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	6 cut(s)	112, 173, 319, 369, 377, 420
Sau96I	GGNCC	2 cut(s)	496, 580
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	3 cut(s)	8, 68, 569
SetI	ASST	8 cut(s)	12, 204, 402, 444, 507, 531, 546, 564
SinI	GGWCC	2 cut(s)	496, 580
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	178, 203
SmoI	CTYRAG	2 cut(s)	178, 203
SphI	GCATGC	1 cut(s)	45
Sse9I	AATT	5 cut(s)	48, 98, 195, 208, 288
SsiI	CCGC	2 cut(s)	455, 499
SspMI	CTAG	3 cut(s)	219, 477, 489
StyD4I	CCNGG	3 cut(s)	6, 66, 567
TaaI	ACNGT	3 cut(s)	109, 359, 409
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	411, 423
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	5 cut(s)	48, 98, 195, 208, 288
TfiI	GAWTC	2 cut(s)	255, 468
Tru1I	TTAA	2 cut(s)	47, 162
Tru9I	TTAA	2 cut(s)	47, 162
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	69, 78, 247
TspGWI	ACGGA	1 cut(s)	406
Tth111I	GACNNNGTC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	496, 580
XapI	RAATTY	2 cut(s)	195, 208
XceI	RCATGY	2 cut(s)	29, 45
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	3 cut(s)	219, 477, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.