Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007967.1

Orthogroup ID

OG0004692

Physical Location & Seq

Genomic Coordinates Forward (+)

15082 .. 20633

Gene Structure 5552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007967.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2862 bp

atggaagttaattccaaggaaccaagttccaaagagtcgcgtccctccgataccccttacgtgtcgcaattccaccccccttcccaccacctgatgcaatcccgaccctctactcagctccagctcccacaaaccaaccgtctagatctctctactccctaccgcagccgcaccaaatcccagcccctccagttggcgacgtgtattaaaaccctcttttttttctttcccggtgatcggcaaaaccctaattccctaatggagctccgttctcgtaaaaggctctccggcgccgattccgatgggattgagcagcgtgaggaggatgggaatagcgagagcagtgggagctctgatgaggaaatctacttgcccatttctttggattcgtcttcggcgtctgatagtgaaggtgaagatagccaacagaatgaggaggtgactattaacttaaatgatagaccaaagggcaaattgaagcagcctctgcgaaaaaaggggaaggtcgagcaaaagaagaaaagagaacaaccaagttcggaagaggaagtagtggattatggcagttttgatgaattacaattgactccacaaaaagcagttgaaatcgactttcttggcttgacaaggagaatcaagaaaaagaagtcaagatctggtgggcgaaagccaattctaatgtggaatgtctgggaagaggagcatgataaatggattgatgagaattcatcagaagattttgatctcaatattcagaataatgtggtaaatgaagttgctgagacaccgtctgatttgattatgcctttgctgaggtatcagaaggagtggttggcctgggctctgagacaggaagagtctgaaactaaaggaggaatccttgcagatgagatgggaatggggaagactatacaagcgattgcacttgtacttgctaaacgggagatcaactggacattttatgaaccaggatcctctacaggcttgcctcacattaaaggaacccttgtagtttgtcctgtggttgctgtaagccagtgggtaagtgagatagagcgctttacttcaaaaggaagtacaaagatcctggtgtatcatggagccaatagagagaagagttccaaacagttcttggagtatgattttgtcattacaacgtactccactgttgaagctgattataggaagcatgtgatgcctcccaaagaaaagtgcccacattgtgggaagttgttttatgagacaaaaatgtctatccacttgaaatacttttgtgggcctaatgctatcagaactgagaagcagtctaagcaacaaaggaaaaagcatctgccatcaaagaagacatgtgagccttctaaagaaaagatcagtggaagttcgggcacgaagaaaggagctcgcagaaaaggatcaaagctgcagaaagatgatgatatggattcagaagatgctgtacgggacatgaacaaaaagaattcagttttgcatgctgtgaagtggaaccggatcattttggatgaggcacattatataaaatctaggcgttgcaatactgcaaaagctgttcttgctttagagtctacatataaatgggctctaagcggcacgcccctgcagaatcgtgttggagaactttactcattggtccgcttcttgcaattagtcccatactcatattacttgtgtaaggactgtgactgcagaactcttgatcatagttccacaccacaatgttcgaattgccctcatagttctgttagacatttttgttggtggaataaaaatgtggccacaccaatacaattatttggaaattcatataatggaaaaagagccatgatattgctaaaacacaagatcttaaagaacatagtgctgcgacgaactaaaaagggaagggctgctgaccttgcacttcctcctcgaattgtttcattgaggaaggataccttggatatcaaagaacaagattactatgagtcattatatacagatagtcaggcattatttaacacatatgttgatgcgggaactcttatgaataattatgctcacatctttgatcttctcacacgcttgcggcaggctgttgatcatccttaccttgttgtgtattctgcaactgctgctttaagaaatggaaacaaggctaatattgataacactgagaaagtttgtggcatttgtcatgatccagcagaagatcaagtggttactgcttgtgaacatgtcttttgcaaggcatgcttaattgatttttctgcttccctgggacaagtttcatgcccttcatgctcaaaattgcttactgtggatctgactacaagtgtgggtgctggtaatcagactactaaaactaccattaagggttttagatcctcaagcattttgaacagaattcaccttgagaattttcagactagcacaaaaatagaggctttgaaagaagaaatcagattcatggttgaaagagatggttctgcaaagggaattgtttttagccagttcacatcattcttggatctcattcactactccttgcaaaagtcgggtgtcaactgtgttcagttggttggaagcatgaccatgtctacgagggatactgctataaagagattcactgaggatccagactgcagaattttcttaatgagcttgaaagctggaggtgttgctcttaatcttacagtcgcatcacatgttttcttgatggacccatggtggaatccagctgtggagcggcaagcacaagatagaatccaccggatagggcagtacaaaccgatcagaattgtgagatttgtaattgagaacacaattgaggaaaggattttgaagctacagagaagaaggaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000166 GO:0000720 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0004842 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006290 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016462 GO:0016567 GO:0016740 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0019787 GO:0030554 GO:0032392 GO:0032446 GO:0032508 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033554 GO:0034641 GO:0035639 GO:0036094 GO:0036211 GO:0042623 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051276 GO:0051716 GO:0061630 GO:0061659 GO:0070035 GO:0070647 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097367 GO:0140096 GO:0140097 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1990391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_2 zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

953

Amino Acids

108.42

Weight (kDa)

9.04

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G02670 AT1G05120 AT1G05120
fragaria_vesca	FvH4_6g42970 FvH4_6g42970
malus_domestica	MD17G1098500.v1.1
prunus_persica	Prupe.3G215900_v2.0.a1 Prupe.3G215900_v2.0.a1
pyrus_communis	pycom09g03310 pycom17g09390
rosa_chinensis	RchiOBHm_Chr2g0158951
rosa_laevigata	RLG00000021126
rosa_multiflora	Rmu_sc0002845.1_g000016 Rmu_sc0007967.1_g000006 Rmu_sc0013139.1_g000001 Rmu_sc0030100.1_g000001
rosa_roxburghii	Rroxscaffold_1G00030500 Rroxscaffold_2G00090850
rosa_rugosa	Rorug02G0473200
rosa_samantha	Rh2AG539700 Rh2BG552600 Rh2CG523000 Rh2DG562300
rosa_wichuraiana	Rw2G044670 Rw7G039330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1249
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	1223
AccBSI	CCGCTC	1 cut(s)	2743
AccI	GTMKAC	2 cut(s)	1583, 2594
AccII	CGCG	1 cut(s)	40
AciI	CCGC	7 cut(s)	163, 169, 1605, 1651, 2030, 2083, 2743
AcoI	YGGCCR	1 cut(s)	1791
AcsI	RAATTY	6 cut(s)	724, 1477, 1816, 2400, 2413, 2643
AcyI	GRCGYC	2 cut(s)	291, 398
AdeI	CACNNNGTG	1 cut(s)	1223
AfaI	GTAC	5 cut(s)	930, 1078, 1160, 1458, 2780
AfeI	AGCGCT	1 cut(s)	1058
AfiI	CCNNNNNNNGG	3 cut(s)	193, 237, 1223
AflIII	ACRYGT	5 cut(s)	60, 200, 1346, 2230, 2701
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	4 cut(s)	836, 967, 1086, 2271
AjuI	GAANNNNNNNTTGG	4 cut(s)	815, 847, 1937, 1969
Alw21I	GWGCWC	3 cut(s)	267, 353, 1402
Alw26I	GTCTC	3 cut(s)	776, 841, 1235
AlwNI	CAGNNNCTG	1 cut(s)	487
Aor51HI	AGCGCT	1 cut(s)	1058
AoxI	GGCC	3 cut(s)	834, 1277, 1791
ApeKI	GCWGC	7 cut(s)	165, 313, 481, 1420, 1879, 1904, 2129
ApoI	RAATTY	6 cut(s)	724, 1477, 1816, 2400, 2413, 2643
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
Asp700I	GAANNNNTTC	1 cut(s)	1933
AspLEI	GCGC	2 cut(s)	293, 1059
AspS9I	GGNCC	3 cut(s)	1277, 1648, 2716
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	4 cut(s)	245, 425, 451, 2396
AsuII	TTCGAA	1 cut(s)	1739
AvaII	GGWCC	2 cut(s)	1648, 2716
BaeGI	GKGCMC	2 cut(s)	1217, 1388
BalI	TGGCCA	1 cut(s)	1793
BamHI	GGATCC	2 cut(s)	971, 2629
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	5 cut(s)	267, 353, 844, 1402, 1600
BarI	GAAGNNNNNNTAC	2 cut(s)	1440, 1472
BbsI	GAAGAC	3 cut(s)	384, 911, 1349
Bbv12I	GWGCWC	3 cut(s)	267, 353, 1402
BbvCI	CCTCAGC	1 cut(s)	812
BbvI	GCAGC	7 cut(s)	177, 325, 493, 1407, 1866, 1891, 2116
BccI	CCATC	6 cut(s)	296, 320, 886, 1342, 2471, 2707
BciT130I	CCWGG	4 cut(s)	838, 969, 1088, 2273
BciVI	GTATCC	2 cut(s)	1942, 2596
BclI	TGATCA	2 cut(s)	1714, 2095
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	3 cut(s)	776, 841, 1235
BfaI	CTAG	4 cut(s)	143, 1542, 2424, 2860
BfmI	CTRYAG	6 cut(s)	978, 1421, 1616, 1702, 2638, 2843
BfoI	RGCGCY	2 cut(s)	294, 1060
BfuI	GTATCC	2 cut(s)	1942, 2596
BglII	AGATCT	3 cut(s)	145, 653, 1860
Bme1390I	CCNGG	5 cut(s)	231, 838, 969, 1088, 2273
Bme18I	GGWCC	2 cut(s)	1648, 2716
BmgBI	CACGTC	1 cut(s)	201
BmgT120I	GGNCC	3 cut(s)	1277, 1648, 2716
BmiI	GGNNCC	8 cut(s)	21, 292, 973, 1003, 1102, 1505, 2631, 2718
BmrFI	CCNGG	5 cut(s)	231, 838, 969, 1088, 2273
BmsI	GCATC	6 cut(s)	84, 1185, 1336, 1441, 2017, 2705
BpiI	GAAGAC	3 cut(s)	384, 911, 1349
BpmI	CTGGAG	3 cut(s)	104, 173, 2688
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu14I	TTCGAA	1 cut(s)	1739
BpuEI	CTTGAG	2 cut(s)	2368, 2429
BpuMI	CCSGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	2 cut(s)	291, 398
BsaJI	CCNNGG	6 cut(s)	15, 837, 1953, 2271, 2272, 2720
BsaWI	WCCGGW	2 cut(s)	1506, 2766
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 237, 1223
Bse1I	ACTGG	4 cut(s)	190, 956, 1036, 2506
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	4 cut(s)	838, 969, 1088, 2273
BseDI	CCNNGG	6 cut(s)	15, 837, 1953, 2271, 2272, 2720
BseGI	GGATG	3 cut(s)	331, 1525, 2098
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	193, 237, 1223
BseMII	CTCAG	7 cut(s)	128, 771, 803, 836, 1287, 2160, 2616
BseNI	ACTGG	4 cut(s)	190, 956, 1036, 2506
BseRI	GAGGAG	4 cut(s)	335, 449, 713, 1914
BseSI	GKGCMC	2 cut(s)	1217, 1388
BseXI	GCAGC	7 cut(s)	177, 325, 493, 1407, 1866, 1891, 2116
BseYI	CCCAGC	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	3 cut(s)	836, 1279, 1793
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	3 cut(s)	267, 353, 1402
BsiSI	CCGG	4 cut(s)	231, 288, 1507, 2767
BslFI	GGGAC	4 cut(s)	27, 1475, 1652, 2289
BslI	CCNNNNNNNGG	3 cut(s)	193, 237, 1223
BsmAI	GTCTC	3 cut(s)	776, 841, 1235
BsmFI	GGGAC	4 cut(s)	27, 1475, 1652, 2289
BsnI	GGCC	3 cut(s)	836, 1279, 1793
Bsp119I	TTCGAA	1 cut(s)	1739
Bsp1286I	GDGCHC	7 cut(s)	267, 353, 844, 1217, 1388, 1402, 1600
Bsp19I	CCATGG	1 cut(s)	2720
BspACI	CCGC	7 cut(s)	163, 169, 1605, 1651, 2030, 2083, 2743
BspANI	GGCC	3 cut(s)	836, 1279, 1793
BspCNI	CTCAG	7 cut(s)	127, 772, 804, 837, 1288, 2161, 2617
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	2191
BspLI	GGNNCC	8 cut(s)	21, 292, 973, 1003, 1102, 1505, 2631, 2718
BspMAI	CTGCAG	4 cut(s)	1425, 1620, 1706, 2642
BspT104I	TTCGAA	1 cut(s)	1739
BspT107I	GGYRCC	1 cut(s)	290
BsrBI	CCGCTC	1 cut(s)	2743
BsrI	ACTGG	4 cut(s)	190, 956, 1036, 2506
BssECI	CCNNGG	6 cut(s)	15, 837, 1953, 2271, 2272, 2720
BssNI	GRCGYC	2 cut(s)	291, 398
BssT1I	CCWWGG	3 cut(s)	15, 1953, 2720
Bst2UI	CCWGG	4 cut(s)	838, 969, 1088, 2273
Bst4CI	ACNGT	8 cut(s)	140, 789, 1128, 1168, 1697, 2314, 2564, 2692
Bst6I	CTCTTC	4 cut(s)	537, 690, 849, 1109
BstACI	GRCGYC	2 cut(s)	291, 398
BstAPI	GCANNNNNTGC	4 cut(s)	487, 1195, 2129, 2247
BstBAI	YACGTR	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	1739
BstC8I	GCNNGC	8 cut(s)	986, 1402, 1491, 1610, 2081, 2088, 2248, 2748
BstDEI	CTNAG	9 cut(s)	114, 780, 812, 845, 1296, 1308, 1601, 2169, 2625
BstDSI	CCRYGG	1 cut(s)	2720
BstF5I	GGATG	3 cut(s)	331, 1525, 2098
BstFNI	CGCG	1 cut(s)	40
BstH2I	RGCGCY	2 cut(s)	294, 1060
BstHHI	GCGC	2 cut(s)	293, 1059
BstMAI	GTCTC	3 cut(s)	776, 841, 1235
BstMWI	GCNNNNNNNGC	9 cut(s)	348, 487, 1195, 1309, 1571, 1913, 2129, 2247, 2295
BstNI	CCWGG	4 cut(s)	838, 969, 1088, 2273
BstNSI	RCATGY	6 cut(s)	1193, 1350, 1493, 2234, 2250, 2705
BstSCI	CCNGG	5 cut(s)	229, 836, 967, 1086, 2271
BstSFI	CTRYAG	6 cut(s)	978, 1421, 1616, 1702, 2638, 2843
BstSLI	GKGCMC	2 cut(s)	1217, 1388
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	7 cut(s)	177, 325, 493, 1407, 1866, 1891, 2116
BstV2I	GAAGAC	3 cut(s)	384, 911, 1349
BstX2I	RGATCY	9 cut(s)	145, 653, 971, 1083, 1860, 2317, 2378, 2524, 2629
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	9 cut(s)	145, 653, 971, 1083, 1860, 2317, 2378, 2524, 2629
BsuI	GTATCC	2 cut(s)	1942, 2596
BsuRI	GGCC	3 cut(s)	836, 1279, 1793
BtgI	CCRYGG	1 cut(s)	2720
BtrI	CACGTC	1 cut(s)	201
BtsCI	GGATG	3 cut(s)	331, 1525, 2098
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	6 cut(s)	349, 1043, 1164, 1378, 2166, 2622
Cac8I	GCNNGC	8 cut(s)	986, 1402, 1491, 1610, 2081, 2088, 2248, 2748
CaiI	CAGNNNCTG	1 cut(s)	487
CciI	TCATGA	1 cut(s)	2191
CfoI	GCGC	2 cut(s)	293, 1059
Cfr13I	GGNCC	3 cut(s)	1277, 1648, 2716
CseI	GACGC	2 cut(s)	29, 387
Csp6I	GTAC	5 cut(s)	929, 1077, 1159, 1457, 2779
CviQI	GTAC	5 cut(s)	929, 1077, 1159, 1457, 2779
DdeI	CTNAG	9 cut(s)	114, 780, 812, 845, 1296, 1308, 1601, 2169, 2625
DinI	GGCGCC	1 cut(s)	292
DraIII	CACNNNGTG	1 cut(s)	1223
DrdI	GACNNNNNNGTC	1 cut(s)	1249
DseDI	GACNNNNNNGTC	1 cut(s)	1249
EaeI	YGGCCR	1 cut(s)	1791
Eam1104I	CTCTTC	4 cut(s)	537, 690, 849, 1109
EarI	CTCTTC	4 cut(s)	537, 690, 849, 1109
Ecl136II	GAGCTC	3 cut(s)	265, 351, 1400
Eco130I	CCWWGG	3 cut(s)	15, 1953, 2720
Eco24I	GRGCYC	5 cut(s)	267, 353, 844, 1402, 1600
Eco32I	GATATC	1 cut(s)	1960
Eco47I	GGWCC	2 cut(s)	1648, 2716
Eco47III	AGCGCT	1 cut(s)	1058
Eco53kI	GAGCTC	3 cut(s)	265, 351, 1400
EcoICRI	GAGCTC	3 cut(s)	265, 351, 1400
EcoRI	GAATTC	3 cut(s)	724, 1477, 2400
EcoRII	CCWGG	4 cut(s)	836, 967, 1086, 2271
EcoRV	GATATC	1 cut(s)	1960
EcoT14I	CCWWGG	3 cut(s)	15, 1953, 2720
EcoT38I	GRGCYC	5 cut(s)	267, 353, 844, 1402, 1600
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	3 cut(s)	15, 1953, 2720
FalI	AAGNNNNNCTT	8 cut(s)	990, 1022, 1554, 1586, 1937, 1969, 2234, 2266
FaqI	GGGAC	4 cut(s)	27, 1475, 1652, 2289
FauI	CCCGC	1 cut(s)	2023
FauNDI	CATATG	1 cut(s)	2020
FbaI	TGATCA	2 cut(s)	1714, 2095
FblI	GTMKAC	2 cut(s)	1583, 2594
FokI	GGATG	3 cut(s)	338, 1532, 2085
FriOI	GRGCYC	5 cut(s)	267, 353, 844, 1402, 1600
FspBI	CTAG	4 cut(s)	143, 1542, 2424, 2860
GlaI	GCGC	2 cut(s)	292, 1058
GsaI	CCCAGC	1 cut(s)	184
GsuI	CTGGAG	3 cut(s)	104, 173, 2688
HaeII	RGCGCY	2 cut(s)	294, 1060
HaeIII	GGCC	3 cut(s)	836, 1279, 1793
HapII	CCGG	4 cut(s)	231, 288, 1507, 2767
HgaI	GACGC	2 cut(s)	29, 387
HhaI	GCGC	2 cut(s)	293, 1059
Hin1I	GRCGYC	2 cut(s)	291, 398
Hin6I	GCGC	2 cut(s)	291, 1057
HinP1I	GCGC	2 cut(s)	291, 1057
HincII	GTYRAC	1 cut(s)	2560
HindII	GTYRAC	1 cut(s)	2560
HpaII	CCGG	4 cut(s)	231, 288, 1507, 2767
HphI	GGTGA	4 cut(s)	245, 425, 451, 2396
Hpy166II	GTNNAC	5 cut(s)	1584, 2228, 2511, 2560, 2595
Hpy188III	TCNNGA	8 cut(s)	102, 143, 637, 651, 1712, 2192, 2633, 2710
Hpy8I	GTNNAC	5 cut(s)	1584, 2228, 2511, 2560, 2595
Hpy99I	CGWCG	2 cut(s)	202, 1887
HpyAV	CCTTC	9 cut(s)	90, 404, 496, 817, 1365, 1893, 1939, 2301, 2847
HpyCH4III	ACNGT	8 cut(s)	140, 789, 1128, 1168, 1697, 2314, 2564, 2692
HpyCH4IV	ACGT	3 cut(s)	60, 200, 1157
HpyF10VI	GCNNNNNNNGC	9 cut(s)	348, 487, 1195, 1309, 1571, 1913, 2129, 2247, 2295
HpyF3I	CTNAG	9 cut(s)	114, 780, 812, 845, 1296, 1308, 1601, 2169, 2625
HpySE526I	ACGT	3 cut(s)	60, 200, 1157
Hsp92I	GRCGYC	2 cut(s)	291, 398
HspAI	GCGC	2 cut(s)	291, 1057
KasI	GGCGCC	1 cut(s)	290
Ksp22I	TGATCA	2 cut(s)	1714, 2095
LmnI	GCTCC	9 cut(s)	123, 129, 262, 270, 348, 700, 1100, 1397, 2740
Lsp1109I	GCAGC	7 cut(s)	177, 325, 493, 1407, 1866, 1891, 2116
LweI	GCATC	6 cut(s)	84, 1185, 1336, 1441, 2017, 2705
MaeI	CTAG	4 cut(s)	143, 1542, 2424, 2860
MaeII	ACGT	3 cut(s)	60, 200, 1157
MaeIII	GTNAC	3 cut(s)	439, 1697, 2215
MbiI	CCGCTC	1 cut(s)	2743
MfeI	CAATTG	2 cut(s)	581, 2820
MflI	RGATCY	9 cut(s)	145, 653, 971, 1083, 1860, 2317, 2378, 2524, 2629
MhlI	GDGCHC	7 cut(s)	267, 353, 844, 1217, 1388, 1402, 1600
MlsI	TGGCCA	1 cut(s)	1793
MluNI	TGGCCA	1 cut(s)	1793
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	5 cut(s)	44, 580, 866, 1589, 1991
MmeI	TCCRAC	2 cut(s)	1609, 2557
Mox20I	TGGCCA	1 cut(s)	1793
MroXI	GAANNNNTTC	1 cut(s)	1933
MscI	TGGCCA	1 cut(s)	1793
MslI	CAYNNNNRTG	3 cut(s)	1591, 1732, 2588
Msp20I	TGGCCA	1 cut(s)	1793
MspA1I	CMGCKG	1 cut(s)	2735
MspI	CCGG	4 cut(s)	231, 288, 1507, 2767
MspR9I	CCNGG	5 cut(s)	231, 838, 969, 1088, 2273
MunI	CAATTG	2 cut(s)	581, 2820
MvaI	CCWGG	4 cut(s)	838, 969, 1088, 2273
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	9 cut(s)	348, 487, 1195, 1309, 1571, 1913, 2129, 2247, 2295
NarI	GGCGCC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	2720
NdeI	CATATG	1 cut(s)	2020
NlaIV	GGNNCC	8 cut(s)	21, 292, 973, 1003, 1102, 1505, 2631, 2718
NmuCI	GTSAC	2 cut(s)	439, 1697
NspI	RCATGY	6 cut(s)	1193, 1350, 1493, 2234, 2250, 2705
NspV	TTCGAA	1 cut(s)	1739
PaeI	GCATGC	2 cut(s)	1493, 2250
PagI	TCATGA	1 cut(s)	2191
PasI	CCCWGGG	1 cut(s)	2272
PciI	ACATGT	3 cut(s)	1346, 2230, 2701
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	1933
PflFI	GACNNNGTC	2 cut(s)	787, 2590
PflMI	CCANNNNNTGG	1 cut(s)	1223
PleI	GAGTC	5 cut(s)	43, 580, 865, 1588, 1990
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	5 cut(s)	43, 580, 865, 1588, 1990
Ppu21I	YACGTR	1 cut(s)	61
PscI	ACATGT	3 cut(s)	1346, 2230, 2701
Psp124BI	GAGCTC	3 cut(s)	267, 353, 1402
Psp6I	CCWGG	4 cut(s)	836, 967, 1086, 2271
PspFI	CCCAGC	1 cut(s)	180
PspGI	CCWGG	4 cut(s)	836, 967, 1086, 2271
PspN4I	GGNNCC	8 cut(s)	21, 292, 973, 1003, 1102, 1505, 2631, 2718
PspPI	GGNCC	3 cut(s)	1277, 1648, 2716
PstI	CTGCAG	4 cut(s)	1425, 1620, 1706, 2642
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	9 cut(s)	145, 653, 971, 1083, 1860, 2317, 2378, 2524, 2629
PsyI	GACNNNGTC	2 cut(s)	787, 2590
PvuII	CAGCTG	1 cut(s)	2735
RsaI	GTAC	5 cut(s)	930, 1078, 1160, 1458, 2780
RsaNI	GTAC	5 cut(s)	929, 1077, 1159, 1457, 2779
RseI	CAYNNNNRTG	3 cut(s)	1591, 1732, 2588
SacI	GAGCTC	3 cut(s)	267, 353, 1402
Sau96I	GGNCC	3 cut(s)	1277, 1648, 2716
SchI	GAGTC	5 cut(s)	44, 580, 866, 1589, 1991
ScrFI	CCNGG	5 cut(s)	231, 838, 969, 1088, 2273
SduI	GDGCHC	7 cut(s)	267, 353, 844, 1217, 1388, 1402, 1600
SfaNI	GCATC	6 cut(s)	84, 1185, 1336, 1441, 2017, 2705
SfcI	CTRYAG	6 cut(s)	978, 1421, 1616, 1702, 2638, 2843
SfoI	GGCGCC	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	1739
SinI	GGWCC	2 cut(s)	1648, 2716
SmiMI	CAYNNNNRTG	3 cut(s)	1591, 1732, 2588
SmlI	CTYRAG	2 cut(s)	2383, 2408
SmoI	CTYRAG	2 cut(s)	2383, 2408
SphI	GCATGC	2 cut(s)	1493, 2250
SsiI	CCGC	7 cut(s)	163, 169, 1605, 1651, 2030, 2083, 2743
SspDI	GGCGCC	1 cut(s)	290
SspI	AATATT	2 cut(s)	751, 2158
SspMI	CTAG	4 cut(s)	143, 1542, 2424, 2860
SstI	GAGCTC	3 cut(s)	267, 353, 1402
StyD4I	CCNGG	5 cut(s)	229, 836, 967, 1086, 2271
StyI	CCWWGG	3 cut(s)	15, 1953, 2720
TaaI	ACNGT	8 cut(s)	140, 789, 1128, 1168, 1697, 2314, 2564, 2692
TaiI	ACGT	3 cut(s)	63, 203, 1160
TaqI	TCGA	4 cut(s)	507, 609, 1739, 1927
TatI	WGTACW	3 cut(s)	928, 1076, 2778
TauI	GCSGC	4 cut(s)	171, 1608, 2086, 2746
TscAI	CASTG	6 cut(s)	349, 1043, 1171, 1378, 2173, 2629
TseFI	GTSAC	2 cut(s)	439, 1697
TseI	GCWGC	7 cut(s)	165, 313, 481, 1420, 1879, 1904, 2129
Tsp45I	GTSAC	2 cut(s)	439, 1697
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	6 cut(s)	349, 1043, 1171, 1378, 2173, 2629
Tth111I	GACNNNGTC	2 cut(s)	787, 2590
Van91I	CCANNNNNTGG	1 cut(s)	1223
VpaK11BI	GGWCC	2 cut(s)	1648, 2716
XapI	RAATTY	6 cut(s)	724, 1477, 1816, 2400, 2413, 2643
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	6 cut(s)	1193, 1350, 1493, 2234, 2250, 2705
XcmI	CCANNNNNNNNNTGG	2 cut(s)	678, 1129
XmiI	GTMKAC	2 cut(s)	1583, 2594
XmnI	GAANNNNTTC	1 cut(s)	1933
XspI	CTAG	4 cut(s)	143, 1542, 2424, 2860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.