Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Reverse (-)

69720455 .. 69726611

Gene Structure 6157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG523000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGAGCTCCGTTCTCGTAAAAGGCTCTCCGGGGCCGATTCCGATGGGATTGAGCAGCGTGAGGAGGATGGGAATAGCGAGAGCAGTGGGAGCTCTGATGAGGAAATCTACTTGCCCATTTCTTTGGATTCGTCTTCGGCGTCTGATAGTGAAGGTGAAGATAACCAACAGAATGAGGAGTTGACTATTAACTTAAATGATAGACCAAAGGGCAAATTGAAGGAGCCTTTGCGAAAAAAGGGGAAGGTCGAGCAAAAGAAGAAAAGAGAACAACCAAGTTCAGAAGAGGAAGTAGTGGATTATGGCAGTTTTGATGAATTACAATTGACTCCACAAAAAGCAGTTGAAATCGACTTTCTTGGCTTGACAAGGAGAATCAAGAAAAAGAAGTCAAGATCTGGTGGGCGAAAGCCAATTCTAATGTGGAATGTCTGGGAAGAGGAGCATGATAAATGGATTGATGAGAATTTATCAGAAGATTTTGATCTCAATATTCAGAATAATGTGGTAAATGAAGTTGCTCAGACACCGTCTGATTTGATTATGCCTTTGCTGAGGTATCAGAAGGAGTGGTTGGCCTGGGCTCTGAGACAGGAAGAGTCTGAAACTAGAGGAGGAATCCTTGCAGATGAGATGGGAATGGGGAAGACTATACAAGCGATTGCACTTGTACTTGCTAAACGGGAGATCAACTGGACATTTTATGAACCAGGATCCTCTACAGGCTTGCCTCACATTAAAGGAACCCTTGTAGTTTGTCCTGTGGTTGCTGTAAGCCAGTGGGTAAGTGAGATAGAGCGCTTTACTTCAAAAGGAAGTACAAAGATCCTGGTGTATCATGGAGCCAATAGAGAGAAGAGTTCCAAACAGTTCTTGGAGTATGATTTTGTCATTACAACGTACTCCACTGTTGAAGCTGATTATAGGAAGCATGTGATGCCTCCCAAAGAAAAGTGCCCATATTGTGGGAAGTTGTTTTATGAGACAAAAATGTCTATCCACTTGAAATACTTTTGTGGGCCTAATGCTATCAGAACTGAGAAGCAGTCTAAGCAACAAAGGAAAAAGCATCTGCCATCAAAGAAGACATGTGAGCCTTCTAAAGAAAAGATCAGTGGAAGTTCGGGCACGAAGAAAGGAGCTCGCAGAAAAGGATCAAAGCTGCAGAAAGATGATGATATGGATTCAGAAGATGTTGTACGGGACATGAACAAAAAGAATTCAGTTTTGCATGCTGTGAAGTGGAACCGGATCATTTTGGATGAGGCACATTATATAAAATCTAGGCGTTGCAATACCGCAAAAGCTGTTCTTGCTTTAGAGTCTACATATAAATGGGCTCTAAGCGGCACGCCCCTTCAGAATCGTGTTGGAGAACTTTACTCATTGGTCCGCTTCTTGCAATTAGTCCCATACTCATATTACTTGTGTAAGGACTGTGACTGCAGAACTCTTGATCATAGTTCCACACCACAATGTTCGAATTGCCCTCATAGTTCTGTTAGACATTTTTGTTGGTGGAATAAAAATGTGGCCACACCAATACAATTATTTGGAAATTCATATAATGGAAAAAGAGCCATGATATTGCTAAAACACAAGATCTTAAAGAACATAGTGCTGCGACGAACTAAAAAGGGAAGGGCTGCTGACCTTGCACTTCCTCCTCGAATTGTTTCATTGAGGAAGGATACCTTGGATATCAAAGAACAAGATTACTATGAGTCATTATATACAGATAGTCAGGCATTATTTAACACATATGTTGATGCGGGAACTCTTATGAATAATTATGCTCACATCTTTGATCTTCTCACACGCTTGCGGCAGGCTGTTGATCATCCTTACCTTGTTGTGTATTCTGCAACTGCTGCTTTAAGAAATGGAATCAAGGCTAATATTGATAACACTGAGAAAGTTTGTGGCATTTGTCATGATCCAGCAGAAGATCAAGTGGTTACTGCTTGTGAACATGTCTTTTGCAAGGCATGCTTAATTGATTTTTCTGCTTCCCTGGGACAAGTTTCATGCCCTTCATGCTCAAAATTGCTTACTGTGGATCTGACTACAAGTGTGGGTGCTGGTAATCAGACTACTAAAACTACCATTAAGGGTTTTAGATCCTCAAGCATTTTGAACAGAATTCAGCTTGAGAATTTTCAGACTAGCACAAAAATAGAGGCTTTGAAAGAAGAAATCAGATTCATGGTTGAAAGAGATGGTTCTGCAAAGGGAATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATTCACTACTCCTTGCAAAAGTCGGGTGTCAACTGTGTTCAGTTGGTTGGAAGCATGACCATGTCTGCGAGGGATACTGCTATAAAGAGATTCACTGAGGATCCAGATTGCAGAATTTTCTTAATGAGCTTGAAAGCCGGAGGTGTTGCACTTAATCTTACAGTTGCATCACATGTTTTCTTGATGGACCCATGGTGGAATCCAGCCGTGGAGCGGCAAGCACAAGATAGAATCCACCGGATAGGGCAGTACAAACCGATCAGAATTGTGAGATTTGTAATTGAGAACACAATTGAGGAAAGGATTTTGAAGCTACAGGAGAAGAAGGAACTAGTGTTTGAGGGCACCATTGGTGGTTCTACAGAGGCTCTCGGGAAATTGACTGAAGCTGACTTGAAATTCTTGTTTGTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

895

Amino Acids

101.53

Weight (kDa)

8.74

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	187 - 473	4.1e-49	SNF2-related domain
zf-RING_UBOX	PF13445	641 - 678	4.1e-06	RING-type zinc-finger
zf-C3HC4	PF00097	641 - 680	7.7e-06	Zinc finger, C3HC4 type (RING finger)
Helicase_C	PF00271	725 - 839	1.2e-19	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	991
AccB1I	GGYRCC	1 cut(s)	2615
AccB7I	CCANNNNNTGG	1 cut(s)	965
AccBSI	CCGCTC	1 cut(s)	2485
AccI	GTMKAC	1 cut(s)	1325
AciI	CCGC	6 cut(s)	1299, 1347, 1393, 1772, 1825, 2485
AcoI	YGGCCR	1 cut(s)	1533
AcsI	RAATTY	7 cut(s)	466, 1219, 1558, 2142, 2155, 2385, 2669
AcuI	CTGAAG	2 cut(s)	1343, 2676
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	5 cut(s)	672, 820, 902, 1200, 2522
AfeI	AGCGCT	1 cut(s)	800
AfiI	CCNNNNNNNGG	2 cut(s)	965, 2484
AflIII	ACRYGT	3 cut(s)	1088, 1972, 2443
AhlI	ACTAGT	1 cut(s)	2602
AjnI	CCWGG	4 cut(s)	578, 709, 828, 2013
AjuI	GAANNNNNNNTTGG	4 cut(s)	557, 589, 1679, 1711
Alw21I	GWGCWC	3 cut(s)	9, 95, 1144
Alw26I	GTCTC	2 cut(s)	583, 977
Ama87I	CYCGRG	1 cut(s)	2642
Aor51HI	AGCGCT	1 cut(s)	800
AoxI	GGCC	4 cut(s)	33, 576, 1019, 1533
ApeKI	GCWGC	5 cut(s)	55, 1162, 1621, 1646, 1871
ApoI	RAATTY	7 cut(s)	466, 1219, 1558, 2142, 2155, 2385, 2669
Asp700I	GAANNNNTTC	1 cut(s)	1675
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	4 cut(s)	33, 1019, 1390, 2458
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	167, 2674
AsuII	TTCGAA	1 cut(s)	1481
AvaI	CYCGRG	1 cut(s)	2642
AvaII	GGWCC	2 cut(s)	1390, 2458
BaeGI	GKGCMC	3 cut(s)	959, 1130, 2618
BalI	TGGCCA	1 cut(s)	1535
BamHI	GGATCC	2 cut(s)	713, 2371
BanI	GGYRCC	1 cut(s)	2615
BanII	GRGCYC	5 cut(s)	9, 95, 586, 1144, 1342
BarI	GAAGNNNNNNTAC	2 cut(s)	1182, 1214
BbsI	GAAGAC	3 cut(s)	126, 653, 1091
Bbv12I	GWGCWC	3 cut(s)	9, 95, 1144
BbvCI	CCTCAGC	1 cut(s)	554
BbvI	GCAGC	5 cut(s)	67, 1149, 1608, 1633, 1858
BccI	CCATC	6 cut(s)	38, 62, 628, 1084, 2213, 2449
BceAI	ACGGC	1 cut(s)	2462
BciT130I	CCWGG	4 cut(s)	580, 711, 830, 2015
BciVI	GTATCC	2 cut(s)	1684, 2338
BclI	TGATCA	2 cut(s)	1456, 1837
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	583, 977
BcuI	ACTAGT	1 cut(s)	2602
BfaI	CTAG	4 cut(s)	609, 1284, 2166, 2603
BfmI	CTRYAG	5 cut(s)	720, 1163, 1444, 2585, 2631
BfoI	RGCGCY	1 cut(s)	802
BfuI	GTATCC	2 cut(s)	1684, 2338
BglII	AGATCT	2 cut(s)	395, 1602
BisI	GCNGC	8 cut(s)	56, 1163, 1348, 1622, 1647, 1826, 1872, 2486
BlsI	GCNGC	8 cut(s)	57, 1164, 1349, 1623, 1648, 1827, 1873, 2487
Bme1390I	CCNGG	5 cut(s)	31, 580, 711, 830, 2015
Bme18I	GGWCC	2 cut(s)	1390, 2458
BmeT110I	CYCGRG	1 cut(s)	2642
BmgT120I	GGNCC	4 cut(s)	33, 1019, 1390, 2458
BmiI	GGNNCC	9 cut(s)	34, 225, 715, 745, 844, 1247, 2373, 2460, 2617
BmrFI	CCNGG	5 cut(s)	31, 580, 711, 830, 2015
BmsI	GCATC	4 cut(s)	927, 1078, 1759, 2447
BpiI	GAAGAC	3 cut(s)	126, 653, 1091
Bpu10I	CCTNAGC	1 cut(s)	554
Bpu14I	TTCGAA	1 cut(s)	1481
BpuEI	CTTGAG	2 cut(s)	2110, 2171
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	7 cut(s)	30, 579, 1695, 2013, 2014, 2462, 2478
BsaWI	WCCGGW	2 cut(s)	1248, 2508
Bsc4I	CCNNNNNNNGG	2 cut(s)	965, 2484
Bse1I	ACTGG	3 cut(s)	698, 778, 2248
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	4 cut(s)	580, 711, 830, 2015
BseDI	CCNNGG	7 cut(s)	30, 579, 1695, 2013, 2014, 2462, 2478
BseGI	GGATG	3 cut(s)	73, 1267, 1840
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	965, 2484
BseMII	CTCAG	6 cut(s)	536, 545, 578, 1029, 1902, 2358
BseNI	ACTGG	3 cut(s)	698, 778, 2248
BseRI	GAGGAG	5 cut(s)	77, 191, 455, 627, 1656
BseSI	GKGCMC	3 cut(s)	959, 1130, 2618
BseXI	GCAGC	5 cut(s)	67, 1149, 1608, 1633, 1858
BshFI	GGCC	4 cut(s)	35, 578, 1021, 1535
BshNI	GGYRCC	1 cut(s)	2615
BsiHKAI	GWGCWC	3 cut(s)	9, 95, 1144
BsiHKCI	CYCGRG	1 cut(s)	2642
BsiSI	CCGG	4 cut(s)	30, 1249, 2409, 2509
BslFI	GGGAC	3 cut(s)	1217, 1394, 2031
BslI	CCNNNNNNNGG	2 cut(s)	965, 2484
BsmAI	GTCTC	2 cut(s)	583, 977
BsmFI	GGGAC	3 cut(s)	1217, 1394, 2031
BsnI	GGCC	4 cut(s)	35, 578, 1021, 1535
BsoBI	CYCGRG	1 cut(s)	2642
Bsp119I	TTCGAA	1 cut(s)	1481
Bsp1286I	GDGCHC	8 cut(s)	9, 95, 586, 959, 1130, 1144, 1342, 2618
Bsp19I	CCATGG	1 cut(s)	2462
BspACI	CCGC	6 cut(s)	1299, 1347, 1393, 1772, 1825, 2485
BspANI	GGCC	4 cut(s)	35, 578, 1021, 1535
BspCNI	CTCAG	6 cut(s)	535, 546, 579, 1030, 1903, 2359
BspHI	TCATGA	1 cut(s)	1933
BspLI	GGNNCC	9 cut(s)	34, 225, 715, 745, 844, 1247, 2373, 2460, 2617
BspMAI	CTGCAG	2 cut(s)	1167, 1448
BspT104I	TTCGAA	1 cut(s)	1481
BspT107I	GGYRCC	1 cut(s)	2615
BsrBI	CCGCTC	1 cut(s)	2485
BsrI	ACTGG	3 cut(s)	698, 778, 2248
BssECI	CCNNGG	7 cut(s)	30, 579, 1695, 2013, 2014, 2462, 2478
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	1695, 2462
Bst2UI	CCWGG	4 cut(s)	580, 711, 830, 2015
Bst4CI	ACNGT	7 cut(s)	531, 870, 910, 1439, 2056, 2306, 2434
Bst6I	CTCTTC	4 cut(s)	279, 432, 591, 851
BstACI	GRCGYC	1 cut(s)	140
BstAPI	GCANNNNNTGC	3 cut(s)	937, 1871, 1989
BstBI	TTCGAA	1 cut(s)	1481
BstC8I	GCNNGC	8 cut(s)	728, 1144, 1233, 1352, 1823, 1830, 1990, 2490
BstDEI	CTNAG	8 cut(s)	522, 554, 587, 1038, 1050, 1343, 1911, 2367
BstDSI	CCRYGG	2 cut(s)	2462, 2478
BstF5I	GGATG	3 cut(s)	73, 1267, 1840
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstMAI	GTCTC	2 cut(s)	583, 977
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 937, 1051, 1313, 1655, 1871, 1989, 2037
BstNI	CCWGG	4 cut(s)	580, 711, 830, 2015
BstNSI	RCATGY	6 cut(s)	935, 1092, 1235, 1976, 1992, 2447
BstSCI	CCNGG	5 cut(s)	29, 578, 709, 828, 2013
BstSFI	CTRYAG	5 cut(s)	720, 1163, 1444, 2585, 2631
BstSLI	GKGCMC	3 cut(s)	959, 1130, 2618
BstV1I	GCAGC	5 cut(s)	67, 1149, 1608, 1633, 1858
BstV2I	GAAGAC	3 cut(s)	126, 653, 1091
BstX2I	RGATCY	8 cut(s)	395, 713, 825, 1602, 2059, 2120, 2266, 2371
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	8 cut(s)	395, 713, 825, 1602, 2059, 2120, 2266, 2371
BsuI	GTATCC	2 cut(s)	1684, 2338
BsuRI	GGCC	4 cut(s)	35, 578, 1021, 1535
BtgI	CCRYGG	2 cut(s)	2462, 2478
BtsCI	GGATG	3 cut(s)	73, 1267, 1840
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	6 cut(s)	91, 785, 906, 1120, 1908, 2364
Cac8I	GCNNGC	8 cut(s)	728, 1144, 1233, 1352, 1823, 1830, 1990, 2490
CciI	TCATGA	1 cut(s)	1933
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	4 cut(s)	33, 1019, 1390, 2458
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	5 cut(s)	671, 819, 901, 1199, 2521
CviQI	GTAC	5 cut(s)	671, 819, 901, 1199, 2521
DdeI	CTNAG	8 cut(s)	522, 554, 587, 1038, 1050, 1343, 1911, 2367
DrdI	GACNNNNNNGTC	1 cut(s)	991
DseDI	GACNNNNNNGTC	1 cut(s)	991
EaeI	YGGCCR	1 cut(s)	1533
Eam1104I	CTCTTC	4 cut(s)	279, 432, 591, 851
EarI	CTCTTC	4 cut(s)	279, 432, 591, 851
Ecl136II	GAGCTC	3 cut(s)	7, 93, 1142
Eco130I	CCWWGG	2 cut(s)	1695, 2462
Eco24I	GRGCYC	5 cut(s)	9, 95, 586, 1144, 1342
Eco32I	GATATC	1 cut(s)	1702
Eco47I	GGWCC	2 cut(s)	1390, 2458
Eco47III	AGCGCT	1 cut(s)	800
Eco53kI	GAGCTC	3 cut(s)	7, 93, 1142
Eco57I	CTGAAG	2 cut(s)	1343, 2676
Eco88I	CYCGRG	1 cut(s)	2642
EcoICRI	GAGCTC	3 cut(s)	7, 93, 1142
EcoRI	GAATTC	2 cut(s)	1219, 2142
EcoRII	CCWGG	4 cut(s)	578, 709, 828, 2013
EcoRV	GATATC	1 cut(s)	1702
EcoT14I	CCWWGG	2 cut(s)	1695, 2462
EcoT38I	GRGCYC	5 cut(s)	9, 95, 586, 1144, 1342
ErhI	CCWWGG	2 cut(s)	1695, 2462
FalI	AAGNNNNNCTT	8 cut(s)	732, 764, 1296, 1328, 1679, 1711, 1976, 2008
FaqI	GGGAC	3 cut(s)	1217, 1394, 2031
FauI	CCCGC	1 cut(s)	1765
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	2 cut(s)	1456, 1837
FblI	GTMKAC	1 cut(s)	1325
Fnu4HI	GCNGC	8 cut(s)	56, 1163, 1348, 1622, 1647, 1826, 1872, 2486
FokI	GGATG	3 cut(s)	80, 1274, 1827
FriOI	GRGCYC	5 cut(s)	9, 95, 586, 1144, 1342
Fsp4HI	GCNGC	8 cut(s)	56, 1163, 1348, 1622, 1647, 1826, 1872, 2486
FspBI	CTAG	4 cut(s)	609, 1284, 2166, 2603
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	8 cut(s)	56, 1163, 1348, 1622, 1647, 1826, 1872, 2486
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	4 cut(s)	35, 578, 1021, 1535
HapII	CCGG	4 cut(s)	30, 1249, 2409, 2509
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	801
Hin1I	GRCGYC	1 cut(s)	140
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	2 cut(s)	183, 2302
HindII	GTYRAC	2 cut(s)	183, 2302
HpaII	CCGG	4 cut(s)	30, 1249, 2409, 2509
HphI	GGTGA	2 cut(s)	167, 2674
Hpy166II	GTNNAC	5 cut(s)	183, 1326, 1970, 2253, 2302
Hpy188III	TCNNGA	7 cut(s)	379, 393, 1454, 1934, 2375, 2452, 2644
Hpy8I	GTNNAC	5 cut(s)	183, 1326, 1970, 2253, 2302
Hpy99I	CGWCG	1 cut(s)	1629
HpyCH4III	ACNGT	7 cut(s)	531, 870, 910, 1439, 2056, 2306, 2434
HpyCH4IV	ACGT	1 cut(s)	899
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 937, 1051, 1313, 1655, 1871, 1989, 2037
HpyF3I	CTNAG	8 cut(s)	522, 554, 587, 1038, 1050, 1343, 1911, 2367
HpySE526I	ACGT	1 cut(s)	899
Hsp92I	GRCGYC	1 cut(s)	140
HspAI	GCGC	1 cut(s)	799
Ksp22I	TGATCA	2 cut(s)	1456, 1837
LmnI	GCTCC	8 cut(s)	4, 12, 90, 223, 442, 842, 1139, 2482
Lsp1109I	GCAGC	5 cut(s)	67, 1149, 1608, 1633, 1858
LweI	GCATC	4 cut(s)	927, 1078, 1759, 2447
MaeI	CTAG	4 cut(s)	609, 1284, 2166, 2603
MaeII	ACGT	1 cut(s)	899
MaeIII	GTNAC	3 cut(s)	1439, 1957, 2680
MbiI	CCGCTC	1 cut(s)	2485
MfeI	CAATTG	2 cut(s)	323, 2562
MflI	RGATCY	8 cut(s)	395, 713, 825, 1602, 2059, 2120, 2266, 2371
MhlI	GDGCHC	8 cut(s)	9, 95, 586, 959, 1130, 1144, 1342, 2618
MlsI	TGGCCA	1 cut(s)	1535
MluNI	TGGCCA	1 cut(s)	1535
MlyI	GAGTC	4 cut(s)	322, 608, 1331, 1733
MmeI	TCCRAC	2 cut(s)	1351, 2299
Mox20I	TGGCCA	1 cut(s)	1535
MroXI	GAANNNNTTC	1 cut(s)	1675
MscI	TGGCCA	1 cut(s)	1535
MslI	CAYNNNNRTG	3 cut(s)	1333, 1474, 2330
Msp20I	TGGCCA	1 cut(s)	1535
MspI	CCGG	4 cut(s)	30, 1249, 2409, 2509
MspR9I	CCNGG	5 cut(s)	31, 580, 711, 830, 2015
MunI	CAATTG	2 cut(s)	323, 2562
MvaI	CCWGG	4 cut(s)	580, 711, 830, 2015
MwoI	GCNNNNNNNGC	8 cut(s)	90, 937, 1051, 1313, 1655, 1871, 1989, 2037
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	2462
NdeI	CATATG	1 cut(s)	1762
NlaIV	GGNNCC	9 cut(s)	34, 225, 715, 745, 844, 1247, 2373, 2460, 2617
NmuCI	GTSAC	2 cut(s)	1439, 2680
NspI	RCATGY	6 cut(s)	935, 1092, 1235, 1976, 1992, 2447
NspV	TTCGAA	1 cut(s)	1481
PaeI	GCATGC	2 cut(s)	1235, 1992
PagI	TCATGA	1 cut(s)	1933
PasI	CCCWGGG	1 cut(s)	2014
PciI	ACATGT	3 cut(s)	1088, 1972, 2443
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	1675
PflFI	GACNNNGTC	2 cut(s)	529, 2332
PflMI	CCANNNNNTGG	1 cut(s)	965
PkrI	GCNGC	8 cut(s)	57, 1164, 1349, 1623, 1648, 1827, 1873, 2487
PleI	GAGTC	4 cut(s)	322, 607, 1330, 1732
PpsI	GAGTC	4 cut(s)	322, 607, 1330, 1732
PscI	ACATGT	3 cut(s)	1088, 1972, 2443
Psp124BI	GAGCTC	3 cut(s)	9, 95, 1144
Psp6I	CCWGG	4 cut(s)	578, 709, 828, 2013
PspGI	CCWGG	4 cut(s)	578, 709, 828, 2013
PspN4I	GGNNCC	9 cut(s)	34, 225, 715, 745, 844, 1247, 2373, 2460, 2617
PspPI	GGNCC	4 cut(s)	33, 1019, 1390, 2458
PstI	CTGCAG	2 cut(s)	1167, 1448
PsuI	RGATCY	8 cut(s)	395, 713, 825, 1602, 2059, 2120, 2266, 2371
PsyI	GACNNNGTC	2 cut(s)	529, 2332
RsaI	GTAC	5 cut(s)	672, 820, 902, 1200, 2522
RsaNI	GTAC	5 cut(s)	671, 819, 901, 1199, 2521
RseI	CAYNNNNRTG	3 cut(s)	1333, 1474, 2330
SacI	GAGCTC	3 cut(s)	9, 95, 1144
SatI	GCNGC	8 cut(s)	56, 1163, 1348, 1622, 1647, 1826, 1872, 2486
Sau96I	GGNCC	4 cut(s)	33, 1019, 1390, 2458
SchI	GAGTC	4 cut(s)	322, 608, 1331, 1733
ScrFI	CCNGG	5 cut(s)	31, 580, 711, 830, 2015
SduI	GDGCHC	8 cut(s)	9, 95, 586, 959, 1130, 1144, 1342, 2618
SfaNI	GCATC	4 cut(s)	927, 1078, 1759, 2447
SfcI	CTRYAG	5 cut(s)	720, 1163, 1444, 2585, 2631
SfuI	TTCGAA	1 cut(s)	1481
SinI	GGWCC	2 cut(s)	1390, 2458
SmiMI	CAYNNNNRTG	3 cut(s)	1333, 1474, 2330
SmlI	CTYRAG	2 cut(s)	2125, 2150
SmoI	CTYRAG	2 cut(s)	2125, 2150
SpeI	ACTAGT	1 cut(s)	2602
SphI	GCATGC	2 cut(s)	1235, 1992
SsiI	CCGC	6 cut(s)	1299, 1347, 1393, 1772, 1825, 2485
SspI	AATATT	2 cut(s)	493, 1900
SspMI	CTAG	4 cut(s)	609, 1284, 2166, 2603
SstI	GAGCTC	3 cut(s)	9, 95, 1144
StyD4I	CCNGG	5 cut(s)	29, 578, 709, 828, 2013
StyI	CCWWGG	2 cut(s)	1695, 2462
TaaI	ACNGT	7 cut(s)	531, 870, 910, 1439, 2056, 2306, 2434
TaiI	ACGT	1 cut(s)	902
TaqI	TCGA	4 cut(s)	249, 351, 1481, 1669
TatI	WGTACW	3 cut(s)	670, 818, 2520
TauI	GCSGC	3 cut(s)	1350, 1828, 2488
TscAI	CASTG	6 cut(s)	91, 785, 913, 1120, 1915, 2371
TseFI	GTSAC	2 cut(s)	1439, 2680
TseI	GCWGC	5 cut(s)	55, 1162, 1621, 1646, 1871
Tsp45I	GTSAC	2 cut(s)	1439, 2680
TspRI	CASTG	6 cut(s)	91, 785, 913, 1120, 1915, 2371
Tth111I	GACNNNGTC	2 cut(s)	529, 2332
Van91I	CCANNNNNTGG	1 cut(s)	965
VpaK11BI	GGWCC	2 cut(s)	1390, 2458
XapI	RAATTY	7 cut(s)	466, 1219, 1558, 2142, 2155, 2385, 2669
XceI	RCATGY	6 cut(s)	935, 1092, 1235, 1976, 1992, 2447
XcmI	CCANNNNNNNNNTGG	2 cut(s)	420, 871
XmiI	GTMKAC	1 cut(s)	1325
XmnI	GAANNNNTTC	1 cut(s)	1675
XspI	CTAG	4 cut(s)	609, 1284, 2166, 2603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.