pycom09g11930

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010805
Physical Location & Seq
Reverse (-)
10162568 .. 10164828
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 975 bp
ATGGCCACTGAGATGGAGGGGTGTACAAGGAAGGAGAAGGAGGCATGTCCACAACTGTTAGATTTGATTCCAAGAGAGAGAGACTGGCTTGTGAGCAGAGATATTGCGAGAAGCAGCAGCCGTGGAAGCTCCTCCTCAGAGGAGAAGAAGCTTGAGCTCAGGCTTGGCCCTCCAGGTCAAGACTGGTCAATGAAAAGAGAGAGAGATGAGAAGTCTCAGTCCCTTCTCTCTATTGGATACTATTCTTCCCCCATGTCCTCCAACCAAACCCAGAAATTTATTTCTTACCAGCAGCAAGCAAAAGTTGCATCTTTTCTTCACCTGCCTGTCACCCCCAACAAAGCGTCACAGCCCTGGTGCACTAAAGCACTAGACTTGCAGAATGCAGAAAATAAAGGGTTTTCACCAGCCCCTGCAAATACAGCTGTGCTCCCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTTGTGGGTTGGCCTCCAATTCGATCATTTAGGAAGAATCTTGCAAGCAACAAAAGCTCATCAAAATCAGCAGTCGAATCCGAAAATGTTGTCCAAATCAAAGATCCTAATGGTAAACCAGTTGAAACCAGCGGAAAGGGTCTGTTTGTGAAAATTAACATGGATGGAGTCCCCATTGGAAGAAAAGTGGACCTCAGTGCTTATGACAGCTACCAAAAGCTCTCGTCCGCTGTCGATGAACTCTTCCGTGGCCTTCTCGCCGCTCAAAGAGAATCCTGTAATGGTGGAACCAAGAACAAGCAAGAGGAAGAGAAAGAAATCACAGGCTTATTGGATGGAAGTGGAGAATACACCCTTGTTTATGAAGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGGTGCGTGTGCTGAAGAGCTCTGAACTTTCTGCACTTCATCTTCGTAGCAGCAAAGATAAGATGCCACTTTGA

Protein Analysis

325

Amino Acids

35.9

Weight (kDa)

9.08

Isoelectric Point (pI)

59.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 51 - 313 4.1e-67 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51950 AT3G16500 AT3G16500
fragaria_vesca FvH4_6g32450 FvH4_6g32450
malus_domestica MD09G1202300.v1.1 MD17G1183500.v1.1
prunus_persica Prupe.3G058600_v2.0.a1
pyrus_communis pycom09g11930 pycom17g19260
rosa_chinensis RchiOBHm_Chr2g0140681
rosa_laevigata RLG00000019891
rosa_multiflora Rmu_sc0003342.1_g000011
rosa_roxburghii Rroxscaffold_2G00104590
rosa_rugosa Rorug02G0364000
rosa_samantha Rh2AG415700 Rh2BG425200 Rh2CG401700 Rh2DG435200
rosa_wichuraiana Rw2G034010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 731
AccI GTMKAC 1 cut(s) 890
AciI CCGC 3 cut(s) 600, 696, 729
AclWI GGATC 1 cut(s) 566
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 935
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 879
AgsI TTSAA 1 cut(s) 593
AjnI CCWGG 2 cut(s) 172, 353
AluBI AGCT 8 cut(s) 129, 151, 157, 425, 525, 678, 688, 921
AluI AGCT 8 cut(s) 129, 151, 157, 425, 525, 678, 688, 921
Alw21I GWGCWC 4 cut(s) 159, 362, 432, 923
Alw26I GTCTC 3 cut(s) 75, 219, 840
Alw44I GTGCAC 1 cut(s) 358
AlwI GGATC 1 cut(s) 566
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 4 cut(s) 3, 166, 479, 718
ApaLI GTGCAC 1 cut(s) 358
ApeKI GCWGC 4 cut(s) 114, 117, 292, 951
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 543, 575
AspS9I GGNCC 2 cut(s) 167, 658
AsuHPI GGTGA 3 cut(s) 311, 322, 396
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 159, 923
Bbv12I GWGCWC 4 cut(s) 159, 362, 432, 923
BbvI GCAGC 4 cut(s) 126, 129, 304, 963
BccI CCATC 3 cut(s) 7, 626, 797
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 174, 355
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 75, 219, 840
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 330
BfuI GTATCC 1 cut(s) 230
BisI GCNGC 5 cut(s) 115, 118, 293, 729, 952
BlsI GCNGC 5 cut(s) 116, 119, 294, 730, 953
Bme1390I CCNGG 2 cut(s) 174, 355
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 167, 658
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 2 cut(s) 174, 355
BmsI GCATC 3 cut(s) 317, 843, 954
BpmI CTGGAG 2 cut(s) 156, 450
Bpu10I CCTNAGC 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 121, 353, 715, 872
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 4 cut(s) 89, 188, 467, 587
BseBI CCWGG 2 cut(s) 174, 355
BseDI CCNNGG 4 cut(s) 121, 353, 715, 872
BseGI GGATG 4 cut(s) 637, 808, 858, 871
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMII CTCAG 5 cut(s) 150, 172, 230, 458, 676
BseNI ACTGG 4 cut(s) 89, 188, 467, 587
BseRI GAGGAG 3 cut(s) 121, 124, 155
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 4 cut(s) 126, 129, 304, 963
BsgI GTGCAG 1 cut(s) 918
BshFI GGCC 4 cut(s) 5, 168, 481, 720
BsiHKAI GWGCWC 4 cut(s) 159, 362, 432, 923
BslFI GGGAC 3 cut(s) 205, 623, 854
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 3 cut(s) 75, 219, 840
BsmFI GGGAC 3 cut(s) 205, 623, 854
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 4 cut(s) 5, 168, 481, 720
Bsp1286I GDGCHC 4 cut(s) 159, 362, 432, 923
Bsp1407I TGTACA 1 cut(s) 23
Bsp143I GATC 2 cut(s) 491, 571
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 3 cut(s) 600, 696, 729
BspANI GGCC 4 cut(s) 5, 168, 481, 720
BspCNI CTCAG 5 cut(s) 149, 171, 229, 457, 675
BspLI GGNNCC 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 566
BspQI GCTCTTC 1 cut(s) 911
BsrBI CCGCTC 1 cut(s) 731
BsrGI TGTACA 1 cut(s) 23
BsrI ACTGG 4 cut(s) 89, 188, 467, 587
BssECI CCNNGG 4 cut(s) 121, 353, 715, 872
BssMI GATC 2 cut(s) 491, 571
BssT1I CCWWGG 1 cut(s) 872
Bst2UI CCWGG 2 cut(s) 174, 355
Bst4CI ACNGT 2 cut(s) 57, 895
Bst6I CTCTTC 4 cut(s) 716, 771, 893, 911
BstAPI GCANNNNNTGC 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 297, 514
BstDEI CTNAG 6 cut(s) 9, 136, 158, 216, 444, 662
BstDSI CCRYGG 3 cut(s) 121, 715, 872
BstF5I GGATG 4 cut(s) 637, 808, 858, 871
BstKTI GATC 2 cut(s) 494, 574
BstMAI GTCTC 3 cut(s) 75, 219, 840
BstMBI GATC 2 cut(s) 491, 571
BstMWI GCNNNNNNNGC 4 cut(s) 126, 305, 422, 522
BstNI CCWGG 2 cut(s) 174, 355
BstNSI RCATGY 2 cut(s) 48, 883
BstSCI CCNGG 2 cut(s) 172, 353
BstSLI GKGCMC 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 126, 129, 304, 963
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 571
BsuI GTATCC 1 cut(s) 230
BsuRI GGCC 4 cut(s) 5, 168, 481, 720
BtgI CCRYGG 3 cut(s) 121, 715, 872
BtsCI GGATG 4 cut(s) 637, 808, 858, 871
BtsIMutI CAGTG 2 cut(s) 6, 670
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 297, 514
CaiI CAGNNNCTG 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 167, 658
CseI GACGC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 24
CviAII CATG 5 cut(s) 45, 253, 628, 873, 880
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 6 cut(s) 9, 136, 158, 216, 444, 662
DpnI GATC 2 cut(s) 493, 573
DpnII GATC 2 cut(s) 491, 571
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 716, 771, 893, 911
EarI CTCTTC 4 cut(s) 716, 771, 893, 911
Ecl136II GAGCTC 2 cut(s) 157, 921
Eco130I CCWWGG 1 cut(s) 872
Eco24I GRGCYC 2 cut(s) 159, 923
Eco47I GGWCC 1 cut(s) 658
Eco53kI GAGCTC 2 cut(s) 157, 921
Eco57I CTGAAG 1 cut(s) 935
EcoICRI GAGCTC 2 cut(s) 157, 921
EcoRII CCWGG 2 cut(s) 172, 353
EcoT14I CCWWGG 1 cut(s) 872
EcoT38I GRGCYC 2 cut(s) 159, 923
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 5 cut(s) 48, 256, 631, 876, 883
FaiI YATR 7 cut(s) 46, 254, 629, 672, 831, 874, 881
FaqI GGGAC 3 cut(s) 205, 623, 854
FatI CATG 5 cut(s) 44, 252, 627, 872, 879
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 5 cut(s) 115, 118, 293, 729, 952
FokI GGATG 4 cut(s) 644, 815, 865, 878
FriOI GRGCYC 2 cut(s) 159, 923
Fsp4HI GCNGC 5 cut(s) 115, 118, 293, 729, 952
FspBI CTAG 1 cut(s) 371
GluI GCNGC 5 cut(s) 115, 118, 293, 729, 952
GsuI CTGGAG 2 cut(s) 156, 450
HaeIII GGCC 4 cut(s) 5, 168, 481, 720
HgaI GACGC 1 cut(s) 333
Hin1II CATG 5 cut(s) 48, 256, 631, 876, 883
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 5 cut(s) 67, 505, 545, 636, 740
HphI GGTGA 3 cut(s) 311, 322, 396
Hpy166II GTNNAC 6 cut(s) 24, 50, 360, 584, 658, 891
Hpy188I TCNGA 4 cut(s) 139, 447, 550, 925
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 6 cut(s) 24, 50, 360, 584, 658, 891
HpyAV CCTTC 5 cut(s) 25, 31, 233, 731, 836
HpyCH4III ACNGT 2 cut(s) 57, 895
HpyCH4V TGCA 7 cut(s) 308, 360, 379, 386, 416, 512, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 305, 422, 522
HpyF3I CTNAG 6 cut(s) 9, 136, 158, 216, 444, 662
Hsp92II CATG 5 cut(s) 48, 256, 631, 876, 883
Kzo9I GATC 2 cut(s) 491, 571
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 4 cut(s) 134, 435, 463, 469
Lsp1109I GCAGC 4 cut(s) 126, 129, 304, 963
LweI GCATC 3 cut(s) 317, 843, 954
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 2 cut(s) 328, 345
MalI GATC 2 cut(s) 493, 573
MbiI CCGCTC 1 cut(s) 731
MboI GATC 2 cut(s) 491, 571
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 4 cut(s) 159, 362, 432, 923
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 275, 486, 621
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 645
MmeI TCCRAC 1 cut(s) 285
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 2 cut(s) 11, 884
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 3 cut(s) 425, 600, 698
MspR9I CCNGG 2 cut(s) 174, 355
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 2 cut(s) 174, 355
MwoI GCNNNNNNNGC 4 cut(s) 126, 305, 422, 522
NcoI CCATGG 1 cut(s) 872
NdeII GATC 2 cut(s) 491, 571
NlaIII CATG 5 cut(s) 48, 256, 631, 876, 883
NlaIV GGNNCC 1 cut(s) 757
NmuCI GTSAC 2 cut(s) 328, 345
NspI RCATGY 2 cut(s) 48, 883
PaqCI CACCTGC 1 cut(s) 330
PciI ACATGT 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 911
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 4 cut(s) 67, 505, 545, 740
PkrI GCNGC 5 cut(s) 116, 119, 294, 730, 953
PleI GAGTC 1 cut(s) 644
PpsI GAGTC 1 cut(s) 644
PscI ACATGT 1 cut(s) 879
Psp124BI GAGCTC 2 cut(s) 159, 923
Psp6I CCWGG 2 cut(s) 172, 353
PspGI CCWGG 2 cut(s) 172, 353
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 2 cut(s) 167, 658
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 1 cut(s) 571
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 11, 884
SacI GAGCTC 2 cut(s) 159, 923
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 5 cut(s) 115, 118, 293, 729, 952
Sau3AI GATC 2 cut(s) 491, 571
Sau96I GGNCC 2 cut(s) 167, 658
SchI GAGTC 1 cut(s) 645
ScrFI CCNGG 2 cut(s) 174, 355
SduI GDGCHC 4 cut(s) 159, 362, 432, 923
SfaNI GCATC 3 cut(s) 317, 843, 954
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 2 cut(s) 11, 884
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 275, 486, 621
SsiI CCGC 3 cut(s) 600, 696, 729
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 2 cut(s) 159, 923
StyD4I CCNGG 2 cut(s) 172, 353
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 2 cut(s) 57, 895
TaqI TCGA 3 cut(s) 490, 543, 702
TasI AATT 3 cut(s) 275, 486, 621
TatI WGTACW 1 cut(s) 23
TauI GCSGC 1 cut(s) 731
TfiI GAWTC 4 cut(s) 67, 505, 545, 740
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 2 cut(s) 13, 670
TseFI GTSAC 2 cut(s) 328, 345
TseI GCWGC 4 cut(s) 114, 117, 292, 951
Tsp45I GTSAC 2 cut(s) 328, 345
TspDTI ATGAA 5 cut(s) 206, 720, 846, 855, 929
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 2 cut(s) 13, 670
VneI GTGCAC 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 1 cut(s) 275
XceI RCATGY 2 cut(s) 48, 883
XcmI CCANNNNNNNNNTGG 2 cut(s) 180, 474
XmiI GTMKAC 1 cut(s) 890
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.